Wall clock time and date at job start Tue Mar 31 2020 18:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99842 * 2 1 4 4 H 1.48505 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47539 * 299.99943 * 3 2 1 6 6 H 1.48504 * 109.47123 * 60.00436 * 3 2 1 7 7 C 1.38813 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99311 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00391 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00284 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47221 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47463 * 304.99769 * 11 10 9 13 13 O 1.42906 * 109.47153 * 65.00254 * 11 10 9 14 14 C 1.53008 * 109.47491 * 184.99466 * 11 10 9 15 15 N 1.46492 * 109.47594 * 179.97438 * 14 11 10 16 16 C 1.34774 * 120.00414 * 180.02562 * 15 14 11 17 17 O 1.21596 * 119.99764 * 359.97438 * 16 15 14 18 18 C 1.47521 * 120.00359 * 180.02562 * 16 15 14 19 19 C 1.39746 * 120.76913 * 359.97438 * 18 16 15 20 20 C 1.38881 * 118.87139 * 180.25802 * 19 18 16 21 21 C 1.37854 * 119.43944 * 359.23695 * 20 19 18 22 22 N 1.32757 * 120.41598 * 0.86226 * 21 20 19 23 23 C 1.31848 * 122.58534 * 359.54672 * 22 21 20 24 24 O 1.35426 * 119.89209 * 179.97438 * 23 22 21 25 25 C 1.50792 * 122.25903 * 180.81370 * 21 20 19 26 26 C 1.52700 * 110.60352 * 342.17679 * 25 21 20 27 27 C 1.53311 * 108.44339 * 51.37996 * 26 25 21 28 28 C 1.50551 * 117.76722 * 179.61968 * 20 19 18 29 29 H 0.97003 * 119.99952 * 359.97438 * 1 2 3 30 30 H 0.97008 * 119.99539 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47483 * 59.99511 * 10 9 7 32 32 H 1.09002 * 109.47173 * 300.00075 * 10 9 7 33 33 H 0.96698 * 114.00201 * 59.99523 * 13 11 10 34 34 H 1.09004 * 109.46133 * 60.00003 * 14 11 10 35 35 H 1.08999 * 109.47013 * 300.00578 * 14 11 10 36 36 H 0.97005 * 119.99645 * 0.02562 * 15 14 11 37 37 H 1.08002 * 120.56059 * 359.97438 * 19 18 16 38 38 H 0.96704 * 113.99881 * 270.01972 * 24 23 22 39 39 H 1.09000 * 109.25104 * 102.45895 * 25 21 20 40 40 H 1.08996 * 109.25188 * 221.92286 * 25 21 20 41 41 H 1.08999 * 109.64180 * 171.07382 * 26 25 21 42 42 H 1.09004 * 109.63549 * 291.69571 * 26 25 21 43 43 H 1.09006 * 109.68779 * 49.80594 * 27 26 25 44 44 H 1.09004 * 109.69239 * 170.37804 * 27 26 25 45 45 H 1.09002 * 109.39131 * 41.88605 * 28 20 19 46 46 H 1.09005 * 109.05224 * 282.48824 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0639 -4.8196 0.0001 12 1 0.3801 -4.7127 0.8422 13 8 0.3211 -4.8120 -1.2207 14 6 1.8248 -6.1412 0.1257 15 7 0.8728 -7.2546 0.1269 16 6 1.3187 -8.5224 0.2293 17 8 2.5112 -8.7420 0.3201 18 6 0.3600 -9.6437 0.2300 19 6 -1.0138 -9.4098 0.1258 20 6 -1.8813 -10.4943 0.1359 21 6 -1.3693 -11.7706 0.2319 22 7 -0.0596 -11.9637 0.3313 23 6 0.8065 -10.9696 0.3348 24 8 2.1315 -11.2292 0.4394 25 6 -2.2512 -12.9938 0.2304 26 6 -3.6950 -12.6156 0.5530 27 6 -4.1169 -11.4733 -0.3783 28 6 -3.3566 -10.2133 0.0312 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 2.6848 -3.7145 0.8894 32 1 2.6848 -3.7145 -0.8905 33 1 0.8668 -4.9035 -2.0137 34 1 2.3914 -6.1469 1.0569 35 1 2.5086 -6.2481 -0.7164 36 1 -0.0785 -7.0794 0.0541 37 1 -1.3946 -8.4025 0.0436 38 1 2.4564 -11.2559 1.3499 39 1 -2.2137 -13.4626 -0.7529 40 1 -1.8891 -13.6988 0.9787 41 1 -4.3437 -13.4770 0.3936 42 1 -3.7647 -12.2876 1.5902 43 1 -3.8729 -11.7307 -1.4091 44 1 -5.1893 -11.3013 -0.2862 45 1 -3.5247 -9.4343 -0.7125 46 1 -3.7232 -9.8709 0.9989 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268326650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:31 Heat of formation + Delta-G solvation = -93.155020 kcal Electronic energy + Delta-G solvation = -28157.435110 eV Core-core repulsion = 24046.941871 eV Total energy + Delta-G solvation = -4110.493239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.40358 -39.59754 -38.24015 -37.50897 -35.99339 -34.53684 -34.10436 -33.69854 -31.41349 -30.77981 -29.95790 -28.95083 -25.76271 -24.80646 -23.89694 -23.10658 -22.56167 -21.51211 -21.19944 -20.04887 -18.82083 -17.92209 -17.41720 -17.16404 -16.39085 -16.22205 -15.94098 -15.53924 -15.22141 -14.71732 -14.63125 -14.51301 -14.39000 -14.29561 -13.90590 -13.73807 -13.52147 -13.26976 -13.02096 -12.98676 -12.73068 -12.38422 -12.03135 -11.95158 -11.88124 -11.42665 -11.25722 -11.24303 -10.99638 -10.86023 -10.68633 -10.33274 -10.17497 -10.12305 -9.87747 -9.74521 -9.49469 -9.22574 -8.96528 -8.93474 -6.97626 -5.79749 -3.09451 0.23434 0.70306 2.59043 2.90562 3.16134 3.41219 3.44095 3.46987 3.49163 4.00882 4.06778 4.28214 4.34175 4.40187 4.50290 4.56226 4.60637 4.68613 4.83016 4.92543 5.00986 5.06286 5.16240 5.17753 5.19001 5.33560 5.41405 5.47491 5.52356 5.55088 5.57323 5.61733 5.73046 5.80585 5.83032 5.90119 6.05839 6.14376 6.29647 6.47095 6.62571 7.23064 7.34637 7.52634 7.66076 7.86881 8.06107 8.38341 9.50191 10.06191 10.41806 11.42669 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.002060 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.218248 B =13589.463325 C =14876.835541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.089 3.911 12 H 0.105 0.895 13 O -0.554 6.554 14 C 0.090 3.910 15 N -0.716 5.716 16 C 0.561 3.439 17 O -0.522 6.522 18 C -0.205 4.205 19 C -0.028 4.028 20 C -0.145 4.145 21 C 0.182 3.818 22 N -0.514 5.514 23 C 0.373 3.627 24 O -0.460 6.460 25 C -0.073 4.073 26 C -0.120 4.120 27 C -0.123 4.123 28 C -0.077 4.077 29 H 0.255 0.745 30 H 0.388 0.612 31 H 0.029 0.971 32 H 0.024 0.976 33 H 0.374 0.626 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.402 0.598 37 H 0.145 0.855 38 H 0.405 0.595 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.582 -27.922 1.546 29.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.371 5.371 10 C -0.001 4.001 11 C 0.029 3.971 12 H 0.123 0.877 13 O -0.359 6.359 14 C -0.034 4.034 15 N -0.369 5.369 16 C 0.346 3.654 17 O -0.399 6.399 18 C -0.211 4.211 19 C -0.054 4.054 20 C -0.147 4.147 21 C 0.046 3.954 22 N -0.233 5.233 23 C 0.191 3.809 24 O -0.267 6.267 25 C -0.110 4.110 26 C -0.158 4.158 27 C -0.160 4.160 28 C -0.114 4.114 29 H 0.065 0.935 30 H 0.223 0.777 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.221 0.779 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.238 0.762 37 H 0.162 0.838 38 H 0.264 0.736 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.689 -28.703 1.498 29.753 hybrid contribution 0.166 1.920 0.014 1.927 sum -7.523 -26.783 1.513 27.861 Atomic orbital electron populations 1.69686 1.05115 1.25594 1.57432 1.24769 0.95554 0.97770 1.02830 0.86102 0.78777 0.83986 0.77212 1.20528 1.21804 1.21819 1.19266 0.91056 0.84069 1.43047 0.91118 1.42239 1.06058 0.99408 1.89368 1.21195 0.93483 0.86524 0.98947 1.22412 0.94616 0.91821 0.88268 0.87706 1.86564 1.37591 1.96238 1.15458 1.22138 0.92152 0.85658 1.03427 1.45806 1.11213 1.05365 1.74509 1.17799 0.87865 0.82383 0.77319 1.90824 1.15755 1.84445 1.48867 1.21106 0.94510 0.94725 1.10807 1.21806 0.91252 0.99958 0.92399 1.20427 0.97492 0.92874 1.03933 1.21048 0.88792 0.93982 0.91600 1.67119 1.03277 1.36596 1.16278 1.18976 0.84814 0.85957 0.91202 1.84731 1.16170 1.92996 1.32815 1.20485 0.93008 0.93706 1.03833 1.21596 0.94917 0.99038 1.00269 1.21592 1.00122 0.94441 0.99870 1.20446 0.89209 0.98935 1.02858 0.93511 0.77743 0.95312 0.95832 0.77879 0.90197 0.90812 0.76166 0.83759 0.73582 0.89282 0.89274 0.90544 0.91211 0.91295 0.90732 0.89951 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.11 5.55 -59.92 -0.33 -18.45 16 10 C 0.13 2.41 5.90 -4.05 -0.02 2.39 16 11 C 0.09 1.31 3.09 -26.73 -0.08 1.23 16 12 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 13 O -0.55 -8.35 13.03 -35.23 -0.46 -8.81 16 14 C 0.09 1.16 5.34 -4.04 -0.02 1.14 16 15 N -0.72 -8.32 5.40 -61.35 -0.33 -8.65 16 16 C 0.56 7.42 7.77 -12.48 -0.10 7.32 16 17 O -0.52 -8.54 15.22 -16.36 -0.25 -8.79 16 18 C -0.20 -2.35 5.90 -104.78 -0.62 -2.97 16 19 C -0.03 -0.25 9.21 -38.78 -0.36 -0.61 16 20 C -0.15 -1.17 5.74 -104.60 -0.60 -1.77 16 21 C 0.18 1.65 6.63 -82.29 -0.55 1.11 16 22 N -0.51 -5.93 10.18 -9.20 -0.09 -6.02 16 23 C 0.37 4.58 7.78 -16.77 -0.13 4.45 16 24 O -0.46 -5.70 11.69 -39.61 -0.46 -6.16 16 25 C -0.07 -0.45 5.91 -27.99 -0.17 -0.61 16 26 C -0.12 -0.52 5.97 -26.72 -0.16 -0.67 16 27 C -0.12 -0.54 5.99 -26.70 -0.16 -0.70 16 28 C -0.08 -0.42 5.67 -28.09 -0.16 -0.58 16 29 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.39 10.34 7.67 -40.82 -0.31 10.03 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.37 4.72 9.05 45.56 0.41 5.14 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.40 3.97 6.46 -40.82 -0.26 3.71 16 37 H 0.14 0.97 6.51 -52.49 -0.34 0.63 16 38 H 0.40 3.31 9.06 45.56 0.41 3.72 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 43 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 44 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 45 H 0.08 0.40 8.13 -51.93 -0.42 -0.02 16 46 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 382.00 15.07 5.76 5.76 Total: -1.00 -35.92 382.00 -8.97 -44.89 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -5.13 Total: 14.00 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -3.37 Total: 2.31 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -0.03 Total: -60.52 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -1.17 Total: -23.76 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.92 -8.97 -44.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268326650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.267 kcal (2) G-P(sol) polarization free energy of solvation -35.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds