Wall clock time and date at job start Tue Mar 31 2020 18:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86799 * 120.00345 * 2 1 4 4 H 1.48503 * 109.47279 * 270.00374 * 3 2 1 5 5 H 1.48505 * 109.46806 * 29.99700 * 3 2 1 6 6 H 1.48490 * 109.47499 * 149.99918 * 3 2 1 7 7 C 1.38811 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00377 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00159 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00296 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47433 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47392 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.49629 * 304.93255 * 12 11 10 14 14 C 1.53039 * 109.49905 * 184.83412 * 12 11 10 15 15 C 1.53044 * 109.53964 * 178.67845 * 14 12 11 16 16 C 1.53191 * 109.30652 * 61.37037 * 15 14 12 17 17 N 1.46930 * 108.77617 * 305.35835 * 16 15 14 18 18 C 1.34779 * 120.63209 * 233.63437 * 17 16 15 19 19 O 1.21600 * 119.99580 * 173.97250 * 18 17 16 20 20 C 1.47487 * 120.00139 * 353.96646 * 18 17 16 21 21 C 1.37809 * 126.77183 * 327.79796 * 20 18 17 22 22 O 1.33497 * 108.33836 * 179.97438 * 21 20 18 23 23 C 1.34884 * 109.89162 * 359.97438 * 22 21 20 24 24 C 1.46778 * 125.65666 * 179.97438 * 23 22 21 25 25 N 1.34773 * 119.99723 * 0.02779 * 24 23 22 26 26 O 1.21674 * 119.99979 * 180.02562 * 24 23 22 27 27 C 1.36056 * 108.68694 * 359.76245 * 23 22 21 28 28 C 1.46929 * 118.73529 * 53.61778 * 17 16 15 29 29 H 0.97004 * 120.00550 * 0.02562 * 1 2 3 30 30 H 0.96992 * 119.99450 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.46886 * 59.99272 * 10 9 7 32 32 H 1.09002 * 109.47130 * 300.00010 * 10 9 7 33 33 H 1.09002 * 109.47358 * 59.99346 * 11 10 9 34 34 H 1.09002 * 109.46894 * 300.00061 * 11 10 9 35 35 H 1.09001 * 109.46459 * 298.70514 * 14 12 11 36 36 H 1.09009 * 109.45699 * 58.66213 * 14 12 11 37 37 H 1.09004 * 109.49752 * 181.31691 * 15 14 12 38 38 H 1.08997 * 109.50183 * 301.38663 * 15 14 12 39 39 H 1.08990 * 109.59237 * 65.15172 * 16 15 14 40 40 H 1.09006 * 109.58287 * 185.43753 * 16 15 14 41 41 H 1.08001 * 125.83419 * 359.92330 * 21 20 18 42 42 H 0.97003 * 120.00630 * 359.97438 * 25 24 23 43 43 H 0.97007 * 119.99971 * 179.97438 * 25 24 23 44 44 H 1.08000 * 126.68599 * 180.26562 * 27 23 22 45 45 H 1.08991 * 109.58465 * 186.60447 * 28 17 16 46 46 H 1.08993 * 109.58872 * 66.17341 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5476 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 6 1.0639 -4.8198 -0.0001 12 6 1.8288 -6.1447 0.0005 13 1 2.5209 -6.1657 -0.8413 14 6 0.8394 -7.3059 -0.1217 15 6 1.6059 -8.6302 -0.1543 16 6 2.3866 -8.7958 1.1533 17 7 3.2348 -7.6125 1.3509 18 6 4.5588 -7.7447 1.5653 19 8 5.2676 -6.7580 1.6181 20 6 5.1480 -9.0859 1.7361 21 6 4.5428 -10.1868 2.3027 22 8 5.4059 -11.2046 2.2687 23 6 6.5611 -10.8078 1.6963 24 6 7.7444 -11.6499 1.4846 25 7 7.7324 -12.9396 1.8755 26 8 8.7362 -11.1836 0.9560 27 6 6.4457 -9.4988 1.3436 28 6 2.6121 -6.2823 1.3099 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6848 -3.7145 0.8905 32 1 2.6847 -3.7146 -0.8895 33 1 0.4374 -4.7618 -0.8903 34 1 0.4369 -4.7622 0.8897 35 1 0.1633 -7.2985 0.7333 36 1 0.2635 -7.1969 -1.0408 37 1 0.9021 -9.4552 -0.2648 38 1 2.2995 -8.6285 -0.9950 39 1 1.6894 -8.8889 1.9859 40 1 3.0092 -9.6888 1.0965 41 1 3.5415 -10.2201 2.7062 42 1 6.9418 -13.3113 2.2972 43 1 8.5143 -13.4963 1.7352 44 1 7.1974 -8.8921 0.8608 45 1 3.3853 -5.5154 1.3554 46 1 1.9333 -6.1703 2.1552 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267888077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:54 Heat of formation + Delta-G solvation = -49.628048 kcal Electronic energy + Delta-G solvation = -28325.396786 eV Core-core repulsion = 24216.791018 eV Total energy + Delta-G solvation = -4108.605768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.37442 -40.30021 -39.65294 -37.84305 -35.42312 -34.45328 -33.84108 -33.25872 -32.23219 -30.96273 -30.30427 -27.52121 -26.22165 -24.55166 -24.02028 -23.21739 -22.56458 -21.35935 -20.82180 -20.25573 -19.73478 -18.54298 -17.49277 -17.27669 -17.01074 -16.96816 -16.34891 -16.07456 -15.39551 -14.96313 -14.79849 -14.75691 -14.66807 -14.19660 -13.81994 -13.73158 -13.62830 -13.39586 -13.29245 -13.04249 -12.96309 -12.72997 -12.20345 -11.50061 -11.17250 -11.14345 -11.04938 -11.00464 -10.82221 -10.60793 -10.54027 -10.44214 -10.36239 -10.23653 -10.12670 -9.89176 -9.60994 -9.24495 -8.80959 -8.79958 -6.85565 -5.71014 -2.99048 0.41873 1.22853 2.00302 2.53517 2.62243 2.93536 3.00939 3.48572 3.53547 3.55866 3.98914 4.09300 4.33535 4.41799 4.64136 4.65241 4.70236 4.83636 4.92340 5.01410 5.03931 5.13068 5.21037 5.36920 5.52654 5.57293 5.60412 5.63228 5.68104 5.77176 5.85779 5.96551 5.98843 6.01600 6.18561 6.19823 6.23246 6.33704 6.45314 6.48340 6.69609 6.92244 6.95202 7.16580 7.55497 7.77286 7.96146 8.48464 9.59412 10.17912 10.52603 11.52069 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018654 B = 0.002105 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.649809 B =13299.299679 C =14460.502036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.150 3.850 11 C -0.118 4.118 12 C -0.096 4.096 13 H 0.075 0.925 14 C -0.116 4.116 15 C -0.134 4.134 16 C 0.092 3.908 17 N -0.606 5.606 18 C 0.583 3.417 19 O -0.522 6.522 20 C -0.227 4.227 21 C 0.038 3.962 22 O -0.154 6.154 23 C -0.091 4.091 24 C 0.612 3.388 25 N -0.844 5.844 26 O -0.517 6.517 27 C -0.062 4.062 28 C 0.115 3.885 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.021 0.979 32 H 0.017 0.983 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.225 0.775 42 H 0.407 0.593 43 H 0.410 0.590 44 H 0.171 0.829 45 H 0.102 0.898 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.468 -33.457 5.254 34.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.022 3.978 11 C -0.156 4.156 12 C -0.116 4.116 13 H 0.093 0.907 14 C -0.153 4.153 15 C -0.172 4.172 16 C -0.030 4.030 17 N -0.339 5.339 18 C 0.371 3.629 19 O -0.398 6.398 20 C -0.231 4.231 21 C -0.034 4.034 22 O -0.048 6.048 23 C -0.142 4.142 24 C 0.396 3.604 25 N -0.407 5.407 26 O -0.393 6.393 27 C -0.083 4.083 28 C -0.006 4.006 29 H 0.064 0.936 30 H 0.216 0.784 31 H 0.039 0.961 32 H 0.035 0.965 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.241 0.759 42 H 0.236 0.764 43 H 0.242 0.758 44 H 0.189 0.811 45 H 0.120 0.880 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.526 -32.640 5.046 33.666 hybrid contribution -0.155 0.658 0.099 0.683 sum 6.371 -31.982 5.145 33.014 Atomic orbital electron populations 1.69657 1.05089 1.25539 1.58176 1.24736 0.95550 0.97689 1.03238 0.86182 0.78704 0.83806 0.77509 1.21760 1.21800 1.20717 1.19269 0.91102 0.84223 1.42159 0.91172 1.42368 1.05828 1.00116 1.89488 1.20719 0.93552 0.85567 0.97913 1.21726 0.98639 0.92896 1.02387 1.21465 0.97203 0.95167 0.97753 0.90685 1.21603 0.97697 0.93399 1.02629 1.21914 0.99416 0.98628 0.97271 1.22124 0.94134 0.88212 0.98568 1.47999 1.06684 1.08191 1.71006 1.17267 0.81631 0.87098 0.76937 1.90860 1.59844 1.38894 1.50175 1.20748 0.96532 0.95760 1.10079 1.25327 0.94907 0.84010 0.99188 1.83904 1.21423 1.37812 1.61676 1.21801 0.87531 0.95674 1.09214 1.16472 0.84406 0.81541 0.77964 1.43668 1.21219 1.11622 1.64204 1.90971 1.31942 1.73171 1.43259 1.21924 0.95956 0.93093 0.97346 1.21891 0.97855 0.83173 0.97666 0.93613 0.78381 0.96146 0.96491 0.91499 0.91758 0.91584 0.91307 0.90635 0.91351 0.90857 0.89610 0.75852 0.76390 0.75768 0.81124 0.87969 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.93 13.06 55.49 0.72 -28.20 16 2 C -0.02 -0.49 5.50 -17.44 -0.10 -0.59 16 3 Si 0.91 23.17 29.55 -169.99 -5.02 18.14 16 4 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 9 N -0.73 -19.28 5.60 -59.91 -0.34 -19.62 16 10 C 0.15 3.12 6.02 -4.04 -0.02 3.10 16 11 C -0.12 -1.85 4.80 -26.74 -0.13 -1.98 16 12 C -0.10 -1.19 2.34 -90.50 -0.21 -1.40 16 13 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.12 -1.07 5.17 -26.69 -0.14 -1.20 16 15 C -0.13 -0.95 6.08 -26.61 -0.16 -1.11 16 16 C 0.09 0.60 5.27 -3.71 -0.02 0.58 16 17 N -0.61 -6.49 2.97 -174.01 -0.52 -7.01 16 18 C 0.58 7.53 7.62 -12.49 -0.10 7.44 16 19 O -0.52 -9.19 16.48 5.28 0.09 -9.10 16 20 C -0.23 -2.23 5.51 -104.95 -0.58 -2.81 16 21 C 0.04 0.22 9.72 30.58 0.30 0.52 16 22 O -0.15 -0.95 10.33 6.19 0.06 -0.89 16 23 C -0.09 -0.77 7.09 -36.92 -0.26 -1.04 16 24 C 0.61 5.22 8.06 -12.81 -0.10 5.11 16 25 N -0.84 -3.37 8.87 30.28 0.27 -3.10 16 26 O -0.52 -6.46 17.68 5.21 0.09 -6.37 16 27 C -0.06 -0.65 10.54 -39.03 -0.41 -1.06 16 28 C 0.12 1.47 5.33 -3.71 -0.02 1.45 16 29 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.38 10.41 7.67 -40.82 -0.31 10.10 16 31 H 0.02 0.44 6.70 -51.93 -0.35 0.09 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.41 4.37 -51.93 -0.23 0.18 16 41 H 0.23 0.45 6.65 -52.49 -0.35 0.10 16 42 H 0.41 0.64 8.57 -40.82 -0.35 0.29 16 43 H 0.41 1.02 8.93 -40.82 -0.36 0.66 16 44 H 0.17 1.92 8.06 -52.49 -0.42 1.50 16 45 H 0.10 1.63 5.71 -51.93 -0.30 1.33 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 379.12 15.07 5.71 5.71 Total: -1.00 -37.99 379.12 -7.47 -45.46 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -6.44 Total: 5.01 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -2.10 Total: -0.03 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.14 Total: -57.93 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.24 Total: -16.36 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.99 -7.47 -45.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267888077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.169 kcal (2) G-P(sol) polarization free energy of solvation -37.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds