Wall clock time and date at job start Tue Mar 31 2020 18:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00622 * 2 1 4 4 H 1.48503 * 109.47086 * 270.00399 * 3 2 1 5 5 H 1.48503 * 109.46612 * 30.00338 * 3 2 1 6 6 H 1.48497 * 109.46986 * 150.00041 * 3 2 1 7 7 C 1.38819 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99625 * 359.97438 * 7 2 1 9 9 N 1.36937 * 120.00106 * 179.97438 * 7 2 1 10 10 C 1.46494 * 120.00022 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47283 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47269 * 305.00317 * 11 10 9 13 13 O 1.42903 * 109.46459 * 65.00211 * 11 10 9 14 14 C 1.53001 * 109.47376 * 185.00021 * 11 10 9 15 15 N 1.46497 * 109.46900 * 180.02562 * 14 11 10 16 16 C 1.34783 * 119.99638 * 180.02562 * 15 14 11 17 17 O 1.21510 * 119.99985 * 359.97438 * 16 15 14 18 18 C 1.48164 * 119.99522 * 179.97438 * 16 15 14 19 19 C 1.39385 * 120.66610 * 359.72218 * 18 16 15 20 20 C 1.38871 * 118.61032 * 179.76700 * 19 18 16 21 21 O 1.35687 * 119.69640 * 180.34644 * 20 19 18 22 22 N 1.31837 * 120.60810 * 0.63108 * 20 19 18 23 23 C 1.32743 * 122.68591 * 359.73997 * 22 20 19 24 24 C 1.37451 * 120.23900 * 359.75955 * 23 22 20 25 25 C 1.50495 * 122.88278 * 180.73373 * 24 23 22 26 26 C 1.52766 * 110.58192 * 342.37808 * 25 24 23 27 27 C 1.53327 * 108.34712 * 50.79218 * 26 25 24 28 28 C 1.50754 * 117.45294 * 179.63424 * 23 22 20 29 29 H 0.97005 * 119.99686 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99589 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.47040 * 60.00172 * 10 9 7 32 32 H 1.08999 * 109.47079 * 299.99874 * 10 9 7 33 33 H 0.96700 * 114.00311 * 60.00313 * 13 11 10 34 34 H 1.08999 * 109.47164 * 300.00361 * 14 11 10 35 35 H 1.08997 * 109.47124 * 60.00063 * 14 11 10 36 36 H 0.96996 * 120.00310 * 359.97438 * 15 14 11 37 37 H 1.07995 * 120.69698 * 0.02562 * 19 18 16 38 38 H 0.96699 * 114.00054 * 270.28638 * 21 20 19 39 39 H 1.08994 * 109.25676 * 102.66302 * 25 24 23 40 40 H 1.09003 * 109.25194 * 222.09871 * 25 24 23 41 41 H 1.08997 * 109.68530 * 291.08077 * 26 25 24 42 42 H 1.08998 * 109.69085 * 170.50644 * 26 25 24 43 43 H 1.09000 * 109.67144 * 170.47739 * 27 26 25 44 44 H 1.08996 * 109.67618 * 49.94858 * 27 26 25 45 45 H 1.08997 * 109.25703 * 282.31426 * 28 23 22 46 46 H 1.08998 * 109.25427 * 41.78127 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4399 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3796 -1.2024 -0.0011 10 6 4.1119 -2.4711 -0.0011 11 6 5.6162 -2.1916 -0.0024 12 1 5.8652 -1.5461 -0.8446 13 8 5.9814 -1.5443 1.2182 14 6 6.3801 -3.5114 -0.1281 15 7 7.8204 -3.2438 -0.1287 16 6 8.6953 -4.2639 -0.2311 17 8 8.2893 -5.4056 -0.3224 18 6 10.1520 -3.9932 -0.2322 19 6 10.6326 -2.6885 -0.1340 20 6 12.0062 -2.4841 -0.1343 21 8 12.4983 -1.2237 -0.0326 22 7 12.8365 -3.5030 -0.2381 23 6 12.4203 -4.7592 -0.3412 24 6 11.0759 -5.0455 -0.3382 25 6 10.5389 -6.4480 -0.4356 26 6 11.6124 -7.3987 -0.9626 27 6 12.8836 -7.2012 -0.1284 28 6 13.4723 -5.8322 -0.4622 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3623 -0.0014 31 1 3.8482 -3.0428 -0.8909 32 1 3.8489 -3.0424 0.8892 33 1 5.7881 -2.0626 2.0114 34 1 6.1311 -4.1569 0.7142 35 1 6.1015 -4.0051 -1.0590 36 1 8.1444 -2.3324 -0.0562 37 1 9.9512 -1.8544 -0.0551 38 1 12.6254 -0.7813 -0.8830 39 1 10.2186 -6.7797 0.5520 40 1 9.6848 -6.4597 -1.1127 41 1 11.8208 -7.1736 -2.0085 42 1 11.2685 -8.4288 -0.8696 43 1 13.6063 -7.9804 -0.3708 44 1 12.6371 -7.2459 0.9324 45 1 13.8569 -5.8453 -1.4820 46 1 14.2883 -5.6148 0.2269 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268337063.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:38 Heat of formation + Delta-G solvation = -83.224942 kcal Electronic energy + Delta-G solvation = -28408.910510 eV Core-core repulsion = 24298.847872 eV Total energy + Delta-G solvation = -4110.062638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.56264 -39.75554 -38.38614 -37.81682 -36.06606 -34.72306 -34.24742 -33.72667 -31.56914 -30.55707 -30.04432 -29.35952 -26.25906 -24.79363 -23.76769 -23.51852 -22.20139 -21.67146 -21.06029 -20.07854 -19.07899 -17.81299 -17.74318 -17.42801 -16.33939 -16.25805 -16.08005 -15.88152 -15.29144 -15.13926 -14.77850 -14.67819 -14.55728 -14.17583 -13.94930 -13.81210 -13.49040 -13.34734 -13.17643 -12.81391 -12.70396 -12.44782 -12.23427 -12.09705 -12.04094 -11.38336 -11.28503 -11.27469 -11.05217 -10.92259 -10.89042 -10.47486 -10.21794 -10.19646 -9.91763 -9.64166 -9.53283 -9.36566 -9.00428 -8.97397 -7.31087 -5.81827 -3.18544 0.23910 0.52182 2.46014 2.71314 3.04301 3.30593 3.35921 3.41437 3.43669 3.92826 4.12569 4.30315 4.38890 4.45058 4.51796 4.53987 4.56000 4.60264 4.69848 4.94306 5.01196 5.04406 5.10461 5.17257 5.29009 5.35680 5.36875 5.46302 5.51119 5.54061 5.59020 5.65728 5.68109 5.76808 5.77292 5.93617 5.95585 6.05943 6.21564 6.34642 6.46959 7.03313 7.14343 7.44895 7.68013 7.83129 7.93143 8.36430 9.15476 9.87394 10.06526 11.36071 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020326 B = 0.002236 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.223672 B =12517.097866 C =13726.955395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.250 4.250 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.132 3.868 11 C 0.084 3.916 12 H 0.105 0.895 13 O -0.556 6.556 14 C 0.090 3.910 15 N -0.712 5.712 16 C 0.556 3.444 17 O -0.522 6.522 18 C -0.077 4.077 19 C -0.155 4.155 20 C 0.309 3.691 21 O -0.479 6.479 22 N -0.492 5.492 23 C 0.153 3.847 24 C -0.076 4.076 25 C -0.083 4.083 26 C -0.125 4.125 27 C -0.122 4.122 28 C -0.067 4.067 29 H 0.260 0.740 30 H 0.366 0.634 31 H 0.038 0.962 32 H 0.032 0.968 33 H 0.377 0.623 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.405 0.595 37 H 0.147 0.853 38 H 0.402 0.598 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.087 0.913 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.732 -12.012 -2.200 32.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.379 4.379 8 H 0.108 0.892 9 N -0.396 5.396 10 C 0.004 3.996 11 C 0.024 3.976 12 H 0.123 0.877 13 O -0.362 6.362 14 C -0.035 4.035 15 N -0.364 5.364 16 C 0.343 3.657 17 O -0.400 6.400 18 C -0.088 4.088 19 C -0.177 4.177 20 C 0.129 3.871 21 O -0.285 6.285 22 N -0.211 5.211 23 C 0.017 3.983 24 C -0.079 4.079 25 C -0.120 4.120 26 C -0.163 4.163 27 C -0.160 4.160 28 C -0.105 4.105 29 H 0.070 0.930 30 H 0.199 0.801 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.224 0.776 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.241 0.759 37 H 0.164 0.836 38 H 0.259 0.741 39 H 0.103 0.897 40 H 0.126 0.874 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.105 0.895 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 30.194 -12.302 -2.069 32.669 hybrid contribution -0.405 1.549 -0.027 1.602 sum 29.788 -10.753 -2.096 31.739 Atomic orbital electron populations 1.69706 1.05143 1.25965 1.57138 1.24684 0.95260 0.97348 1.01720 0.86538 0.79487 0.84732 0.77817 1.21094 1.21693 1.19865 1.19034 0.80465 0.94787 1.43635 0.89235 1.42567 1.03978 1.01925 1.91090 1.21167 0.88312 0.90363 0.99804 1.22474 0.94694 0.92164 0.88273 0.87705 1.86554 1.85872 1.48163 1.15596 1.22159 0.78801 0.98689 1.03803 1.45842 1.06811 1.10045 1.73709 1.18068 0.85239 0.85197 0.77234 1.90747 1.79468 1.20668 1.49069 1.20254 0.94022 0.93119 1.01430 1.22317 0.96189 0.97340 1.01851 1.18792 0.87017 0.85180 0.96146 1.84826 1.86487 1.22285 1.34951 1.66853 1.41732 0.99867 1.12663 1.20794 0.91968 0.90406 0.95165 1.20637 0.92540 0.96949 0.97796 1.20775 0.98869 0.88482 1.03891 1.21682 0.95011 0.99882 0.99692 1.21618 0.97739 0.95800 1.00822 1.20410 0.95545 0.91063 1.03458 0.92972 0.80103 0.94398 0.94976 0.77557 0.90450 0.89818 0.75882 0.83557 0.74059 0.89715 0.87357 0.91573 0.90801 0.90649 0.91305 0.89490 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.13 13.97 55.49 0.78 -28.36 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 22.01 27.73 -169.99 -4.71 17.30 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.27 -6.47 6.52 56.52 0.37 -6.10 16 7 C -0.25 -6.98 10.47 -15.06 -0.16 -7.14 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 N -0.75 -17.28 5.35 -59.91 -0.32 -17.60 16 10 C 0.13 2.31 5.90 -4.04 -0.02 2.28 16 11 C 0.08 1.11 3.09 -26.73 -0.08 1.02 16 12 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 13 O -0.56 -7.56 13.03 -35.23 -0.46 -8.02 16 14 C 0.09 1.00 5.34 -4.04 -0.02 0.98 16 15 N -0.71 -7.24 5.40 -61.15 -0.33 -7.57 16 16 C 0.56 6.33 7.74 -12.18 -0.09 6.24 16 17 O -0.52 -7.09 13.21 5.36 0.07 -7.02 16 18 C -0.08 -0.80 5.91 -104.57 -0.62 -1.41 16 19 C -0.16 -1.42 9.55 -38.92 -0.37 -1.79 16 20 C 0.31 3.07 7.75 -17.32 -0.13 2.94 16 21 O -0.48 -4.04 13.56 -18.76 -0.25 -4.30 16 22 N -0.49 -5.30 10.18 -9.61 -0.10 -5.40 16 23 C 0.15 1.46 6.62 -82.46 -0.55 0.92 16 24 C -0.08 -0.76 5.77 -104.18 -0.60 -1.36 16 25 C -0.08 -0.75 4.29 -28.10 -0.12 -0.87 16 26 C -0.13 -0.82 5.99 -26.68 -0.16 -0.98 16 27 C -0.12 -0.69 5.97 -26.71 -0.16 -0.85 16 28 C -0.07 -0.46 5.91 -28.01 -0.17 -0.62 16 29 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 30 H 0.37 8.39 5.53 -40.82 -0.23 8.17 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.38 4.18 9.05 45.56 0.41 4.59 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.40 3.57 6.47 -40.82 -0.26 3.31 16 37 H 0.15 1.05 6.51 -52.49 -0.34 0.71 16 38 H 0.40 1.36 9.06 45.56 0.41 1.78 16 39 H 0.08 0.81 8.11 -51.93 -0.42 0.39 16 40 H 0.11 1.16 5.92 -51.93 -0.31 0.85 16 41 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 42 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.42 8.10 -51.93 -0.42 -0.01 16 45 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 375.45 15.07 5.66 5.66 Total: -1.00 -35.65 375.45 -8.00 -43.65 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -4.97 Total: 12.22 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -3.35 Total: -0.57 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.03 Total: -58.93 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.64 Total: -19.34 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.30 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.65 -8.00 -43.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268337063.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.575 kcal (2) G-P(sol) polarization free energy of solvation -35.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds