Wall clock time and date at job start Tue Mar 31 2020 19:01:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31625 * 1
3 3 Si 1.86795 * 120.00086 * 2 1
4 4 H 1.48506 * 109.47195 * 270.00233 * 3 2 1
5 5 H 1.48501 * 109.47190 * 29.99925 * 3 2 1
6 6 H 1.48493 * 109.47232 * 150.00183 * 3 2 1
7 7 C 1.38812 * 119.99640 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00177 * 0.02562 * 7 2 1
9 9 N 1.36937 * 119.99787 * 179.97438 * 7 2 1
10 10 C 1.46501 * 119.99905 * 179.97438 * 9 7 2
11 11 C 1.53001 * 109.46938 * 180.02562 * 10 9 7
12 12 H 1.08994 * 109.46991 * 295.00306 * 11 10 9
13 13 N 1.46503 * 109.46970 * 55.00123 * 11 10 9
14 14 C 1.34776 * 119.99867 * 206.50124 * 13 11 10
15 15 O 1.21620 * 119.99908 * 354.99468 * 14 13 11
16 16 C 1.47290 * 120.00282 * 174.99735 * 14 13 11
17 17 C 1.36568 * 125.80924 * 179.97438 * 16 14 13
18 18 C 1.40059 * 106.92591 * 179.75497 * 17 16 14
19 19 C 1.36561 * 106.92936 * 0.22769 * 18 17 16
20 20 C 1.47292 * 125.80984 * 179.97438 * 19 18 17
21 21 N 1.34773 * 120.00070 * 179.97438 * 20 19 18
22 22 O 1.21618 * 119.99494 * 0.02562 * 20 19 18
23 23 O 1.34549 * 108.38700 * 359.97438 * 19 18 17
24 24 C 1.53003 * 109.46791 * 174.99822 * 11 10 9
25 25 C 1.54263 * 110.03032 * 60.58178 * 24 11 10
26 26 C 1.54898 * 104.19323 * 217.10430 * 25 24 11
27 27 C 1.54886 * 102.74940 * 37.93700 * 26 25 24
28 28 C 1.53869 * 110.03367 * 303.40749 * 24 11 10
29 29 H 0.97000 * 119.99444 * 0.02562 * 1 2 3
30 30 H 0.96995 * 119.99736 * 0.02562 * 9 7 2
31 31 H 1.08993 * 109.47010 * 60.00663 * 10 9 7
32 32 H 1.08999 * 109.46828 * 300.00092 * 10 9 7
33 33 H 0.97002 * 120.00173 * 26.50154 * 13 11 10
34 34 H 1.07995 * 126.53386 * 0.02562 * 17 16 14
35 35 H 1.08003 * 126.53493 * 180.20992 * 18 17 16
36 36 H 0.96998 * 120.00300 * 0.02562 * 21 20 19
37 37 H 0.97006 * 120.00024 * 180.02562 * 21 20 19
38 38 H 1.08999 * 110.01374 * 182.01892 * 24 11 10
39 39 H 1.08999 * 110.48769 * 335.77113 * 25 24 11
40 40 H 1.09000 * 110.49276 * 98.42395 * 25 24 11
41 41 H 1.09008 * 110.75027 * 279.62544 * 26 25 24
42 42 H 1.08991 * 110.75656 * 156.25620 * 26 25 24
43 43 H 1.08998 * 110.48569 * 203.38314 * 27 26 25
44 44 H 1.08999 * 110.59381 * 80.79621 * 27 26 25
45 45 H 1.08994 * 110.03713 * 238.56782 * 28 24 11
46 46 H 1.09003 * 110.03595 * 359.95732 * 28 24 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4977 2.0464 -1.4001
5 1 1.4477 2.6526 0.7000
6 1 3.5478 1.4401 0.7000
7 6 2.0102 -1.2022 -0.0005
8 1 1.4702 -2.1375 -0.0014
9 7 3.3796 -1.2022 -0.0011
10 6 4.1121 -2.4710 -0.0011
11 6 5.6163 -2.1914 -0.0011
12 1 5.8941 -1.6980 -0.9324
13 7 5.9516 -1.3233 1.1304
14 6 7.0327 -0.5209 1.0669
15 8 7.7807 -0.5831 0.1100
16 6 7.3082 0.4312 2.1564
17 6 8.3641 1.2953 2.2144
18 6 8.2379 2.0137 3.4101
19 6 7.1133 1.5538 4.0335
20 6 6.5908 2.0261 5.3271
21 7 5.4649 1.4879 5.8361
22 8 7.1749 2.9023 5.9354
23 8 6.5636 0.5959 3.2649
24 6 6.3802 -3.5111 0.1247
25 6 6.0475 -4.4301 -1.0688
26 6 6.0055 -5.8511 -0.4538
27 6 5.3466 -5.6069 0.9265
28 6 5.9347 -4.2593 1.3933
29 1 -0.4849 0.8401 -0.0004
30 1 3.8646 -0.3622 -0.0007
31 1 3.8485 -3.0426 -0.8908
32 1 3.8490 -3.0423 0.8891
33 1 5.3957 -1.3260 1.9253
34 1 9.1448 1.4069 1.4766
35 1 8.9034 2.7842 3.7706
36 1 4.9988 0.7892 5.3507
37 1 5.1206 1.7991 6.6879
38 1 7.4526 -3.3194 0.1616
39 1 5.0777 -4.1691 -1.4924
40 1 6.8264 -4.3660 -1.8285
41 1 7.0128 -6.2508 -0.3358
42 1 5.3933 -6.5172 -1.0617
43 1 5.6142 -6.4016 1.6228
44 1 4.2635 -5.5366 0.8272
45 1 6.7909 -4.4314 2.0454
46 1 5.1747 -3.6819 1.9199
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001270411562.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:01:12
Heat of formation + Delta-G solvation = -54.513711 kcal
Electronic energy + Delta-G solvation = -29612.139753 eV
Core-core repulsion = 25503.322127 eV
Total energy + Delta-G solvation = -4108.817626 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-43.05126 -40.12825 -39.45722 -38.30899 -35.53312 -34.23173 -33.89413 -33.22459
-31.61609 -30.66559 -29.66304 -28.66181 -26.67490 -25.10753 -23.27292 -22.32314
-21.70593 -21.36152 -20.69519 -20.32373 -19.03367 -18.99875 -18.08197 -17.47945
-17.13029 -16.84740 -16.12449 -15.99145 -15.35589 -14.97912 -14.82407 -14.49712
-14.37219 -14.18261 -13.90847 -13.55735 -13.42235 -13.33856 -13.23722 -13.01835
-12.76144 -12.28106 -11.84131 -11.41984 -11.11609 -11.08178 -11.02403 -10.96708
-10.90349 -10.72998 -10.49933 -10.40858 -10.38399 -10.29547 -10.13406 -10.03522
-9.69569 -9.18723 -8.99708 -8.88361 -7.34250 -5.86274 -3.22794 0.40168
1.67635 2.11092 2.81935 2.94121 3.04203 3.23760 3.29090 3.33965
3.39503 4.36860 4.50246 4.56047 4.59871 4.64079 4.68981 4.81654
5.12539 5.22652 5.23989 5.31840 5.39670 5.47697 5.50253 5.53783
5.63737 5.66363 5.70624 5.80233 5.86052 5.93008 5.94060 6.01271
6.13693 6.16519 6.20545 6.24404 6.37398 6.39201 6.42369 6.56578
6.68039 6.91930 7.42529 7.74828 7.88179 7.99237 8.32133 9.10284
9.82703 10.01336 11.31701
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.007493 B = 0.004831 C = 0.003443
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3735.872207 B = 5793.998014 C = 8129.563587
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.009 3.991
3 Si 0.881 3.119
4 H -0.284 1.284
5 H -0.290 1.290
6 H -0.279 1.279
7 C -0.246 4.246
8 H 0.092 0.908
9 N -0.755 5.755
10 C 0.147 3.853
11 C 0.138 3.862
12 H 0.092 0.908
13 N -0.698 5.698
14 C 0.598 3.402
15 O -0.516 6.516
16 C -0.030 4.030
17 C -0.140 4.140
18 C -0.128 4.128
19 C -0.056 4.056
20 C 0.611 3.389
21 N -0.838 5.838
22 O -0.521 6.521
23 O -0.149 6.149
24 C -0.097 4.097
25 C -0.123 4.123
26 C -0.122 4.122
27 C -0.124 4.124
28 C -0.121 4.121
29 H 0.260 0.740
30 H 0.361 0.639
31 H 0.048 0.952
32 H 0.040 0.960
33 H 0.409 0.591
34 H 0.170 0.830
35 H 0.169 0.831
36 H 0.411 0.589
37 H 0.411 0.589
38 H 0.076 0.924
39 H 0.079 0.921
40 H 0.064 0.936
41 H 0.062 0.938
42 H 0.065 0.935
43 H 0.059 0.941
44 H 0.070 0.930
45 H 0.057 0.943
46 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.539 -5.590 7.392 18.093
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.578 5.578
2 C -0.187 4.187
3 Si 0.711 3.289
4 H -0.210 1.210
5 H -0.217 1.217
6 H -0.205 1.205
7 C -0.376 4.376
8 H 0.109 0.891
9 N -0.402 5.402
10 C 0.020 3.980
11 C 0.034 3.966
12 H 0.110 0.890
13 N -0.348 5.348
14 C 0.383 3.617
15 O -0.394 6.394
16 C -0.084 4.084
17 C -0.160 4.160
18 C -0.148 4.148
19 C -0.110 4.110
20 C 0.395 3.605
21 N -0.402 5.402
22 O -0.398 6.398
23 O -0.045 6.045
24 C -0.117 4.117
25 C -0.161 4.161
26 C -0.160 4.160
27 C -0.162 4.162
28 C -0.159 4.159
29 H 0.070 0.930
30 H 0.194 0.806
31 H 0.066 0.934
32 H 0.057 0.943
33 H 0.245 0.755
34 H 0.187 0.813
35 H 0.186 0.814
36 H 0.241 0.759
37 H 0.243 0.757
38 H 0.094 0.906
39 H 0.098 0.902
40 H 0.083 0.917
41 H 0.080 0.920
42 H 0.084 0.916
43 H 0.078 0.922
44 H 0.088 0.912
45 H 0.076 0.924
46 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 15.996 -5.326 7.023 18.263
hybrid contribution -0.032 1.221 0.452 1.302
sum 15.963 -4.105 7.475 18.098
Atomic orbital electron populations
1.69696 1.05044 1.25878 1.57186 1.24645 0.95167 0.97058 1.01852
0.86626 0.79071 0.85197 0.78003 1.21017 1.21666 1.20537 1.19012
0.80397 0.94722 1.43456 0.89069 1.42720 1.04150 1.02036 1.91260
1.21094 0.86847 0.89876 1.00226 1.21484 0.96204 0.89722 0.89165
0.89012 1.45968 1.27266 1.40831 1.20687 1.16677 0.81966 0.79329
0.83734 1.90865 1.47751 1.68989 1.31753 1.22631 0.94382 1.02772
0.88629 1.21968 0.99307 0.95985 0.98767 1.21969 0.97149 1.01364
0.94324 1.22288 0.97834 0.95656 0.95209 1.16610 0.80751 0.81205
0.81928 1.43709 1.27219 1.42749 1.26503 1.90916 1.59182 1.30568
1.59172 1.84062 1.46689 1.46560 1.27165 1.22102 1.00071 0.94025
0.95537 1.22512 1.02525 0.94199 0.96878 1.22458 1.00309 0.96809
0.96407 1.22362 1.00611 0.96716 0.96493 1.22244 1.00392 0.96153
0.97109 0.92976 0.80563 0.93442 0.94278 0.75520 0.81275 0.81356
0.75901 0.75660 0.90595 0.90222 0.91722 0.91959 0.91647 0.92184
0.91156 0.92436 0.91064
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.31 13.97 55.49 0.78 -27.54 16
2 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16
3 Si 0.88 21.76 27.73 -169.99 -4.71 17.04 16
4 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16
5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16
6 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16
7 C -0.25 -6.58 10.47 -15.06 -0.16 -6.73 16
8 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16
9 N -0.76 -16.61 5.24 -59.91 -0.31 -16.93 16
10 C 0.15 2.51 5.27 -4.04 -0.02 2.48 16
11 C 0.14 2.02 1.86 -67.93 -0.13 1.89 16
12 H 0.09 1.49 7.60 -51.93 -0.39 1.09 16
13 N -0.70 -9.95 4.05 -54.92 -0.22 -10.17 16
14 C 0.60 8.98 7.78 -12.58 -0.10 8.88 16
15 O -0.52 -8.79 16.55 5.26 0.09 -8.70 16
16 C -0.03 -0.40 7.13 -36.51 -0.26 -0.66 16
17 C -0.14 -1.68 10.60 -39.50 -0.42 -2.10 16
18 C -0.13 -1.46 10.60 -39.50 -0.42 -1.88 16
19 C -0.06 -0.69 7.14 -36.51 -0.26 -0.95 16
20 C 0.61 7.27 8.08 -12.58 -0.10 7.17 16
21 N -0.84 -7.13 8.87 30.40 0.27 -6.86 16
22 O -0.52 -7.59 17.70 5.26 0.09 -7.50 16
23 O -0.15 -1.91 10.15 4.36 0.04 -1.87 16
24 C -0.10 -1.18 2.96 -89.50 -0.26 -1.45 16
25 C -0.12 -1.38 6.19 -25.07 -0.16 -1.54 16
26 C -0.12 -1.21 6.91 -24.74 -0.17 -1.38 16
27 C -0.12 -1.28 6.83 -25.07 -0.17 -1.45 16
28 C -0.12 -1.34 5.62 -25.61 -0.14 -1.49 16
29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16
30 H 0.36 8.05 5.20 -40.82 -0.21 7.84 16
31 H 0.05 0.83 6.30 -51.93 -0.33 0.50 16
32 H 0.04 0.65 6.12 -51.93 -0.32 0.34 16
33 H 0.41 5.54 8.30 -40.82 -0.34 5.20 16
34 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16
35 H 0.17 1.61 8.06 -52.48 -0.42 1.18 16
36 H 0.41 3.02 8.59 -40.82 -0.35 2.67 16
37 H 0.41 2.69 8.93 -40.82 -0.36 2.32 16
38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16
39 H 0.08 0.97 5.85 -51.93 -0.30 0.66 16
40 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16
41 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16
42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
44 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16
45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
46 H 0.07 0.84 5.85 -51.93 -0.30 0.53 16
LS Contribution 380.14 15.07 5.73 5.73
Total: -1.00 -33.21 380.14 -7.43 -40.63
By element:
Atomic # 1 Polarization: 21.50 SS G_CDS: -6.31 Total: 15.19 kcal
Atomic # 6 Polarization: 3.83 SS G_CDS: -2.86 Total: 0.96 kcal
Atomic # 7 Polarization: -62.00 SS G_CDS: 0.51 Total: -61.49 kcal
Atomic # 8 Polarization: -18.29 SS G_CDS: 0.22 Total: -18.06 kcal
Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.04 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -33.21 -7.43 -40.63 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001270411562.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.881 kcal
(2) G-P(sol) polarization free energy of solvation -33.206 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.086 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.633 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.514 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds