Wall clock time and date at job start Tue Mar 31 2020 18:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00622 * 2 1 4 4 H 1.48503 * 109.47086 * 270.00399 * 3 2 1 5 5 H 1.48503 * 109.46612 * 30.00338 * 3 2 1 6 6 H 1.48497 * 109.46986 * 150.00041 * 3 2 1 7 7 C 1.38819 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99625 * 359.97438 * 7 2 1 9 9 N 1.36937 * 120.00106 * 179.97438 * 7 2 1 10 10 C 1.46494 * 120.00022 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47283 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47269 * 305.00317 * 11 10 9 13 13 O 1.42903 * 109.46459 * 65.00211 * 11 10 9 14 14 C 1.53001 * 109.47376 * 185.00021 * 11 10 9 15 15 N 1.46497 * 109.46900 * 180.02562 * 14 11 10 16 16 C 1.34783 * 119.99638 * 180.02562 * 15 14 11 17 17 O 1.21510 * 119.99985 * 359.97438 * 16 15 14 18 18 C 1.48164 * 119.99522 * 179.97438 * 16 15 14 19 19 C 1.39385 * 120.66610 * 359.72218 * 18 16 15 20 20 C 1.38871 * 118.61032 * 179.76700 * 19 18 16 21 21 O 1.35687 * 119.69640 * 180.34644 * 20 19 18 22 22 N 1.31837 * 120.60810 * 0.63108 * 20 19 18 23 23 C 1.32743 * 122.68591 * 359.73997 * 22 20 19 24 24 C 1.37451 * 120.23900 * 359.75955 * 23 22 20 25 25 C 1.50495 * 122.88278 * 180.73373 * 24 23 22 26 26 C 1.52766 * 110.58192 * 342.37808 * 25 24 23 27 27 C 1.53327 * 108.34712 * 50.79218 * 26 25 24 28 28 C 1.50754 * 117.45294 * 179.63424 * 23 22 20 29 29 H 0.97005 * 119.99686 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99589 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.47040 * 60.00172 * 10 9 7 32 32 H 1.08999 * 109.47079 * 299.99874 * 10 9 7 33 33 H 0.96700 * 114.00311 * 60.00313 * 13 11 10 34 34 H 1.08999 * 109.47164 * 300.00361 * 14 11 10 35 35 H 1.08997 * 109.47124 * 60.00063 * 14 11 10 36 36 H 0.96996 * 120.00310 * 359.97438 * 15 14 11 37 37 H 1.07995 * 120.69698 * 0.02562 * 19 18 16 38 38 H 0.96699 * 114.00054 * 270.28638 * 21 20 19 39 39 H 1.08994 * 109.25676 * 102.66302 * 25 24 23 40 40 H 1.09003 * 109.25194 * 222.09871 * 25 24 23 41 41 H 1.08997 * 109.68530 * 291.08077 * 26 25 24 42 42 H 1.08998 * 109.69085 * 170.50644 * 26 25 24 43 43 H 1.09000 * 109.67144 * 170.47739 * 27 26 25 44 44 H 1.08996 * 109.67618 * 49.94858 * 27 26 25 45 45 H 1.08997 * 109.25703 * 282.31426 * 28 23 22 46 46 H 1.08998 * 109.25427 * 41.78127 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4399 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3796 -1.2024 -0.0011 10 6 4.1119 -2.4711 -0.0011 11 6 5.6162 -2.1916 -0.0024 12 1 5.8652 -1.5461 -0.8446 13 8 5.9814 -1.5443 1.2182 14 6 6.3801 -3.5114 -0.1281 15 7 7.8204 -3.2438 -0.1287 16 6 8.6953 -4.2639 -0.2311 17 8 8.2893 -5.4056 -0.3224 18 6 10.1520 -3.9932 -0.2322 19 6 10.6326 -2.6885 -0.1340 20 6 12.0062 -2.4841 -0.1343 21 8 12.4983 -1.2237 -0.0326 22 7 12.8365 -3.5030 -0.2381 23 6 12.4203 -4.7592 -0.3412 24 6 11.0759 -5.0455 -0.3382 25 6 10.5389 -6.4480 -0.4356 26 6 11.6124 -7.3987 -0.9626 27 6 12.8836 -7.2012 -0.1284 28 6 13.4723 -5.8322 -0.4622 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3623 -0.0014 31 1 3.8482 -3.0428 -0.8909 32 1 3.8489 -3.0424 0.8892 33 1 5.7881 -2.0626 2.0114 34 1 6.1311 -4.1569 0.7142 35 1 6.1015 -4.0051 -1.0590 36 1 8.1444 -2.3324 -0.0562 37 1 9.9512 -1.8544 -0.0551 38 1 12.6254 -0.7813 -0.8830 39 1 10.2186 -6.7797 0.5520 40 1 9.6848 -6.4597 -1.1127 41 1 11.8208 -7.1736 -2.0085 42 1 11.2685 -8.4288 -0.8696 43 1 13.6063 -7.9804 -0.3708 44 1 12.6371 -7.2459 0.9324 45 1 13.8569 -5.8453 -1.4820 46 1 14.2883 -5.6148 0.2269 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268337063.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:37 Heat of formation + Delta-G solvation = -115.022087 kcal Electronic energy + Delta-G solvation = -28410.289338 eV Core-core repulsion = 24298.847872 eV Total energy + Delta-G solvation = -4111.441466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.29386 -40.62502 -39.16981 -38.79633 -36.69402 -36.23149 -35.44489 -34.46386 -33.49683 -31.42728 -30.74737 -30.42377 -27.56781 -25.75576 -24.48991 -24.36477 -23.63086 -22.88045 -21.92721 -20.74616 -19.89734 -19.66732 -18.54663 -18.21396 -17.43968 -17.27017 -16.84889 -16.56196 -16.53894 -16.09443 -16.07663 -15.54076 -15.38441 -15.30983 -15.06541 -14.81772 -14.64507 -14.26817 -14.16716 -13.90102 -13.86523 -13.39852 -13.34625 -13.19664 -12.85948 -12.81564 -12.64545 -12.25678 -11.96402 -11.88666 -11.84042 -11.78787 -11.57917 -11.27662 -11.08507 -10.99483 -10.94888 -10.33050 -10.22480 -9.70137 -9.32776 -8.04438 -5.38319 -0.52182 -0.16846 1.39336 1.41925 1.50129 1.64554 1.83900 2.38699 2.47904 2.58946 3.22180 3.26907 3.34879 3.41190 3.53011 3.63089 3.73068 3.95204 3.97241 4.02985 4.05862 4.12643 4.19084 4.34532 4.41548 4.45162 4.58281 4.61717 4.68376 4.73820 4.75750 4.92005 5.00003 5.02148 5.12286 5.15532 5.18509 5.27455 5.35270 5.43701 5.50613 5.72963 6.18904 6.30930 6.53330 6.73083 6.78455 6.97911 7.06582 7.81900 8.00585 9.16716 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020326 B = 0.002236 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.223672 B =12517.097866 C =13726.955395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.065 4.065 3 Si 0.957 3.043 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.251 1.251 7 C -0.237 4.237 8 H 0.057 0.943 9 N -0.753 5.753 10 C 0.124 3.876 11 C 0.104 3.896 12 H 0.111 0.889 13 O -0.564 6.564 14 C 0.100 3.900 15 N -0.702 5.702 16 C 0.557 3.443 17 O -0.548 6.548 18 C -0.088 4.088 19 C -0.151 4.151 20 C 0.304 3.696 21 O -0.487 6.487 22 N -0.511 5.511 23 C 0.148 3.852 24 C -0.088 4.088 25 C -0.079 4.079 26 C -0.122 4.122 27 C -0.116 4.116 28 C -0.067 4.067 29 H 0.258 0.742 30 H 0.369 0.631 31 H 0.040 0.960 32 H 0.035 0.965 33 H 0.388 0.612 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.414 0.586 37 H 0.166 0.834 38 H 0.422 0.578 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.063 0.937 45 H 0.099 0.901 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.596 -11.638 -2.332 34.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.257 4.257 3 Si 0.784 3.216 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.175 1.175 7 C -0.368 4.368 8 H 0.075 0.925 9 N -0.399 5.399 10 C -0.003 4.003 11 C 0.044 3.956 12 H 0.129 0.871 13 O -0.371 6.371 14 C -0.024 4.024 15 N -0.355 5.355 16 C 0.344 3.656 17 O -0.427 6.427 18 C -0.099 4.099 19 C -0.173 4.173 20 C 0.123 3.877 21 O -0.297 6.297 22 N -0.231 5.231 23 C 0.012 3.988 24 C -0.091 4.091 25 C -0.116 4.116 26 C -0.159 4.159 27 C -0.154 4.154 28 C -0.104 4.104 29 H 0.067 0.933 30 H 0.202 0.798 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.238 0.762 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.251 0.749 37 H 0.183 0.817 38 H 0.283 0.717 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.116 0.884 44 H 0.082 0.918 45 H 0.117 0.883 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 33.118 -11.936 -2.206 35.272 hybrid contribution -1.291 1.348 0.019 1.867 sum 31.827 -10.588 -2.187 33.613 Atomic orbital electron populations 1.69889 1.07178 1.26765 1.59502 1.25544 0.96150 1.01440 1.02526 0.85372 0.78676 0.79390 0.78130 1.20319 1.22414 1.17524 1.19037 0.82727 0.93492 1.41557 0.92472 1.42555 1.02331 1.04082 1.90946 1.21402 0.90913 0.88131 0.99845 1.22176 0.91674 0.93147 0.88589 0.87117 1.86533 1.85660 1.48795 1.16118 1.21939 0.79143 0.97373 1.03958 1.45699 1.06190 1.10350 1.73222 1.18224 0.85767 0.84888 0.76704 1.90744 1.79950 1.21706 1.50323 1.20251 0.93366 0.93911 1.02338 1.22440 0.96297 0.97354 1.01168 1.18967 0.87317 0.85555 0.95818 1.84777 1.86366 1.21736 1.36814 1.66923 1.42308 1.00437 1.13401 1.21212 0.92411 0.90747 0.94438 1.20808 0.92883 0.97270 0.98106 1.20683 0.99101 0.88867 1.02932 1.21675 0.94654 0.99675 0.99904 1.21605 0.97662 0.95801 1.00320 1.20515 0.94893 0.90751 1.04257 0.93302 0.79759 0.94163 0.94674 0.76244 0.90303 0.89799 0.74857 0.81671 0.71668 0.90729 0.89222 0.91194 0.89820 0.88394 0.91784 0.88304 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.81 13.97 21.65 0.30 -62.51 16 2 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 3 Si 0.96 45.20 27.73 68.60 1.90 47.10 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.25 -10.79 6.52 99.48 0.65 -10.14 16 7 C -0.24 -13.34 10.47 84.04 0.88 -12.46 16 8 H 0.06 3.52 8.06 -2.91 -0.02 3.49 16 9 N -0.75 -33.70 5.35 -343.45 -1.84 -35.54 16 10 C 0.12 4.16 5.90 86.38 0.51 4.67 16 11 C 0.10 2.50 3.09 30.60 0.09 2.59 16 12 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 13 O -0.56 -13.72 13.03 -148.98 -1.94 -15.66 16 14 C 0.10 2.04 5.34 86.38 0.46 2.50 16 15 N -0.70 -12.94 5.40 -465.67 -2.52 -15.46 16 16 C 0.56 12.12 7.74 86.88 0.67 12.80 16 17 O -0.55 -14.71 13.21 -3.75 -0.05 -14.76 16 18 C -0.09 -1.72 5.91 -19.83 -0.12 -1.84 16 19 C -0.15 -2.51 9.55 22.70 0.22 -2.29 16 20 C 0.30 5.58 7.75 84.84 0.66 6.24 16 21 O -0.49 -7.31 13.56 -90.06 -1.22 -8.53 16 22 N -0.51 -10.38 10.18 -297.40 -3.03 -13.40 16 23 C 0.15 2.67 6.62 42.25 0.28 2.95 16 24 C -0.09 -1.69 5.77 -19.58 -0.11 -1.80 16 25 C -0.08 -1.40 4.29 29.71 0.13 -1.27 16 26 C -0.12 -1.43 5.99 30.63 0.18 -1.24 16 27 C -0.12 -1.10 5.97 30.61 0.18 -0.91 16 28 C -0.07 -0.80 5.91 29.77 0.18 -0.62 16 29 H 0.26 15.71 8.31 -92.70 -0.77 14.94 16 30 H 0.37 16.00 5.53 -92.71 -0.51 15.48 16 31 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.39 7.59 9.05 -74.06 -0.67 6.92 16 34 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.41 6.23 6.47 -92.71 -0.60 5.63 16 37 H 0.17 1.96 6.51 -2.91 -0.02 1.94 16 38 H 0.42 2.01 9.06 -74.06 -0.67 1.34 16 39 H 0.07 1.45 8.11 -2.39 -0.02 1.43 16 40 H 0.09 1.94 5.92 -2.39 -0.01 1.93 16 41 H 0.07 0.77 8.10 -2.39 -0.02 0.75 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.06 0.68 8.10 -2.39 -0.02 0.66 16 45 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -77.14 375.45 -5.16 -82.30 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: -1.45 Total: 30.51 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 4.68 Total: 5.96 kcal Atomic # 7 Polarization: -119.83 SS G_CDS: -7.08 Total: -126.91 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -3.21 Total: -38.96 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.10 kcal Total: -77.14 -5.16 -82.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268337063.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.723 kcal (2) G-P(sol) polarization free energy of solvation -77.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds