Wall clock time and date at job start Tue Mar 31 2020 18:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00254 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00205 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00004 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99844 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.46731 * 34.99933 * 14 13 12 16 16 C 1.52996 * 109.47135 * 274.99848 * 14 13 12 17 17 C 1.52998 * 109.47082 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47186 * 59.99803 * 17 16 14 19 19 C 1.52996 * 109.47271 * 300.00082 * 18 17 16 20 20 H 1.09001 * 109.47292 * 179.97438 * 19 18 17 21 21 N 1.46497 * 109.47365 * 299.99973 * 19 18 17 22 22 C 1.34774 * 119.99930 * 275.00189 * 21 19 18 23 23 O 1.21703 * 120.00221 * 359.97438 * 22 21 19 24 24 C 1.46657 * 120.00261 * 179.97438 * 22 21 19 25 25 C 1.36542 * 125.99012 * 179.97438 * 24 22 21 26 26 C 1.40365 * 106.70560 * 179.97438 * 25 24 22 27 27 C 1.35129 * 107.12105 * 0.02562 * 26 25 24 28 28 O 1.33936 * 108.75935 * 359.75294 * 27 26 25 29 29 C 1.53000 * 109.46776 * 154.99859 * 14 13 12 30 30 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 32 32 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 33 33 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 34 34 H 1.00895 * 110.99935 * 56.04274 * 13 12 10 35 35 H 1.08998 * 109.47251 * 300.00226 * 16 14 13 36 36 H 1.09001 * 109.47292 * 60.00263 * 16 14 13 37 37 H 1.09007 * 109.47244 * 299.99865 * 17 16 14 38 38 H 1.08999 * 109.47065 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.47588 * 180.02562 * 18 17 16 40 40 H 1.09007 * 109.47353 * 60.00287 * 18 17 16 41 41 H 0.97000 * 119.99906 * 94.99833 * 21 19 18 42 42 H 1.08000 * 126.64563 * 359.96332 * 25 24 22 43 43 H 1.08007 * 126.44041 * 179.97438 * 26 25 24 44 44 H 1.07995 * 125.61760 * 180.02562 * 27 26 25 45 45 H 1.08999 * 109.47383 * 299.99942 * 29 14 13 46 46 H 1.08998 * 109.47055 * 60.00114 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 7 2.1986 -5.9795 -0.0256 14 6 1.4983 -7.2708 -0.0323 15 1 0.5853 -7.1859 -0.6217 16 6 1.1441 -7.6664 1.4025 17 6 0.4153 -9.0116 1.3956 18 6 1.3221 -10.0797 0.7811 19 6 1.6763 -9.6842 -0.6537 20 1 2.3227 -10.4449 -1.0914 21 7 0.4493 -9.5707 -1.4460 22 6 -0.0874 -10.6667 -2.0179 23 8 0.4475 -11.7507 -1.8765 24 6 -1.3161 -10.5533 -2.8106 25 6 -1.9616 -11.5780 -3.4412 26 6 -3.0831 -11.0196 -4.0743 27 6 -3.0728 -9.6952 -3.8062 28 8 -2.0093 -9.4189 -3.0403 29 6 2.4047 -8.3392 -0.6470 30 1 -0.4849 0.8400 0.0004 31 1 0.3535 -2.3907 -0.0068 32 1 0.6169 -4.9255 0.8690 33 1 0.6176 -4.9158 -0.9109 34 1 2.8329 -5.9165 0.7565 35 1 2.0571 -7.7512 1.9919 36 1 0.4984 -6.9052 1.8404 37 1 -0.4977 -8.9272 0.8061 38 1 0.1626 -9.2932 2.4178 39 1 0.8027 -11.0381 0.7757 40 1 2.2351 -10.1642 1.3706 41 1 0.0231 -8.7066 -1.5590 42 1 -1.6664 -12.6168 -3.4512 43 1 -3.8160 -11.5488 -4.6653 44 1 -3.8043 -8.9784 -4.1491 45 1 2.6570 -8.0574 -1.6692 46 1 3.3176 -8.4241 -0.0576 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266043328.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:54 Heat of formation + Delta-G solvation = -89.944926 kcal Electronic energy + Delta-G solvation = -28527.055713 eV Core-core repulsion = 24416.701675 eV Total energy + Delta-G solvation = -4110.354039 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.63257 -41.27827 -40.18154 -39.25946 -36.42344 -35.78682 -34.36788 -33.92164 -33.25275 -31.65057 -30.89251 -29.93848 -27.74629 -25.70254 -24.81691 -23.38381 -22.73488 -22.59967 -21.64567 -21.12102 -20.25161 -19.88246 -19.61560 -17.94473 -17.36512 -17.31425 -17.04393 -16.73871 -16.36461 -16.22599 -15.99513 -15.81779 -15.51622 -15.10954 -15.00378 -14.64108 -14.23944 -14.18808 -13.94391 -13.75502 -13.58175 -13.55767 -13.27955 -13.24207 -13.16686 -13.02069 -12.81069 -12.41419 -12.19262 -12.12261 -11.75388 -11.51351 -11.45653 -11.41173 -11.22495 -11.04279 -10.34091 -10.25446 -10.00920 -9.63930 -9.24800 -8.46439 -5.94901 0.03415 1.38216 1.42169 1.43395 1.54611 1.68989 2.06086 2.09891 2.22054 2.29335 2.88693 3.21071 3.48744 3.68485 3.75490 3.78615 3.96575 4.00039 4.11865 4.16605 4.17198 4.31305 4.39609 4.45696 4.54558 4.59984 4.60992 4.63464 4.70684 4.81146 4.90277 4.96708 5.03546 5.08113 5.11730 5.23389 5.30356 5.35983 5.39544 5.41573 5.47910 5.85061 5.91883 6.13374 6.39878 6.43109 6.60777 6.97773 7.13287 7.57074 8.12490 8.70977 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014169 B = 0.002315 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.646577 B =12092.016223 C =13478.153782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.991 3.009 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.333 4.333 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.066 3.934 13 N -0.675 5.675 14 C 0.091 3.909 15 H 0.079 0.921 16 C -0.146 4.146 17 C -0.106 4.106 18 C -0.126 4.126 19 C 0.152 3.848 20 H 0.086 0.914 21 N -0.702 5.702 22 C 0.602 3.398 23 O -0.558 6.558 24 C -0.112 4.112 25 C -0.126 4.126 26 C -0.234 4.234 27 C 0.007 3.993 28 O -0.173 6.173 29 C -0.107 4.107 30 H 0.278 0.722 31 H 0.396 0.604 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.346 0.654 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.410 0.590 42 H 0.160 0.840 43 H 0.182 0.818 44 H 0.250 0.750 45 H 0.069 0.931 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.465 -21.966 -3.448 24.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.463 4.463 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.067 4.067 13 N -0.306 5.306 14 C -0.019 4.019 15 H 0.097 0.903 16 C -0.185 4.185 17 C -0.145 4.145 18 C -0.164 4.164 19 C 0.047 3.953 20 H 0.104 0.896 21 N -0.353 5.353 22 C 0.390 3.610 23 O -0.439 6.439 24 C -0.163 4.163 25 C -0.147 4.147 26 C -0.253 4.253 27 C -0.062 4.062 28 O -0.068 6.068 29 C -0.145 4.145 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.084 0.916 33 H 0.121 0.879 34 H 0.165 0.835 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.247 0.753 42 H 0.178 0.822 43 H 0.200 0.800 44 H 0.266 0.734 45 H 0.088 0.912 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.194 -22.227 -3.885 24.005 hybrid contribution -0.692 1.108 0.707 1.486 sum -8.886 -21.118 -3.177 23.131 Atomic orbital electron populations 1.69665 1.06782 1.29281 1.50384 1.26022 0.96543 1.02356 0.96319 0.84950 0.77916 0.76980 0.78640 1.19694 1.19517 1.19792 1.19656 0.92681 0.84073 1.49870 0.90387 1.41935 1.09329 1.04722 1.65095 1.20920 0.88263 0.86204 0.82109 1.90494 1.15906 1.87983 1.56613 1.21558 0.94097 0.88076 1.02950 1.60178 1.18655 1.00458 1.51327 1.21612 0.96431 0.87981 0.95856 0.90294 1.22273 1.01294 0.97795 0.97181 1.21377 0.98130 0.93706 1.01262 1.21897 1.01147 0.98485 0.94872 1.21035 0.84869 0.97962 0.91393 0.89627 1.46040 1.27645 1.10339 1.51236 1.16722 0.81712 0.84465 0.78113 1.90846 1.62051 1.28006 1.63036 1.21972 0.98598 0.85920 1.09858 1.22255 0.95269 1.00283 0.96906 1.22221 1.01306 0.94901 1.06857 1.25351 0.89274 0.98588 0.93026 1.84076 1.33313 1.33889 1.55568 1.21703 0.98791 0.91664 1.02352 0.91299 0.76965 0.91576 0.87902 0.83502 0.91117 0.92060 0.92237 0.91025 0.92331 0.89494 0.75251 0.82247 0.80015 0.73394 0.91237 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.15 13.05 21.67 0.28 -48.87 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 3 Si 0.99 42.64 29.55 68.60 2.03 44.67 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.33 -18.81 9.68 84.04 0.81 -17.99 16 8 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 9 N -0.57 -29.04 5.29 -306.97 -1.62 -30.67 16 10 C 0.44 20.42 7.82 87.66 0.69 21.11 16 11 O -0.62 -34.18 15.78 -3.07 -0.05 -34.23 16 12 C 0.07 2.14 5.97 85.56 0.51 2.65 16 13 N -0.68 -19.76 5.87 -495.58 -2.91 -22.67 16 14 C 0.09 1.89 2.30 44.91 0.10 1.99 16 15 H 0.08 1.54 6.16 -2.39 -0.01 1.53 16 16 C -0.15 -2.65 5.17 30.59 0.16 -2.49 16 17 C -0.11 -1.71 5.77 30.59 0.18 -1.53 16 18 C -0.13 -2.10 5.60 30.59 0.17 -1.93 16 19 C 0.15 2.80 2.78 44.98 0.13 2.93 16 20 H 0.09 1.76 7.58 -2.39 -0.02 1.74 16 21 N -0.70 -13.47 4.23 -446.60 -1.89 -15.36 16 22 C 0.60 13.98 7.75 86.44 0.67 14.65 16 23 O -0.56 -16.10 16.53 -4.36 -0.07 -16.18 16 24 C -0.11 -2.30 7.13 24.07 0.17 -2.13 16 25 C -0.13 -2.26 10.62 22.39 0.24 -2.02 16 26 C -0.23 -2.83 10.87 22.07 0.24 -2.59 16 27 C 0.01 0.08 12.08 67.10 0.81 0.89 16 28 O -0.17 -3.00 10.40 -5.07 -0.05 -3.05 16 29 C -0.11 -2.06 5.21 30.58 0.16 -1.90 16 30 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 31 H 0.40 18.98 7.90 -92.71 -0.73 18.25 16 32 H 0.07 1.88 7.43 -2.38 -0.02 1.87 16 33 H 0.10 3.02 8.06 -2.39 -0.02 3.00 16 34 H 0.35 10.75 8.17 -89.70 -0.73 10.02 16 35 H 0.07 1.27 8.13 -2.39 -0.02 1.25 16 36 H 0.06 1.18 7.45 -2.39 -0.02 1.16 16 37 H 0.06 0.99 7.60 -2.38 -0.02 0.97 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.41 7.09 6.62 -92.71 -0.61 6.47 16 42 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 43 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 44 H 0.25 0.47 8.06 -2.91 -0.02 0.45 16 45 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -72.37 381.73 0.17 -72.19 By element: Atomic # 1 Polarization: 43.79 SS G_CDS: -1.04 Total: 42.75 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 5.50 Total: 11.42 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -6.14 Total: -117.57 kcal Atomic # 8 Polarization: -53.29 SS G_CDS: -0.17 Total: -53.46 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -72.37 0.17 -72.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266043328.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.752 kcal (2) G-P(sol) polarization free energy of solvation -72.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds