Wall clock time and date at job start Tue Mar 31 2020 18:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00254 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00205 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00004 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99844 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.46731 * 34.99933 * 14 13 12 16 16 C 1.52996 * 109.47135 * 274.99848 * 14 13 12 17 17 C 1.52998 * 109.47082 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47186 * 59.99803 * 17 16 14 19 19 C 1.52996 * 109.47271 * 300.00082 * 18 17 16 20 20 H 1.09001 * 109.47292 * 179.97438 * 19 18 17 21 21 N 1.46497 * 109.47365 * 299.99973 * 19 18 17 22 22 C 1.34774 * 119.99930 * 275.00189 * 21 19 18 23 23 O 1.21703 * 120.00221 * 359.97438 * 22 21 19 24 24 C 1.46657 * 120.00261 * 179.97438 * 22 21 19 25 25 C 1.36542 * 125.99012 * 179.97438 * 24 22 21 26 26 C 1.40365 * 106.70560 * 179.97438 * 25 24 22 27 27 C 1.35129 * 107.12105 * 0.02562 * 26 25 24 28 28 O 1.33936 * 108.75935 * 359.75294 * 27 26 25 29 29 C 1.53000 * 109.46776 * 154.99859 * 14 13 12 30 30 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 32 32 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 33 33 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 34 34 H 1.00895 * 110.99935 * 56.04274 * 13 12 10 35 35 H 1.08998 * 109.47251 * 300.00226 * 16 14 13 36 36 H 1.09001 * 109.47292 * 60.00263 * 16 14 13 37 37 H 1.09007 * 109.47244 * 299.99865 * 17 16 14 38 38 H 1.08999 * 109.47065 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.47588 * 180.02562 * 18 17 16 40 40 H 1.09007 * 109.47353 * 60.00287 * 18 17 16 41 41 H 0.97000 * 119.99906 * 94.99833 * 21 19 18 42 42 H 1.08000 * 126.64563 * 359.96332 * 25 24 22 43 43 H 1.08007 * 126.44041 * 179.97438 * 26 25 24 44 44 H 1.07995 * 125.61760 * 180.02562 * 27 26 25 45 45 H 1.08999 * 109.47383 * 299.99942 * 29 14 13 46 46 H 1.08998 * 109.47055 * 60.00114 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 7 2.1986 -5.9795 -0.0256 14 6 1.4983 -7.2708 -0.0323 15 1 0.5853 -7.1859 -0.6217 16 6 1.1441 -7.6664 1.4025 17 6 0.4153 -9.0116 1.3956 18 6 1.3221 -10.0797 0.7811 19 6 1.6763 -9.6842 -0.6537 20 1 2.3227 -10.4449 -1.0914 21 7 0.4493 -9.5707 -1.4460 22 6 -0.0874 -10.6667 -2.0179 23 8 0.4475 -11.7507 -1.8765 24 6 -1.3161 -10.5533 -2.8106 25 6 -1.9616 -11.5780 -3.4412 26 6 -3.0831 -11.0196 -4.0743 27 6 -3.0728 -9.6952 -3.8062 28 8 -2.0093 -9.4189 -3.0403 29 6 2.4047 -8.3392 -0.6470 30 1 -0.4849 0.8400 0.0004 31 1 0.3535 -2.3907 -0.0068 32 1 0.6169 -4.9255 0.8690 33 1 0.6176 -4.9158 -0.9109 34 1 2.8329 -5.9165 0.7565 35 1 2.0571 -7.7512 1.9919 36 1 0.4984 -6.9052 1.8404 37 1 -0.4977 -8.9272 0.8061 38 1 0.1626 -9.2932 2.4178 39 1 0.8027 -11.0381 0.7757 40 1 2.2351 -10.1642 1.3706 41 1 0.0231 -8.7066 -1.5590 42 1 -1.6664 -12.6168 -3.4512 43 1 -3.8160 -11.5488 -4.6653 44 1 -3.8043 -8.9784 -4.1491 45 1 2.6570 -8.0574 -1.6692 46 1 3.3176 -8.4241 -0.0576 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266043328.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:55 Heat of formation + Delta-G solvation = -65.744622 kcal Electronic energy + Delta-G solvation = -28526.006310 eV Core-core repulsion = 24416.701675 eV Total energy + Delta-G solvation = -4109.304635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.99876 -40.41398 -38.72803 -37.94976 -35.21959 -33.95132 -33.52841 -33.14076 -31.24879 -30.88371 -29.92620 -29.09795 -26.14972 -24.23956 -23.85706 -22.60249 -22.10133 -21.69678 -20.87189 -19.60872 -19.13109 -18.89373 -17.90011 -16.79340 -16.65492 -16.37135 -15.97572 -15.50764 -15.10718 -14.96449 -14.82239 -14.48968 -14.22298 -13.94327 -13.76500 -13.54129 -13.34290 -13.29177 -13.05394 -13.03320 -12.53063 -12.38472 -12.37190 -12.02934 -11.69546 -11.53351 -11.31087 -11.06561 -10.94416 -10.59945 -10.53296 -10.41889 -10.41078 -10.37093 -10.22144 -9.52322 -9.42484 -8.99832 -8.47546 -8.05015 -7.96908 -6.43232 -3.83961 0.74190 2.01436 2.35885 2.90476 2.94579 3.16849 3.25530 3.31324 3.89165 4.02440 4.24219 4.35172 4.54108 4.56141 4.56686 4.67656 4.83473 4.94854 4.99758 5.15615 5.21039 5.24131 5.27134 5.36268 5.40079 5.41937 5.47936 5.54780 5.58154 5.76042 5.81302 5.84658 5.91680 5.95375 5.96539 6.03992 6.09263 6.19420 6.25563 6.27405 6.48917 7.18888 7.20761 7.53909 7.64113 7.80171 8.04936 8.59815 9.16570 9.52853 10.04315 10.74552 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014169 B = 0.002315 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.646577 B =12092.016223 C =13478.153782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.662 5.662 14 C 0.087 3.913 15 H 0.072 0.928 16 C -0.153 4.153 17 C -0.113 4.113 18 C -0.131 4.131 19 C 0.147 3.853 20 H 0.093 0.907 21 N -0.709 5.709 22 C 0.604 3.396 23 O -0.524 6.524 24 C -0.081 4.081 25 C -0.121 4.121 26 C -0.228 4.228 27 C -0.003 4.003 28 O -0.163 6.163 29 C -0.115 4.115 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.351 0.649 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.406 0.594 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.211 0.789 45 H 0.080 0.920 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.889 -21.996 -3.219 23.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.293 5.293 14 C -0.023 4.023 15 H 0.090 0.910 16 C -0.192 4.192 17 C -0.152 4.152 18 C -0.169 4.169 19 C 0.043 3.957 20 H 0.111 0.889 21 N -0.361 5.361 22 C 0.390 3.610 23 O -0.402 6.402 24 C -0.133 4.133 25 C -0.142 4.142 26 C -0.247 4.247 27 C -0.073 4.073 28 O -0.058 6.058 29 C -0.154 4.154 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.171 0.829 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.242 0.758 42 H 0.177 0.823 43 H 0.174 0.826 44 H 0.228 0.772 45 H 0.098 0.902 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.586 -22.255 -3.656 23.495 hybrid contribution -1.132 1.168 0.690 1.767 sum -7.718 -21.087 -2.966 22.650 Atomic orbital electron populations 1.69609 1.05939 1.28157 1.50663 1.25264 0.95636 0.99727 0.97330 0.85859 0.79230 0.80795 0.78422 1.20377 1.20939 1.19415 1.19704 0.93373 0.82239 1.47540 0.87926 1.41867 1.09182 1.04624 1.64391 1.19821 0.88394 0.84730 0.84470 1.90525 1.13762 1.87071 1.55360 1.21705 0.94439 0.91030 1.01067 1.60184 1.18425 0.99482 1.51246 1.21564 0.96352 0.89722 0.94693 0.91027 1.22357 1.01140 0.97406 0.98315 1.21436 0.98476 0.94515 1.00740 1.21943 1.00695 0.98962 0.95329 1.21091 0.85060 0.98626 0.90959 0.88871 1.46087 1.27831 1.10469 1.51692 1.16556 0.81450 0.84736 0.78277 1.90878 1.60840 1.26877 1.61575 1.22143 0.97990 0.85035 1.08119 1.21984 0.94678 1.00264 0.97277 1.21882 1.01502 0.94567 1.06730 1.24478 0.90107 0.97727 0.95012 1.84088 1.32572 1.34208 1.54895 1.21800 0.98708 0.91852 1.03009 0.91877 0.77488 0.93868 0.89722 0.82918 0.91358 0.91742 0.92114 0.91941 0.91417 0.90608 0.75770 0.82278 0.82572 0.77224 0.90177 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 2 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 3 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 10 C 0.44 10.24 7.82 -10.98 -0.09 10.16 16 11 O -0.58 -15.69 15.78 5.55 0.09 -15.60 16 12 C 0.05 0.85 5.97 -4.97 -0.03 0.82 16 13 N -0.66 -10.04 5.87 -107.99 -0.63 -10.67 16 14 C 0.09 0.97 2.30 -67.71 -0.16 0.82 16 15 H 0.07 0.77 6.16 -51.93 -0.32 0.45 16 16 C -0.15 -1.53 5.17 -26.73 -0.14 -1.67 16 17 C -0.11 -1.01 5.77 -26.74 -0.15 -1.16 16 18 C -0.13 -1.17 5.60 -26.74 -0.15 -1.32 16 19 C 0.15 1.40 2.78 -67.96 -0.19 1.21 16 20 H 0.09 0.96 7.58 -51.93 -0.39 0.56 16 21 N -0.71 -6.96 4.23 -55.15 -0.23 -7.19 16 22 C 0.60 6.94 7.75 -12.86 -0.10 6.84 16 23 O -0.52 -7.35 16.53 5.19 0.09 -7.27 16 24 C -0.08 -0.84 7.13 -36.80 -0.26 -1.11 16 25 C -0.12 -1.12 10.62 -39.39 -0.42 -1.54 16 26 C -0.23 -1.62 10.87 -39.89 -0.43 -2.05 16 27 C 0.00 -0.02 12.08 29.63 0.36 0.34 16 28 O -0.16 -1.52 10.40 4.99 0.05 -1.47 16 29 C -0.12 -1.16 5.21 -26.76 -0.14 -1.30 16 30 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 32 H 0.04 0.66 7.43 -51.93 -0.39 0.28 16 33 H 0.08 1.33 8.06 -51.93 -0.42 0.91 16 34 H 0.35 5.57 8.17 -39.29 -0.32 5.24 16 35 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 36 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 37 H 0.06 0.56 7.60 -51.93 -0.39 0.16 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 41 H 0.41 3.69 6.62 -40.82 -0.27 3.42 16 42 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 43 H 0.16 0.72 8.06 -52.48 -0.42 0.29 16 44 H 0.21 0.62 8.06 -52.49 -0.42 0.19 16 45 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 381.73 15.07 5.75 5.75 Total: -1.00 -33.04 381.73 -7.91 -40.95 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -6.53 Total: 15.35 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -2.14 Total: 2.08 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.20 Total: -55.73 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: 0.23 Total: -24.34 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.04 -7.91 -40.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266043328.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.795 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds