Wall clock time and date at job start Tue Mar 31 2020 18:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86803 * 119.99911 * 2 1 4 4 H 1.48503 * 109.47104 * 270.00253 * 3 2 1 5 5 H 1.48497 * 109.47163 * 30.00467 * 3 2 1 6 6 H 1.48504 * 109.46750 * 150.00337 * 3 2 1 7 7 C 1.38955 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99561 * 179.97438 * 7 2 1 9 9 N 1.37094 * 119.99993 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99794 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99554 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99570 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46686 * 180.02562 * 12 10 9 14 14 C 1.46901 * 111.00151 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.46970 * 324.99934 * 14 13 12 16 16 C 1.53002 * 109.47186 * 84.99645 * 14 13 12 17 17 C 1.52997 * 109.47143 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.47131 * 299.99831 * 17 16 14 19 19 C 1.53002 * 109.46969 * 60.00062 * 18 17 16 20 20 H 1.09004 * 109.46930 * 59.99996 * 19 18 17 21 21 N 1.46506 * 109.47035 * 179.97438 * 19 18 17 22 22 C 1.34767 * 120.00003 * 274.99925 * 21 19 18 23 23 O 1.21699 * 120.00271 * 0.02562 * 22 21 19 24 24 C 1.46666 * 119.99962 * 180.02562 * 22 21 19 25 25 C 1.36543 * 125.98869 * 179.71864 * 24 22 21 26 26 C 1.40360 * 106.70642 * 179.90951 * 25 24 22 27 27 C 1.35129 * 107.11583 * 0.35289 * 26 25 24 28 28 O 1.33926 * 108.76637 * 359.78109 * 27 26 25 29 29 C 1.52996 * 109.47379 * 204.99654 * 14 13 12 30 30 H 0.97001 * 120.00039 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99684 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.47641 * 60.00264 * 12 10 9 33 33 H 1.08994 * 109.47364 * 299.99527 * 12 10 9 34 34 H 1.00903 * 110.99991 * 303.95209 * 13 12 10 35 35 H 1.09004 * 109.46930 * 60.00265 * 16 14 13 36 36 H 1.09002 * 109.47067 * 300.00348 * 16 14 13 37 37 H 1.09001 * 109.46832 * 180.02562 * 17 16 14 38 38 H 1.08992 * 109.47303 * 60.00452 * 17 16 14 39 39 H 1.09004 * 109.47298 * 300.00283 * 18 17 16 40 40 H 1.09004 * 109.47552 * 180.02562 * 18 17 16 41 41 H 0.96996 * 119.99678 * 95.00711 * 21 19 18 42 42 H 1.07999 * 126.64628 * 0.03599 * 25 24 22 43 43 H 1.08005 * 126.44181 * 180.11238 * 26 25 24 44 44 H 1.07997 * 125.61668 * 179.78544 * 27 26 25 45 45 H 1.09001 * 109.46997 * 60.00222 * 29 14 13 46 46 H 1.08996 * 109.47452 * 299.99795 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2101 -3.5578 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 7 2.1983 -5.9795 -0.0004 14 6 1.4980 -7.2708 -0.0003 15 1 0.5846 -7.1888 0.5887 16 6 1.1450 -7.6596 -1.4374 17 6 0.4151 -9.0043 -1.4372 18 6 1.3205 -10.0759 -0.8268 19 6 1.6736 -9.6871 0.6102 20 1 0.7600 -9.6047 1.1992 21 7 2.5400 -10.7136 1.1950 22 6 1.9983 -11.8098 1.7617 23 8 0.7894 -11.9473 1.7873 24 6 2.8658 -12.8372 2.3476 25 6 2.4501 -13.9875 2.9545 26 6 3.6072 -14.6697 3.3617 27 6 4.6648 -13.9117 2.9972 28 8 4.2140 -12.8083 2.3864 29 6 2.4039 -8.3422 0.6099 30 1 -0.4850 0.8401 0.0004 31 1 0.3534 -2.3906 -0.0005 32 1 0.6174 -4.9205 -0.8913 33 1 0.6168 -4.9209 0.8886 34 1 2.8338 -5.9124 -0.7813 35 1 2.0584 -7.7417 -2.0264 36 1 0.4996 -6.8963 -1.8721 37 1 0.1640 -9.2814 -2.4611 38 1 -0.4984 -8.9218 -0.8484 39 1 2.2340 -10.1584 -1.4158 40 1 0.8007 -11.0341 -0.8271 41 1 3.5036 -10.6042 1.1743 42 1 1.4289 -14.3108 3.0925 43 1 3.6450 -15.6198 3.8739 44 1 5.7026 -14.1555 3.1698 45 1 2.6554 -8.0653 1.6337 46 1 3.3173 -8.4243 0.0209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266043326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:48 Heat of formation + Delta-G solvation = -68.719006 kcal Electronic energy + Delta-G solvation = -27825.110761 eV Core-core repulsion = 23715.677147 eV Total energy + Delta-G solvation = -4109.433614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.07416 -40.22477 -38.78982 -37.92482 -35.36982 -34.03720 -33.59189 -33.31552 -31.22693 -30.85833 -29.94058 -28.87394 -26.11892 -24.29052 -23.86591 -22.42566 -22.15529 -21.55234 -20.64537 -20.25831 -19.27126 -18.73518 -17.86485 -16.77826 -16.71275 -16.68212 -15.83446 -15.33858 -15.12730 -14.96672 -14.73418 -14.47604 -14.24464 -14.03306 -13.78467 -13.66229 -13.41520 -13.34605 -13.12000 -13.02267 -12.83442 -12.46165 -12.05689 -11.68373 -11.51585 -11.49470 -11.24331 -11.05299 -10.98527 -10.75648 -10.63933 -10.48897 -10.40593 -10.38523 -10.20807 -9.50418 -9.45889 -9.06782 -8.45741 -8.02679 -7.94745 -6.41088 -3.81884 0.67194 1.94202 2.27342 2.84814 2.85321 3.18197 3.26842 3.32890 3.91668 4.06142 4.25505 4.27066 4.47892 4.54371 4.57933 4.75285 4.85180 4.95507 5.02463 5.17468 5.20492 5.24593 5.25874 5.31120 5.34698 5.38295 5.46967 5.50099 5.68761 5.77263 5.83436 5.86134 5.88854 5.92534 5.99464 6.05825 6.10916 6.19963 6.24765 6.30437 6.41690 7.14009 7.23959 7.55755 7.67568 7.75544 8.07036 8.62013 9.18545 9.55167 10.06621 10.76621 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023819 B = 0.001772 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.262710 B =15798.481040 C =16429.384876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.051 3.949 13 N -0.663 5.663 14 C 0.093 3.907 15 H 0.080 0.920 16 C -0.154 4.154 17 C -0.111 4.111 18 C -0.129 4.129 19 C 0.145 3.855 20 H 0.092 0.908 21 N -0.713 5.713 22 C 0.603 3.397 23 O -0.520 6.520 24 C -0.079 4.079 25 C -0.121 4.121 26 C -0.226 4.226 27 C -0.006 4.006 28 O -0.164 6.164 29 C -0.113 4.113 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.350 0.650 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.406 0.594 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.211 0.789 45 H 0.079 0.921 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.573 -28.306 1.983 28.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.294 5.294 14 C -0.018 4.018 15 H 0.098 0.902 16 C -0.193 4.193 17 C -0.150 4.150 18 C -0.167 4.167 19 C 0.041 3.959 20 H 0.110 0.890 21 N -0.362 5.362 22 C 0.389 3.611 23 O -0.398 6.398 24 C -0.131 4.131 25 C -0.142 4.142 26 C -0.245 4.245 27 C -0.076 4.076 28 O -0.059 6.059 29 C -0.152 4.152 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.170 0.830 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.241 0.759 42 H 0.178 0.822 43 H 0.175 0.825 44 H 0.227 0.773 45 H 0.097 0.903 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.647 -27.914 2.562 28.268 hybrid contribution -0.089 0.605 -0.798 1.006 sum 3.558 -27.309 1.764 27.596 Atomic orbital electron populations 1.69612 1.05930 1.28143 1.50606 1.25264 0.95637 0.99718 0.97342 0.85855 0.79249 0.80818 0.78349 1.20442 1.20926 1.19419 1.19704 0.93372 0.82257 1.47588 0.87932 1.41867 1.09205 1.04614 1.64371 1.19828 0.88387 0.84744 0.84435 1.90519 1.13782 1.87092 1.55428 1.21699 0.94405 0.90886 1.01191 1.60121 1.18482 0.99535 1.51288 1.21474 0.96453 0.89215 0.94657 0.90211 1.22376 1.01072 0.97487 0.98388 1.21405 0.98452 0.94177 1.00938 1.21934 1.00261 0.99245 0.95277 1.21107 0.94209 0.86410 0.94156 0.88968 1.45995 1.11060 1.20603 1.58561 1.16550 0.86391 0.80406 0.77726 1.90895 1.12692 1.77322 1.58849 1.22151 0.80643 1.00269 1.10072 1.22004 1.00882 0.93156 0.98131 1.21889 0.91802 1.03175 1.07656 1.24446 1.00410 0.85270 0.97482 1.84070 1.21032 1.39671 1.61122 1.21753 0.98792 0.91779 1.02842 0.91883 0.77458 0.93786 0.89619 0.83020 0.91528 0.91546 0.91649 0.91546 0.91661 0.91497 0.75937 0.82206 0.82547 0.77270 0.90252 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.58 13.05 55.50 0.72 -23.85 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -14.32 5.29 -10.96 -0.06 -14.37 16 10 C 0.44 10.37 7.82 -10.99 -0.09 10.29 16 11 O -0.58 -15.83 15.78 5.55 0.09 -15.74 16 12 C 0.05 0.88 5.97 -4.98 -0.03 0.85 16 13 N -0.66 -10.31 5.87 -107.99 -0.63 -10.94 16 14 C 0.09 1.09 2.47 -67.71 -0.17 0.92 16 15 H 0.08 0.94 7.80 -51.93 -0.40 0.53 16 16 C -0.15 -1.58 5.17 -26.73 -0.14 -1.71 16 17 C -0.11 -1.00 5.92 -26.73 -0.16 -1.16 16 18 C -0.13 -1.18 5.49 -26.73 -0.15 -1.33 16 19 C 0.15 1.42 2.45 -67.90 -0.17 1.25 16 20 H 0.09 1.03 7.57 -51.93 -0.39 0.64 16 21 N -0.71 -6.61 5.07 -55.09 -0.28 -6.89 16 22 C 0.60 6.72 7.75 -12.86 -0.10 6.62 16 23 O -0.52 -7.30 16.53 5.19 0.09 -7.21 16 24 C -0.08 -0.77 7.13 -36.79 -0.26 -1.03 16 25 C -0.12 -1.04 10.62 -39.40 -0.42 -1.46 16 26 C -0.23 -1.41 10.87 -39.89 -0.43 -1.84 16 27 C -0.01 -0.03 12.08 29.63 0.36 0.32 16 28 O -0.16 -1.34 10.40 5.02 0.05 -1.29 16 29 C -0.11 -1.16 5.00 -26.71 -0.13 -1.30 16 30 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.39 9.52 7.90 -40.82 -0.32 9.19 16 32 H 0.04 0.69 7.44 -51.93 -0.39 0.30 16 33 H 0.09 1.39 8.05 -51.93 -0.42 0.98 16 34 H 0.35 5.63 8.17 -39.29 -0.32 5.31 16 35 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 36 H 0.07 0.72 7.45 -51.93 -0.39 0.33 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.41 3.07 8.36 -40.82 -0.34 2.73 16 42 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.16 0.59 8.06 -52.48 -0.42 0.16 16 44 H 0.21 0.31 8.06 -52.49 -0.42 -0.11 16 45 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 386.16 15.07 5.82 5.82 Total: -1.00 -33.49 386.16 -8.06 -41.55 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -6.71 Total: 14.48 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -2.12 Total: 2.38 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -0.25 Total: -56.06 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: 0.23 Total: -24.24 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.49 -8.06 -41.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266043326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.170 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds