Wall clock time and date at job start Tue Mar 31 2020 18:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86799 * 120.00345 * 2 1 4 4 H 1.48503 * 109.47279 * 270.00374 * 3 2 1 5 5 H 1.48505 * 109.46806 * 29.99700 * 3 2 1 6 6 H 1.48490 * 109.47499 * 149.99918 * 3 2 1 7 7 C 1.38811 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00377 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00159 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00296 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47433 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47392 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.49629 * 304.93255 * 12 11 10 14 14 C 1.53039 * 109.49905 * 184.83412 * 12 11 10 15 15 C 1.53044 * 109.53964 * 178.67845 * 14 12 11 16 16 C 1.53191 * 109.30652 * 61.37037 * 15 14 12 17 17 N 1.46930 * 108.77617 * 305.35835 * 16 15 14 18 18 C 1.34779 * 120.63209 * 233.63437 * 17 16 15 19 19 O 1.21600 * 119.99580 * 173.97250 * 18 17 16 20 20 C 1.47487 * 120.00139 * 353.96646 * 18 17 16 21 21 C 1.37809 * 126.77183 * 327.79796 * 20 18 17 22 22 O 1.33497 * 108.33836 * 179.97438 * 21 20 18 23 23 C 1.34884 * 109.89162 * 359.97438 * 22 21 20 24 24 C 1.46778 * 125.65666 * 179.97438 * 23 22 21 25 25 N 1.34773 * 119.99723 * 0.02779 * 24 23 22 26 26 O 1.21674 * 119.99979 * 180.02562 * 24 23 22 27 27 C 1.36056 * 108.68694 * 359.76245 * 23 22 21 28 28 C 1.46929 * 118.73529 * 53.61778 * 17 16 15 29 29 H 0.97004 * 120.00550 * 0.02562 * 1 2 3 30 30 H 0.96992 * 119.99450 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.46886 * 59.99272 * 10 9 7 32 32 H 1.09002 * 109.47130 * 300.00010 * 10 9 7 33 33 H 1.09002 * 109.47358 * 59.99346 * 11 10 9 34 34 H 1.09002 * 109.46894 * 300.00061 * 11 10 9 35 35 H 1.09001 * 109.46459 * 298.70514 * 14 12 11 36 36 H 1.09009 * 109.45699 * 58.66213 * 14 12 11 37 37 H 1.09004 * 109.49752 * 181.31691 * 15 14 12 38 38 H 1.08997 * 109.50183 * 301.38663 * 15 14 12 39 39 H 1.08990 * 109.59237 * 65.15172 * 16 15 14 40 40 H 1.09006 * 109.58287 * 185.43753 * 16 15 14 41 41 H 1.08001 * 125.83419 * 359.92330 * 21 20 18 42 42 H 0.97003 * 120.00630 * 359.97438 * 25 24 23 43 43 H 0.97007 * 119.99971 * 179.97438 * 25 24 23 44 44 H 1.08000 * 126.68599 * 180.26562 * 27 23 22 45 45 H 1.08991 * 109.58465 * 186.60447 * 28 17 16 46 46 H 1.08993 * 109.58872 * 66.17341 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5476 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 6 1.0639 -4.8198 -0.0001 12 6 1.8288 -6.1447 0.0005 13 1 2.5209 -6.1657 -0.8413 14 6 0.8394 -7.3059 -0.1217 15 6 1.6059 -8.6302 -0.1543 16 6 2.3866 -8.7958 1.1533 17 7 3.2348 -7.6125 1.3509 18 6 4.5588 -7.7447 1.5653 19 8 5.2676 -6.7580 1.6181 20 6 5.1480 -9.0859 1.7361 21 6 4.5428 -10.1868 2.3027 22 8 5.4059 -11.2046 2.2687 23 6 6.5611 -10.8078 1.6963 24 6 7.7444 -11.6499 1.4846 25 7 7.7324 -12.9396 1.8755 26 8 8.7362 -11.1836 0.9560 27 6 6.4457 -9.4988 1.3436 28 6 2.6121 -6.2823 1.3099 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6848 -3.7145 0.8905 32 1 2.6847 -3.7146 -0.8895 33 1 0.4374 -4.7618 -0.8903 34 1 0.4369 -4.7622 0.8897 35 1 0.1633 -7.2985 0.7333 36 1 0.2635 -7.1969 -1.0408 37 1 0.9021 -9.4552 -0.2648 38 1 2.2995 -8.6285 -0.9950 39 1 1.6894 -8.8889 1.9859 40 1 3.0092 -9.6888 1.0965 41 1 3.5415 -10.2201 2.7062 42 1 6.9418 -13.3113 2.2972 43 1 8.5143 -13.4963 1.7352 44 1 7.1974 -8.8921 0.8608 45 1 3.3853 -5.5154 1.3554 46 1 1.9333 -6.1703 2.1552 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267888077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:53 Heat of formation + Delta-G solvation = -80.030866 kcal Electronic energy + Delta-G solvation = -28326.715151 eV Core-core repulsion = 24216.791018 eV Total energy + Delta-G solvation = -4109.924133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.00949 -41.20446 -40.34099 -38.88832 -36.99691 -35.30676 -34.89982 -34.17553 -33.39059 -32.36799 -31.25190 -28.98306 -27.07959 -25.96990 -24.93243 -24.05807 -23.91068 -22.24756 -21.95241 -21.20008 -20.46553 -19.30617 -19.07597 -18.07916 -17.94011 -17.60766 -17.23234 -16.90159 -16.71127 -16.28353 -15.80546 -15.57861 -15.46598 -15.41305 -15.29225 -15.05051 -14.70328 -14.38718 -14.34564 -14.20129 -13.91511 -13.71241 -13.40371 -12.98588 -12.85001 -12.58518 -12.31615 -12.15192 -11.95445 -11.90776 -11.77344 -11.73272 -11.56482 -11.34486 -11.20187 -11.06208 -10.94551 -10.88527 -9.89658 -9.67287 -9.03801 -7.99210 -5.28255 -0.18869 0.45584 1.38541 1.43925 1.45881 1.54920 1.71440 1.90558 2.10670 2.47057 2.52842 3.27235 3.33543 3.59145 3.62053 3.73129 3.85309 3.91447 4.04260 4.10237 4.20562 4.29427 4.34670 4.43067 4.49746 4.54350 4.65893 4.68728 4.72202 4.84337 4.84730 4.88862 4.92410 5.06344 5.16118 5.25442 5.32775 5.39094 5.41419 5.44953 5.50001 5.53644 5.72823 6.24008 6.25310 6.31978 7.03392 7.08004 7.29898 8.05002 8.30442 9.24010 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018654 B = 0.002105 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.649809 B =13299.299679 C =14460.502036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.974 3.026 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.745 5.745 10 C 0.149 3.851 11 C -0.103 4.103 12 C -0.086 4.086 13 H 0.055 0.945 14 C -0.111 4.111 15 C -0.130 4.130 16 C 0.084 3.916 17 N -0.599 5.599 18 C 0.578 3.422 19 O -0.589 6.589 20 C -0.259 4.259 21 C 0.087 3.913 22 O -0.133 6.133 23 C -0.085 4.085 24 C 0.610 3.390 25 N -0.815 5.815 26 O -0.567 6.567 27 C -0.090 4.090 28 C 0.117 3.883 29 H 0.253 0.747 30 H 0.376 0.624 31 H 0.014 0.986 32 H 0.005 0.995 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.052 0.948 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.276 0.724 42 H 0.423 0.577 43 H 0.421 0.579 44 H 0.146 0.854 45 H 0.059 0.941 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.698 -36.962 6.442 37.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.266 4.266 3 Si 0.802 3.198 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.384 4.384 8 H 0.085 0.915 9 N -0.388 5.388 10 C 0.022 3.978 11 C -0.142 4.142 12 C -0.106 4.106 13 H 0.074 0.926 14 C -0.149 4.149 15 C -0.168 4.168 16 C -0.036 4.036 17 N -0.330 5.330 18 C 0.368 3.632 19 O -0.470 6.470 20 C -0.263 4.263 21 C 0.014 3.986 22 O -0.026 6.026 23 C -0.137 4.137 24 C 0.394 3.606 25 N -0.379 5.379 26 O -0.448 6.448 27 C -0.111 4.111 28 C -0.005 4.005 29 H 0.062 0.938 30 H 0.208 0.792 31 H 0.032 0.968 32 H 0.023 0.977 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.130 0.870 38 H 0.071 0.929 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.291 0.709 42 H 0.255 0.745 43 H 0.254 0.746 44 H 0.163 0.837 45 H 0.077 0.923 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.727 -36.264 6.244 37.100 hybrid contribution 0.364 1.669 -0.261 1.728 sum 5.091 -34.595 5.983 35.476 Atomic orbital electron populations 1.69797 1.06400 1.26219 1.59184 1.25568 0.96542 1.01034 1.03417 0.85138 0.77630 0.79410 0.77578 1.21182 1.21483 1.19923 1.19603 0.91290 0.85714 1.41778 0.91485 1.42559 1.05674 1.01167 1.89408 1.20861 0.94466 0.85641 0.96799 1.21588 0.97516 0.92421 1.02646 1.21346 0.97392 0.95025 0.96846 0.92633 1.21586 0.97025 0.92802 1.03475 1.21920 0.99585 0.98337 0.96956 1.22569 0.94415 0.86913 0.99729 1.48069 1.06469 1.08755 1.69720 1.17752 0.81950 0.87587 0.75944 1.90820 1.61501 1.41238 1.53416 1.20473 0.96889 0.95562 1.13389 1.26099 0.95489 0.81848 0.95171 1.83955 1.20552 1.37378 1.60687 1.21568 0.88267 0.94788 1.09073 1.16529 0.83727 0.82600 0.77753 1.43474 1.22233 1.09961 1.62272 1.90951 1.33653 1.74359 1.45815 1.21857 0.96373 0.94217 0.98682 1.21684 0.96803 0.83687 0.98337 0.93788 0.79171 0.96794 0.97713 0.91504 0.91057 0.89933 0.91154 0.87027 0.92889 0.87197 0.87298 0.70901 0.74511 0.74579 0.83661 0.92267 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.51 13.06 21.65 0.28 -60.23 16 2 C -0.07 -4.39 5.50 84.86 0.47 -3.92 16 3 Si 0.97 48.24 29.55 68.60 2.03 50.27 16 4 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 6 H -0.27 -13.11 7.11 99.48 0.71 -12.41 16 7 C -0.25 -15.08 9.99 84.03 0.84 -14.24 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 9 N -0.75 -40.37 5.60 -343.44 -1.92 -42.29 16 10 C 0.15 6.47 6.02 86.38 0.52 6.99 16 11 C -0.10 -3.26 4.80 30.59 0.15 -3.12 16 12 C -0.09 -2.11 2.34 -10.72 -0.03 -2.14 16 13 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 14 C -0.11 -1.73 5.17 30.62 0.16 -1.57 16 15 C -0.13 -1.32 6.08 30.67 0.19 -1.13 16 16 C 0.08 0.72 5.27 86.36 0.45 1.18 16 17 N -0.60 -12.12 2.97 -822.71 -2.45 -14.56 16 18 C 0.58 15.28 7.62 86.68 0.66 15.94 16 19 O -0.59 -22.65 16.48 -4.03 -0.07 -22.72 16 20 C -0.26 -4.85 5.51 -20.08 -0.11 -4.96 16 21 C 0.09 0.65 9.72 67.72 0.66 1.31 16 22 O -0.13 -1.13 10.33 -0.77 -0.01 -1.14 16 23 C -0.09 -1.35 7.09 24.00 0.17 -1.18 16 24 C 0.61 9.97 8.06 86.48 0.70 10.67 16 25 N -0.82 -4.68 8.87 -176.33 -1.56 -6.25 16 26 O -0.57 -14.73 17.68 -4.26 -0.08 -14.81 16 27 C -0.09 -1.96 10.54 22.62 0.24 -1.72 16 28 C 0.12 3.01 5.33 86.36 0.46 3.47 16 29 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 30 H 0.38 21.02 7.67 -92.71 -0.71 20.31 16 31 H 0.01 0.64 6.70 -2.39 -0.02 0.62 16 32 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.11 0.43 4.37 -2.38 -0.01 0.42 16 41 H 0.28 -0.85 6.65 -2.91 -0.02 -0.87 16 42 H 0.42 -0.13 8.57 -92.71 -0.79 -0.92 16 43 H 0.42 1.22 8.93 -92.70 -0.83 0.40 16 44 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 45 H 0.06 2.05 5.71 -2.39 -0.01 2.03 16 46 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -89.82 379.12 0.47 -89.36 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -1.28 Total: 16.80 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 5.52 Total: 5.57 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -5.65 Total: -123.33 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -0.15 Total: -38.67 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -89.82 0.47 -89.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267888077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.327 kcal (2) G-P(sol) polarization free energy of solvation -89.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds