Wall clock time and date at job start Tue Mar 31 2020 18:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 120.00065 * 2 1 4 4 H 1.48503 * 109.46868 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46927 * 299.99516 * 3 2 1 6 6 H 1.48502 * 109.47160 * 59.99899 * 3 2 1 7 7 C 1.38810 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00094 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00051 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.47129 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47101 * 180.02562 * 11 10 9 13 13 H 1.08997 * 109.52627 * 54.91652 * 12 11 10 14 14 C 1.53037 * 109.49594 * 175.00112 * 12 11 10 15 15 C 1.53042 * 109.52527 * 181.31035 * 14 12 11 16 16 C 1.53193 * 109.31160 * 298.63841 * 15 14 12 17 17 N 1.46925 * 108.77629 * 54.63873 * 16 15 14 18 18 C 1.34770 * 120.63566 * 126.37153 * 17 16 15 19 19 O 1.21597 * 119.99683 * 353.76902 * 18 17 16 20 20 C 1.47493 * 120.00293 * 173.77481 * 18 17 16 21 21 C 1.37810 * 126.77238 * 152.39055 * 20 18 17 22 22 O 1.33498 * 108.33957 * 179.97438 * 21 20 18 23 23 C 1.34884 * 109.88861 * 359.97438 * 22 21 20 24 24 C 1.46776 * 125.65465 * 179.97438 * 23 22 21 25 25 N 1.34781 * 119.99853 * 0.02562 * 24 23 22 26 26 O 1.21681 * 120.00172 * 180.02562 * 24 23 22 27 27 C 1.36061 * 108.69151 * 359.76830 * 23 22 21 28 28 C 1.46930 * 118.73556 * 306.38773 * 17 16 15 29 29 H 0.97001 * 119.99699 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00026 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.46642 * 60.00797 * 10 9 7 32 32 H 1.08999 * 109.47325 * 300.00516 * 10 9 7 33 33 H 1.08993 * 109.46639 * 59.99941 * 11 10 9 34 34 H 1.09002 * 109.46508 * 300.00199 * 11 10 9 35 35 H 1.09000 * 109.46344 * 61.29943 * 14 12 11 36 36 H 1.08997 * 109.46092 * 301.31559 * 14 12 11 37 37 H 1.08994 * 109.50203 * 58.58892 * 15 14 12 38 38 H 1.09002 * 109.49866 * 178.65905 * 15 14 12 39 39 H 1.08996 * 109.58852 * 174.42428 * 16 15 14 40 40 H 1.08999 * 109.58666 * 294.85221 * 16 15 14 41 41 H 1.07997 * 125.83050 * 359.97254 * 21 20 18 42 42 H 0.97001 * 119.99957 * 0.02562 * 25 24 23 43 43 H 0.96998 * 119.99888 * 179.97438 * 25 24 23 44 44 H 1.07994 * 126.68900 * 180.26531 * 27 23 22 45 45 H 1.09004 * 109.58709 * 173.39365 * 28 17 16 46 46 H 1.08996 * 109.58993 * 293.68020 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0637 -4.8198 0.0022 12 6 1.8286 -6.1448 0.0029 13 1 2.5222 -6.1646 0.8435 14 6 0.8394 -7.3056 0.1292 15 6 1.6061 -8.6296 0.1628 16 6 2.3845 -8.7977 -1.1459 17 7 3.2321 -7.6146 -1.3472 18 6 4.5557 -7.7469 -1.5639 19 8 5.0787 -8.8416 -1.4820 20 6 5.3698 -6.5639 -1.9002 21 6 6.7122 -6.3862 -1.6438 22 8 7.0722 -5.1856 -2.1030 23 6 6.0079 -4.5672 -2.6547 24 6 6.0153 -3.2319 -3.2640 25 7 7.1564 -2.5158 -3.3043 26 8 4.9912 -2.7714 -3.7328 27 6 4.9275 -5.3884 -2.5568 28 6 2.6093 -6.2844 -1.3075 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0016 31 1 2.6852 -3.7141 0.8912 32 1 2.6841 -3.7149 -0.8888 33 1 0.4368 -4.7621 -0.8875 34 1 0.4374 -4.7617 0.8925 35 1 0.1618 -7.2999 -0.7246 36 1 0.2654 -7.1950 1.0492 37 1 2.3017 -8.6261 1.0019 38 1 0.9028 -9.4546 0.2768 39 1 3.0091 -9.6890 -1.0877 40 1 1.6857 -8.8923 -1.9771 41 1 7.3619 -7.0969 -1.1547 42 1 7.9729 -2.8831 -2.9310 43 1 7.1613 -1.6336 -3.7073 44 1 3.9273 -5.1835 -2.9090 45 1 3.3824 -5.5174 -1.3558 46 1 1.9309 -6.1731 -2.1533 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267888076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:50 Heat of formation + Delta-G solvation = -75.884563 kcal Electronic energy + Delta-G solvation = -29689.325958 eV Core-core repulsion = 25579.581623 eV Total energy + Delta-G solvation = -4109.744336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.99737 -41.20743 -40.32032 -38.94057 -36.86455 -35.22093 -34.81726 -34.58378 -33.23089 -32.28638 -31.12165 -29.01275 -26.98097 -25.98595 -24.99450 -24.52289 -23.58609 -22.38507 -21.67921 -21.28389 -20.35509 -19.17369 -19.08502 -18.32339 -17.74373 -17.48182 -17.39156 -16.85570 -16.70385 -16.24803 -15.93500 -15.54588 -15.48049 -15.37147 -15.30490 -15.09149 -14.70615 -14.49185 -14.27372 -14.09156 -13.94237 -13.68785 -13.29935 -12.98545 -12.84208 -12.60680 -12.31986 -12.10631 -11.98548 -11.88283 -11.74862 -11.74094 -11.54273 -11.31968 -11.30663 -10.96817 -10.88628 -10.79587 -9.95499 -9.66437 -8.99442 -7.95637 -5.23882 -0.15187 0.44198 1.40821 1.44316 1.46506 1.55773 1.80639 1.91054 2.12347 2.45583 2.55310 3.30222 3.38203 3.62320 3.63868 3.71409 3.79385 3.89778 4.06976 4.09914 4.19329 4.28479 4.29763 4.39224 4.49516 4.56972 4.66102 4.69637 4.72599 4.83088 4.86563 4.87891 4.99442 5.00097 5.06966 5.21340 5.32786 5.37168 5.42675 5.47579 5.50822 5.53745 5.73488 6.23875 6.26450 6.27585 6.98608 7.09477 7.33598 8.09495 8.32897 9.28241 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008594 B = 0.004453 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3257.193917 B = 6285.913589 C = 9121.106510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.969 3.031 4 H -0.268 1.268 5 H -0.293 1.293 6 H -0.289 1.289 7 C -0.241 4.241 8 H 0.068 0.932 9 N -0.745 5.745 10 C 0.152 3.848 11 C -0.106 4.106 12 C -0.086 4.086 13 H 0.069 0.931 14 C -0.112 4.112 15 C -0.124 4.124 16 C 0.107 3.893 17 N -0.599 5.599 18 C 0.592 3.408 19 O -0.571 6.571 20 C -0.266 4.266 21 C 0.099 3.901 22 O -0.140 6.140 23 C -0.092 4.092 24 C 0.602 3.398 25 N -0.820 5.820 26 O -0.561 6.561 27 C -0.097 4.097 28 C 0.097 3.903 29 H 0.251 0.749 30 H 0.375 0.625 31 H 0.012 0.988 32 H 0.016 0.984 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.263 0.737 42 H 0.421 0.579 43 H 0.419 0.581 44 H 0.163 0.837 45 H 0.091 0.909 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.567 -18.315 -3.289 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.220 1.220 6 H -0.216 1.216 7 C -0.373 4.373 8 H 0.086 0.914 9 N -0.388 5.388 10 C 0.026 3.974 11 C -0.145 4.145 12 C -0.106 4.106 13 H 0.087 0.913 14 C -0.150 4.150 15 C -0.162 4.162 16 C -0.014 4.014 17 N -0.330 5.330 18 C 0.382 3.618 19 O -0.453 6.453 20 C -0.270 4.270 21 C 0.026 3.974 22 O -0.033 6.033 23 C -0.143 4.143 24 C 0.386 3.614 25 N -0.384 5.384 26 O -0.441 6.441 27 C -0.118 4.118 28 C -0.025 4.025 29 H 0.060 0.940 30 H 0.206 0.794 31 H 0.030 0.970 32 H 0.034 0.966 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.279 0.721 42 H 0.253 0.747 43 H 0.252 0.748 44 H 0.180 0.820 45 H 0.109 0.891 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.571 -18.488 -3.500 23.200 hybrid contribution -0.031 1.436 -0.016 1.436 sum 13.540 -17.052 -3.517 22.056 Atomic orbital electron populations 1.69813 1.06484 1.25972 1.59676 1.25521 0.96419 1.00946 1.03719 0.85136 0.78214 0.80012 0.76836 1.19273 1.21973 1.21580 1.19576 0.91174 0.85564 1.40977 0.91402 1.42572 1.05655 1.01268 1.89300 1.20841 0.94311 0.85229 0.97040 1.21611 0.97768 0.92572 1.02519 1.21344 0.97485 0.94514 0.97216 0.91259 1.21582 0.97219 0.92885 1.03282 1.21860 0.99350 0.98404 0.96604 1.21821 0.93478 0.87443 0.98699 1.47985 1.06826 1.08503 1.69643 1.17357 0.81696 0.86880 0.75914 1.90750 1.72095 1.27823 1.54606 1.20598 0.96368 0.97496 1.12588 1.25686 0.94213 0.84255 0.93234 1.83952 1.35245 1.26734 1.57393 1.21679 0.86774 0.96566 1.09273 1.16694 0.84307 0.82315 0.78052 1.43486 1.10987 1.21693 1.62265 1.90999 1.34053 1.70168 1.48839 1.22215 0.99839 0.91770 0.97973 1.22385 0.98163 0.83474 0.98509 0.93966 0.79358 0.96968 0.96577 0.91633 0.91467 0.90810 0.90728 0.92201 0.88222 0.89457 0.89869 0.72097 0.74696 0.74834 0.81970 0.89085 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.62 13.06 21.65 0.28 -60.34 16 2 C -0.07 -4.38 5.50 84.86 0.47 -3.92 16 3 Si 0.97 47.54 29.55 68.60 2.03 49.57 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 7 C -0.24 -14.05 9.99 84.03 0.84 -13.22 16 8 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 9 N -0.75 -39.29 5.60 -343.44 -1.92 -41.21 16 10 C 0.15 6.20 6.02 86.38 0.52 6.72 16 11 C -0.11 -3.27 4.80 30.60 0.15 -3.12 16 12 C -0.09 -2.04 2.34 -10.73 -0.03 -2.07 16 13 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 14 C -0.11 -2.06 5.17 30.62 0.16 -1.90 16 15 C -0.12 -1.97 6.08 30.67 0.19 -1.79 16 16 C 0.11 1.98 6.44 86.36 0.56 2.53 16 17 N -0.60 -13.68 2.97 -822.75 -2.45 -16.13 16 18 C 0.59 15.06 7.64 86.68 0.66 15.72 16 19 O -0.57 -16.77 16.44 -4.02 -0.07 -16.84 16 20 C -0.27 -6.11 5.60 -20.08 -0.11 -6.22 16 21 C 0.10 1.65 12.04 67.72 0.82 2.47 16 22 O -0.14 -2.52 10.33 -0.78 -0.01 -2.53 16 23 C -0.09 -2.23 7.09 24.00 0.17 -2.06 16 24 C 0.60 16.30 8.06 86.47 0.70 17.00 16 25 N -0.82 -13.93 8.87 -176.32 -1.56 -15.50 16 26 O -0.56 -21.00 17.68 -4.29 -0.08 -21.08 16 27 C -0.10 -2.50 8.14 22.63 0.18 -2.32 16 28 C 0.10 2.32 4.13 86.35 0.36 2.68 16 29 H 0.25 15.17 8.31 -92.71 -0.77 14.39 16 30 H 0.37 20.73 7.67 -92.71 -0.71 20.02 16 31 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.02 0.68 6.70 -2.39 -0.02 0.66 16 33 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 36 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.10 1.14 8.14 -2.39 -0.02 1.13 16 39 H 0.09 1.74 7.00 -2.39 -0.02 1.73 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.26 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.42 4.35 8.57 -92.71 -0.79 3.56 16 43 H 0.42 6.15 8.93 -92.71 -0.83 5.33 16 44 H 0.16 4.50 6.43 -2.91 -0.02 4.48 16 45 H 0.09 2.46 2.81 -2.39 -0.01 2.45 16 46 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -79.96 378.58 0.57 -79.39 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -1.28 Total: 34.15 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 5.62 Total: 10.51 kcal Atomic # 7 Polarization: -127.53 SS G_CDS: -5.65 Total: -133.18 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -0.15 Total: -40.44 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -79.96 0.57 -79.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267888076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.503 kcal (2) G-P(sol) polarization free energy of solvation -79.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds