Wall clock time and date at job start Tue Mar 31 2020 18:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86803 * 119.99911 * 2 1 4 4 H 1.48503 * 109.47104 * 270.00253 * 3 2 1 5 5 H 1.48497 * 109.47163 * 30.00467 * 3 2 1 6 6 H 1.48504 * 109.46750 * 150.00337 * 3 2 1 7 7 C 1.38955 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99561 * 179.97438 * 7 2 1 9 9 N 1.37094 * 119.99993 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99794 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99554 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99570 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46686 * 180.02562 * 12 10 9 14 14 C 1.46901 * 111.00151 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.46970 * 324.99934 * 14 13 12 16 16 C 1.53002 * 109.47186 * 84.99645 * 14 13 12 17 17 C 1.52997 * 109.47143 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.47131 * 299.99831 * 17 16 14 19 19 C 1.53002 * 109.46969 * 60.00062 * 18 17 16 20 20 H 1.09004 * 109.46930 * 59.99996 * 19 18 17 21 21 N 1.46506 * 109.47035 * 179.97438 * 19 18 17 22 22 C 1.34767 * 120.00003 * 274.99925 * 21 19 18 23 23 O 1.21699 * 120.00271 * 0.02562 * 22 21 19 24 24 C 1.46666 * 119.99962 * 180.02562 * 22 21 19 25 25 C 1.36543 * 125.98869 * 179.71864 * 24 22 21 26 26 C 1.40360 * 106.70642 * 179.90951 * 25 24 22 27 27 C 1.35129 * 107.11583 * 0.35289 * 26 25 24 28 28 O 1.33926 * 108.76637 * 359.78109 * 27 26 25 29 29 C 1.52996 * 109.47379 * 204.99654 * 14 13 12 30 30 H 0.97001 * 120.00039 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99684 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.47641 * 60.00264 * 12 10 9 33 33 H 1.08994 * 109.47364 * 299.99527 * 12 10 9 34 34 H 1.00903 * 110.99991 * 303.95209 * 13 12 10 35 35 H 1.09004 * 109.46930 * 60.00265 * 16 14 13 36 36 H 1.09002 * 109.47067 * 300.00348 * 16 14 13 37 37 H 1.09001 * 109.46832 * 180.02562 * 17 16 14 38 38 H 1.08992 * 109.47303 * 60.00452 * 17 16 14 39 39 H 1.09004 * 109.47298 * 300.00283 * 18 17 16 40 40 H 1.09004 * 109.47552 * 180.02562 * 18 17 16 41 41 H 0.96996 * 119.99678 * 95.00711 * 21 19 18 42 42 H 1.07999 * 126.64628 * 0.03599 * 25 24 22 43 43 H 1.08005 * 126.44181 * 180.11238 * 26 25 24 44 44 H 1.07997 * 125.61668 * 179.78544 * 27 26 25 45 45 H 1.09001 * 109.46997 * 60.00222 * 29 14 13 46 46 H 1.08996 * 109.47452 * 299.99795 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2101 -3.5578 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 7 2.1983 -5.9795 -0.0004 14 6 1.4980 -7.2708 -0.0003 15 1 0.5846 -7.1888 0.5887 16 6 1.1450 -7.6596 -1.4374 17 6 0.4151 -9.0043 -1.4372 18 6 1.3205 -10.0759 -0.8268 19 6 1.6736 -9.6871 0.6102 20 1 0.7600 -9.6047 1.1992 21 7 2.5400 -10.7136 1.1950 22 6 1.9983 -11.8098 1.7617 23 8 0.7894 -11.9473 1.7873 24 6 2.8658 -12.8372 2.3476 25 6 2.4501 -13.9875 2.9545 26 6 3.6072 -14.6697 3.3617 27 6 4.6648 -13.9117 2.9972 28 8 4.2140 -12.8083 2.3864 29 6 2.4039 -8.3422 0.6099 30 1 -0.4850 0.8401 0.0004 31 1 0.3534 -2.3906 -0.0005 32 1 0.6174 -4.9205 -0.8913 33 1 0.6168 -4.9209 0.8886 34 1 2.8338 -5.9124 -0.7813 35 1 2.0584 -7.7417 -2.0264 36 1 0.4996 -6.8963 -1.8721 37 1 0.1640 -9.2814 -2.4611 38 1 -0.4984 -8.9218 -0.8484 39 1 2.2340 -10.1584 -1.4158 40 1 0.8007 -11.0341 -0.8271 41 1 3.5036 -10.6042 1.1743 42 1 1.4289 -14.3108 3.0925 43 1 3.6450 -15.6198 3.8739 44 1 5.7026 -14.1555 3.1698 45 1 2.6554 -8.0653 1.6337 46 1 3.3173 -8.4243 0.0209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266043326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:48 Heat of formation + Delta-G solvation = -93.860551 kcal Electronic energy + Delta-G solvation = -27826.200980 eV Core-core repulsion = 23715.677147 eV Total energy + Delta-G solvation = -4110.523833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.63974 -41.08675 -40.21683 -39.29114 -36.50110 -35.85671 -34.59497 -33.99452 -33.25577 -31.58976 -30.91543 -29.72264 -27.73579 -25.70640 -24.87482 -23.20450 -22.75525 -22.39721 -21.48789 -21.23338 -20.83236 -19.91553 -19.45546 -17.96733 -17.37165 -17.30319 -17.18492 -16.76622 -16.35699 -16.05841 -15.98800 -15.76843 -15.41085 -15.23419 -14.92459 -14.84297 -14.26128 -14.23121 -13.98079 -13.89441 -13.62783 -13.54988 -13.46205 -13.25317 -13.14111 -12.83327 -12.41488 -12.34074 -12.12310 -12.11498 -11.85641 -11.62392 -11.52254 -11.48520 -11.27451 -11.05200 -10.34793 -10.27109 -10.01190 -9.64783 -9.26390 -8.46293 -5.95099 0.02016 1.38340 1.42096 1.42706 1.54946 1.64730 2.05737 2.07866 2.15774 2.29866 2.91505 3.20993 3.49679 3.66904 3.71487 3.92224 3.95767 3.99870 4.11669 4.13067 4.18327 4.34547 4.40395 4.41820 4.48648 4.54259 4.62117 4.62473 4.68697 4.89166 4.89791 4.95499 5.00467 5.08777 5.10905 5.23862 5.29431 5.35189 5.38933 5.41300 5.46043 5.83731 5.91595 6.12754 6.39590 6.44795 6.60448 6.97061 7.12901 7.56744 8.11884 8.71022 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023819 B = 0.001772 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.262710 B =15798.481040 C =16429.384876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.574 5.574 10 C 0.438 3.562 11 O -0.623 6.623 12 C 0.066 3.934 13 N -0.675 5.675 14 C 0.095 3.905 15 H 0.080 0.920 16 C -0.147 4.147 17 C -0.106 4.106 18 C -0.122 4.122 19 C 0.152 3.848 20 H 0.077 0.923 21 N -0.704 5.704 22 C 0.601 3.399 23 O -0.559 6.559 24 C -0.111 4.111 25 C -0.127 4.127 26 C -0.235 4.235 27 C 0.010 3.990 28 O -0.171 6.171 29 C -0.103 4.103 30 H 0.277 0.723 31 H 0.396 0.604 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.346 0.654 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.415 0.585 42 H 0.158 0.842 43 H 0.182 0.818 44 H 0.254 0.746 45 H 0.068 0.932 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.362 -29.386 1.910 29.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.211 5.211 10 C 0.225 3.775 11 O -0.509 6.509 12 C -0.067 4.067 13 N -0.307 5.307 14 C -0.016 4.016 15 H 0.099 0.901 16 C -0.186 4.186 17 C -0.144 4.144 18 C -0.160 4.160 19 C 0.047 3.953 20 H 0.095 0.905 21 N -0.353 5.353 22 C 0.389 3.611 23 O -0.440 6.440 24 C -0.163 4.163 25 C -0.148 4.148 26 C -0.254 4.254 27 C -0.059 4.059 28 O -0.067 6.067 29 C -0.142 4.142 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.165 0.835 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.251 0.749 42 H 0.175 0.825 43 H 0.200 0.800 44 H 0.270 0.730 45 H 0.087 0.913 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.429 -29.007 2.483 29.448 hybrid contribution -0.267 0.824 -0.725 1.130 sum 4.162 -28.183 1.758 28.543 Atomic orbital electron populations 1.69673 1.06832 1.29282 1.50313 1.26049 0.96552 1.02433 0.96280 0.84921 0.77856 0.76852 0.78659 1.19557 1.19592 1.19820 1.19676 0.92728 0.84057 1.49956 0.90284 1.41941 1.09335 1.04745 1.65066 1.20893 0.88263 0.86166 0.82141 1.90486 1.15833 1.87977 1.56648 1.21546 0.94094 0.88078 1.02941 1.60112 1.18683 1.00424 1.51434 1.21528 0.96392 0.87687 0.95959 0.90129 1.22286 1.01319 0.97943 0.97048 1.21367 0.98117 0.93317 1.01634 1.21868 1.00607 0.98795 0.94779 1.20977 0.93586 0.86268 0.94451 0.90533 1.45907 1.11480 1.20001 1.57926 1.16757 0.86177 0.80811 0.77363 1.90859 1.14286 1.78297 1.60576 1.21881 0.81407 1.00690 1.12283 1.22264 1.01803 0.93156 0.97570 1.22226 0.90890 1.04256 1.08032 1.25382 1.02123 0.83629 0.94809 1.84062 1.20140 1.40843 1.61622 1.21629 0.98867 0.91484 1.02199 0.91317 0.76995 0.91460 0.88136 0.83453 0.91106 0.91846 0.90438 0.91676 0.90697 0.92422 0.74862 0.82461 0.80029 0.73029 0.91328 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.81 13.05 21.66 0.28 -49.53 16 2 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 3 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.33 -19.10 9.68 84.04 0.81 -18.28 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.57 -29.55 5.29 -306.98 -1.62 -31.17 16 10 C 0.44 20.81 7.82 87.66 0.69 21.49 16 11 O -0.62 -34.45 15.78 -3.06 -0.05 -34.50 16 12 C 0.07 2.23 5.97 85.56 0.51 2.74 16 13 N -0.68 -20.47 5.87 -495.59 -2.91 -23.38 16 14 C 0.09 2.10 2.47 44.91 0.11 2.22 16 15 H 0.08 1.80 7.80 -2.38 -0.02 1.79 16 16 C -0.15 -2.77 5.17 30.59 0.16 -2.61 16 17 C -0.11 -1.75 5.92 30.59 0.18 -1.57 16 18 C -0.12 -2.12 5.49 30.59 0.17 -1.95 16 19 C 0.15 2.90 2.45 45.01 0.11 3.01 16 20 H 0.08 1.74 7.57 -2.38 -0.02 1.72 16 21 N -0.70 -12.97 5.07 -446.43 -2.27 -15.23 16 22 C 0.60 13.70 7.75 86.44 0.67 14.37 16 23 O -0.56 -16.36 16.53 -4.34 -0.07 -16.44 16 24 C -0.11 -2.14 7.13 24.08 0.17 -1.97 16 25 C -0.13 -2.14 10.62 22.39 0.24 -1.90 16 26 C -0.24 -2.44 10.87 22.07 0.24 -2.20 16 27 C 0.01 0.08 12.08 67.10 0.81 0.89 16 28 O -0.17 -2.56 10.40 -4.95 -0.05 -2.61 16 29 C -0.10 -2.04 5.00 30.61 0.15 -1.89 16 30 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 31 H 0.40 19.39 7.90 -92.71 -0.73 18.65 16 32 H 0.07 1.99 7.44 -2.39 -0.02 1.98 16 33 H 0.10 3.14 8.05 -2.39 -0.02 3.12 16 34 H 0.35 10.94 8.17 -89.69 -0.73 10.21 16 35 H 0.07 1.30 8.13 -2.38 -0.02 1.28 16 36 H 0.06 1.26 7.45 -2.39 -0.02 1.24 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.41 6.04 8.36 -92.71 -0.77 5.27 16 42 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 43 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 44 H 0.25 -0.36 8.06 -2.91 -0.02 -0.38 16 45 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -73.82 386.16 -0.38 -74.20 By element: Atomic # 1 Polarization: 42.69 SS G_CDS: -1.21 Total: 41.48 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 5.49 Total: 12.10 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -6.52 Total: -119.31 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: -0.17 Total: -53.54 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -73.82 -0.38 -74.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266043326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.665 kcal (2) G-P(sol) polarization free energy of solvation -73.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds