Wall clock time and date at job start Tue Mar 31 2020 18:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99842 * 2 1 4 4 H 1.48505 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47539 * 299.99943 * 3 2 1 6 6 H 1.48504 * 109.47123 * 60.00436 * 3 2 1 7 7 C 1.38813 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99311 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00391 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00284 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47221 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47463 * 304.99769 * 11 10 9 13 13 O 1.42906 * 109.47153 * 65.00254 * 11 10 9 14 14 C 1.53008 * 109.47491 * 184.99466 * 11 10 9 15 15 N 1.46492 * 109.47594 * 179.97438 * 14 11 10 16 16 C 1.34774 * 120.00414 * 180.02562 * 15 14 11 17 17 O 1.21596 * 119.99764 * 359.97438 * 16 15 14 18 18 C 1.47521 * 120.00359 * 180.02562 * 16 15 14 19 19 C 1.39746 * 120.76913 * 359.97438 * 18 16 15 20 20 C 1.38881 * 118.87139 * 180.25802 * 19 18 16 21 21 C 1.37854 * 119.43944 * 359.23695 * 20 19 18 22 22 N 1.32757 * 120.41598 * 0.86226 * 21 20 19 23 23 C 1.31848 * 122.58534 * 359.54672 * 22 21 20 24 24 O 1.35426 * 119.89209 * 179.97438 * 23 22 21 25 25 C 1.50792 * 122.25903 * 180.81370 * 21 20 19 26 26 C 1.52700 * 110.60352 * 342.17679 * 25 21 20 27 27 C 1.53311 * 108.44339 * 51.37996 * 26 25 21 28 28 C 1.50551 * 117.76722 * 179.61968 * 20 19 18 29 29 H 0.97003 * 119.99952 * 359.97438 * 1 2 3 30 30 H 0.97008 * 119.99539 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47483 * 59.99511 * 10 9 7 32 32 H 1.09002 * 109.47173 * 300.00075 * 10 9 7 33 33 H 0.96698 * 114.00201 * 59.99523 * 13 11 10 34 34 H 1.09004 * 109.46133 * 60.00003 * 14 11 10 35 35 H 1.08999 * 109.47013 * 300.00578 * 14 11 10 36 36 H 0.97005 * 119.99645 * 0.02562 * 15 14 11 37 37 H 1.08002 * 120.56059 * 359.97438 * 19 18 16 38 38 H 0.96704 * 113.99881 * 270.01972 * 24 23 22 39 39 H 1.09000 * 109.25104 * 102.45895 * 25 21 20 40 40 H 1.08996 * 109.25188 * 221.92286 * 25 21 20 41 41 H 1.08999 * 109.64180 * 171.07382 * 26 25 21 42 42 H 1.09004 * 109.63549 * 291.69571 * 26 25 21 43 43 H 1.09006 * 109.68779 * 49.80594 * 27 26 25 44 44 H 1.09004 * 109.69239 * 170.37804 * 27 26 25 45 45 H 1.09002 * 109.39131 * 41.88605 * 28 20 19 46 46 H 1.09005 * 109.05224 * 282.48824 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0639 -4.8196 0.0001 12 1 0.3801 -4.7127 0.8422 13 8 0.3211 -4.8120 -1.2207 14 6 1.8248 -6.1412 0.1257 15 7 0.8728 -7.2546 0.1269 16 6 1.3187 -8.5224 0.2293 17 8 2.5112 -8.7420 0.3201 18 6 0.3600 -9.6437 0.2300 19 6 -1.0138 -9.4098 0.1258 20 6 -1.8813 -10.4943 0.1359 21 6 -1.3693 -11.7706 0.2319 22 7 -0.0596 -11.9637 0.3313 23 6 0.8065 -10.9696 0.3348 24 8 2.1315 -11.2292 0.4394 25 6 -2.2512 -12.9938 0.2304 26 6 -3.6950 -12.6156 0.5530 27 6 -4.1169 -11.4733 -0.3783 28 6 -3.3566 -10.2133 0.0312 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 2.6848 -3.7145 0.8894 32 1 2.6848 -3.7145 -0.8905 33 1 0.8668 -4.9035 -2.0137 34 1 2.3914 -6.1469 1.0569 35 1 2.5086 -6.2481 -0.7164 36 1 -0.0785 -7.0794 0.0541 37 1 -1.3946 -8.4025 0.0436 38 1 2.4564 -11.2559 1.3499 39 1 -2.2137 -13.4626 -0.7529 40 1 -1.8891 -13.6988 0.9787 41 1 -4.3437 -13.4770 0.3936 42 1 -3.7647 -12.2876 1.5902 43 1 -3.8729 -11.7307 -1.4091 44 1 -5.1893 -11.3013 -0.2862 45 1 -3.5247 -9.4343 -0.7125 46 1 -3.7232 -9.8709 0.9989 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268326650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:30 Heat of formation + Delta-G solvation = -123.505954 kcal Electronic energy + Delta-G solvation = -28158.751225 eV Core-core repulsion = 24046.941871 eV Total energy + Delta-G solvation = -4111.809354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.17660 -40.56447 -39.14265 -38.64413 -36.62306 -36.09711 -35.42560 -34.47036 -33.20396 -31.62038 -30.55501 -30.27331 -27.22538 -25.64517 -24.84032 -24.16232 -23.58396 -22.77850 -22.06829 -20.79008 -19.67900 -19.24812 -18.76057 -18.16179 -17.47290 -17.28297 -17.00791 -16.45724 -16.42210 -15.93588 -15.76966 -15.47061 -15.26631 -15.18333 -14.83200 -14.77255 -14.52812 -14.23806 -14.15459 -13.87563 -13.84655 -13.55220 -13.27515 -12.96706 -12.80349 -12.79087 -12.52736 -12.12791 -11.98056 -11.83120 -11.81131 -11.74721 -11.64578 -11.27236 -11.02778 -10.95841 -10.86765 -10.45431 -10.23420 -9.69036 -9.01707 -7.95898 -5.25098 -0.55758 -0.02521 1.47786 1.48159 1.58329 1.68505 1.92046 2.38176 2.55234 2.64029 3.30004 3.36073 3.45804 3.49284 3.55193 3.61856 3.75081 3.93983 4.00991 4.05984 4.09232 4.20034 4.36258 4.38732 4.45359 4.59574 4.60196 4.63466 4.66651 4.73875 4.82374 4.93518 4.98241 5.05317 5.17650 5.19525 5.25846 5.25906 5.29425 5.47877 5.48300 5.50074 6.25694 6.36521 6.50992 6.76776 6.77191 7.07203 7.32935 8.07839 8.31025 9.27446 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.002060 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.218248 B =13589.463325 C =14876.835541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.076 4.076 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.247 4.247 8 H 0.076 0.924 9 N -0.739 5.739 10 C 0.122 3.878 11 C 0.109 3.891 12 H 0.104 0.896 13 O -0.562 6.562 14 C 0.103 3.897 15 N -0.705 5.705 16 C 0.562 3.438 17 O -0.560 6.560 18 C -0.221 4.221 19 C -0.023 4.023 20 C -0.141 4.141 21 C 0.174 3.826 22 N -0.534 5.534 23 C 0.354 3.646 24 O -0.479 6.479 25 C -0.073 4.073 26 C -0.115 4.115 27 C -0.122 4.122 28 C -0.078 4.078 29 H 0.251 0.749 30 H 0.377 0.623 31 H 0.034 0.966 32 H 0.031 0.969 33 H 0.385 0.615 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.413 0.587 37 H 0.167 0.833 38 H 0.416 0.584 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.786 -28.495 1.449 30.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.379 4.379 8 H 0.094 0.906 9 N -0.382 5.382 10 C -0.005 4.005 11 C 0.049 3.951 12 H 0.122 0.878 13 O -0.369 6.369 14 C -0.022 4.022 15 N -0.358 5.358 16 C 0.349 3.651 17 O -0.439 6.439 18 C -0.227 4.227 19 C -0.049 4.049 20 C -0.142 4.142 21 C 0.038 3.962 22 N -0.254 5.254 23 C 0.172 3.828 24 O -0.288 6.288 25 C -0.111 4.111 26 C -0.153 4.153 27 C -0.160 4.160 28 C -0.115 4.115 29 H 0.060 0.940 30 H 0.209 0.791 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.234 0.766 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.251 0.749 37 H 0.185 0.815 38 H 0.277 0.723 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.880 -29.305 1.400 30.653 hybrid contribution 0.517 1.981 0.035 2.048 sum -8.363 -27.324 1.435 28.611 Atomic orbital electron populations 1.69832 1.06584 1.26033 1.59301 1.25588 0.96433 1.01155 1.03641 0.85069 0.78203 0.79759 0.76675 1.19086 1.22032 1.21985 1.19671 0.91523 0.85341 1.41359 0.90603 1.42413 1.05757 1.00727 1.89351 1.21405 0.94243 0.85715 0.99179 1.22095 0.93551 0.91107 0.88331 0.87849 1.86545 1.38131 1.96195 1.15997 1.21899 0.91933 0.84906 1.03469 1.45646 1.11574 1.04645 1.73891 1.18040 0.87652 0.82925 0.76473 1.90799 1.17360 1.84985 1.50783 1.20982 0.95297 0.93711 1.12757 1.22082 0.90172 1.01388 0.91269 1.20774 0.99015 0.92156 1.02302 1.21662 0.88327 0.95646 0.90526 1.67154 1.04363 1.36693 1.17211 1.19159 0.84813 0.86593 0.92227 1.84677 1.16859 1.93125 1.34158 1.20607 0.93773 0.92530 1.04145 1.21601 0.93606 0.99798 1.00304 1.21617 1.00933 0.93782 0.99618 1.20566 0.87168 0.99889 1.03877 0.93969 0.79062 0.94778 0.95154 0.76575 0.90229 0.90804 0.74944 0.81529 0.72277 0.88778 0.89265 0.88798 0.91087 0.91583 0.89060 0.88986 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.91 13.06 21.65 0.28 -58.62 16 2 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 3 Si 0.97 45.86 29.55 68.60 2.03 47.88 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 7 C -0.25 -13.66 9.99 84.04 0.84 -12.82 16 8 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -36.63 5.55 -343.48 -1.91 -38.53 16 10 C 0.12 4.50 5.90 86.38 0.51 5.01 16 11 C 0.11 3.08 3.09 30.60 0.09 3.18 16 12 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 13 O -0.56 -16.12 13.03 -148.98 -1.94 -18.06 16 14 C 0.10 2.50 5.34 86.38 0.46 2.96 16 15 N -0.70 -15.53 5.40 -466.28 -2.52 -18.05 16 16 C 0.56 14.71 7.77 86.69 0.67 15.39 16 17 O -0.56 -18.55 15.22 16.67 0.25 -18.30 16 18 C -0.22 -5.01 5.90 -19.96 -0.12 -5.13 16 19 C -0.02 -0.38 9.21 22.79 0.21 -0.17 16 20 C -0.14 -2.02 5.74 -19.85 -0.11 -2.14 16 21 C 0.17 2.99 6.63 42.36 0.28 3.27 16 22 N -0.53 -12.38 10.18 -296.24 -3.02 -15.39 16 23 C 0.35 8.87 7.78 85.19 0.66 9.54 16 24 O -0.48 -12.44 11.69 -66.53 -0.78 -13.22 16 25 C -0.07 -0.79 5.91 29.78 0.18 -0.61 16 26 C -0.12 -0.68 5.97 30.60 0.18 -0.50 16 27 C -0.12 -0.71 5.99 30.61 0.18 -0.52 16 28 C -0.08 -0.62 5.67 29.72 0.17 -0.45 16 29 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 30 H 0.38 20.14 7.67 -92.70 -0.71 19.43 16 31 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.39 9.11 9.05 -74.06 -0.67 8.44 16 34 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.41 7.37 6.46 -92.70 -0.60 6.77 16 37 H 0.17 1.82 6.51 -2.91 -0.02 1.80 16 38 H 0.42 7.44 9.06 -74.05 -0.67 6.77 16 39 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.07 0.43 8.10 -2.38 -0.02 0.41 16 43 H 0.07 0.44 8.10 -2.38 -0.02 0.42 16 44 H 0.09 0.27 8.14 -2.39 -0.02 0.26 16 45 H 0.09 0.60 8.13 -2.39 -0.02 0.58 16 46 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 Total: -1.00 -77.16 382.00 -4.51 -81.68 By element: Atomic # 1 Polarization: 39.06 SS G_CDS: -1.59 Total: 37.47 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 4.68 Total: 13.13 kcal Atomic # 7 Polarization: -123.43 SS G_CDS: -7.16 Total: -130.59 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -2.47 Total: -49.57 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -77.16 -4.51 -81.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268326650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.828 kcal (2) G-P(sol) polarization free energy of solvation -77.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds