Wall clock time and date at job start Tue Mar 31 2020 19:01:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31625 * 1
3 3 Si 1.86795 * 120.00086 * 2 1
4 4 H 1.48506 * 109.47195 * 270.00233 * 3 2 1
5 5 H 1.48501 * 109.47190 * 29.99925 * 3 2 1
6 6 H 1.48493 * 109.47232 * 150.00183 * 3 2 1
7 7 C 1.38812 * 119.99640 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00177 * 0.02562 * 7 2 1
9 9 N 1.36937 * 119.99787 * 179.97438 * 7 2 1
10 10 C 1.46501 * 119.99905 * 179.97438 * 9 7 2
11 11 C 1.53001 * 109.46938 * 180.02562 * 10 9 7
12 12 H 1.08994 * 109.46991 * 295.00306 * 11 10 9
13 13 N 1.46503 * 109.46970 * 55.00123 * 11 10 9
14 14 C 1.34776 * 119.99867 * 206.50124 * 13 11 10
15 15 O 1.21620 * 119.99908 * 354.99468 * 14 13 11
16 16 C 1.47290 * 120.00282 * 174.99735 * 14 13 11
17 17 C 1.36568 * 125.80924 * 179.97438 * 16 14 13
18 18 C 1.40059 * 106.92591 * 179.75497 * 17 16 14
19 19 C 1.36561 * 106.92936 * 0.22769 * 18 17 16
20 20 C 1.47292 * 125.80984 * 179.97438 * 19 18 17
21 21 N 1.34773 * 120.00070 * 179.97438 * 20 19 18
22 22 O 1.21618 * 119.99494 * 0.02562 * 20 19 18
23 23 O 1.34549 * 108.38700 * 359.97438 * 19 18 17
24 24 C 1.53003 * 109.46791 * 174.99822 * 11 10 9
25 25 C 1.54263 * 110.03032 * 60.58178 * 24 11 10
26 26 C 1.54898 * 104.19323 * 217.10430 * 25 24 11
27 27 C 1.54886 * 102.74940 * 37.93700 * 26 25 24
28 28 C 1.53869 * 110.03367 * 303.40749 * 24 11 10
29 29 H 0.97000 * 119.99444 * 0.02562 * 1 2 3
30 30 H 0.96995 * 119.99736 * 0.02562 * 9 7 2
31 31 H 1.08993 * 109.47010 * 60.00663 * 10 9 7
32 32 H 1.08999 * 109.46828 * 300.00092 * 10 9 7
33 33 H 0.97002 * 120.00173 * 26.50154 * 13 11 10
34 34 H 1.07995 * 126.53386 * 0.02562 * 17 16 14
35 35 H 1.08003 * 126.53493 * 180.20992 * 18 17 16
36 36 H 0.96998 * 120.00300 * 0.02562 * 21 20 19
37 37 H 0.97006 * 120.00024 * 180.02562 * 21 20 19
38 38 H 1.08999 * 110.01374 * 182.01892 * 24 11 10
39 39 H 1.08999 * 110.48769 * 335.77113 * 25 24 11
40 40 H 1.09000 * 110.49276 * 98.42395 * 25 24 11
41 41 H 1.09008 * 110.75027 * 279.62544 * 26 25 24
42 42 H 1.08991 * 110.75656 * 156.25620 * 26 25 24
43 43 H 1.08998 * 110.48569 * 203.38314 * 27 26 25
44 44 H 1.08999 * 110.59381 * 80.79621 * 27 26 25
45 45 H 1.08994 * 110.03713 * 238.56782 * 28 24 11
46 46 H 1.09003 * 110.03595 * 359.95732 * 28 24 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4977 2.0464 -1.4001
5 1 1.4477 2.6526 0.7000
6 1 3.5478 1.4401 0.7000
7 6 2.0102 -1.2022 -0.0005
8 1 1.4702 -2.1375 -0.0014
9 7 3.3796 -1.2022 -0.0011
10 6 4.1121 -2.4710 -0.0011
11 6 5.6163 -2.1914 -0.0011
12 1 5.8941 -1.6980 -0.9324
13 7 5.9516 -1.3233 1.1304
14 6 7.0327 -0.5209 1.0669
15 8 7.7807 -0.5831 0.1100
16 6 7.3082 0.4312 2.1564
17 6 8.3641 1.2953 2.2144
18 6 8.2379 2.0137 3.4101
19 6 7.1133 1.5538 4.0335
20 6 6.5908 2.0261 5.3271
21 7 5.4649 1.4879 5.8361
22 8 7.1749 2.9023 5.9354
23 8 6.5636 0.5959 3.2649
24 6 6.3802 -3.5111 0.1247
25 6 6.0475 -4.4301 -1.0688
26 6 6.0055 -5.8511 -0.4538
27 6 5.3466 -5.6069 0.9265
28 6 5.9347 -4.2593 1.3933
29 1 -0.4849 0.8401 -0.0004
30 1 3.8646 -0.3622 -0.0007
31 1 3.8485 -3.0426 -0.8908
32 1 3.8490 -3.0423 0.8891
33 1 5.3957 -1.3260 1.9253
34 1 9.1448 1.4069 1.4766
35 1 8.9034 2.7842 3.7706
36 1 4.9988 0.7892 5.3507
37 1 5.1206 1.7991 6.6879
38 1 7.4526 -3.3194 0.1616
39 1 5.0777 -4.1691 -1.4924
40 1 6.8264 -4.3660 -1.8285
41 1 7.0128 -6.2508 -0.3358
42 1 5.3933 -6.5172 -1.0617
43 1 5.6142 -6.4016 1.6228
44 1 4.2635 -5.5366 0.8272
45 1 6.7909 -4.4314 2.0454
46 1 5.1747 -3.6819 1.9199
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001270411562.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:01:12
Heat of formation + Delta-G solvation = -79.363773 kcal
Electronic energy + Delta-G solvation = -29613.217332 eV
Core-core repulsion = 25503.322127 eV
Total energy + Delta-G solvation = -4109.895206 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-44.01008 -41.27023 -40.40141 -39.38176 -36.93015 -35.45716 -35.06132 -34.21035
-33.38226 -31.93366 -30.72805 -29.54117 -28.08059 -26.22062 -24.69700 -23.59501
-22.96963 -22.37892 -21.58774 -21.27681 -20.32637 -20.01653 -19.42977 -18.81999
-18.01746 -17.83569 -17.33284 -17.18589 -16.45550 -16.24538 -15.98921 -15.77098
-15.56087 -15.27160 -15.19861 -14.87791 -14.65644 -14.37659 -14.27753 -14.22918
-14.10962 -13.67354 -13.32904 -12.91340 -12.76683 -12.33697 -12.18229 -11.95059
-11.88938 -11.85814 -11.84934 -11.71778 -11.53118 -11.35350 -11.31224 -11.17880
-10.97662 -10.96128 -10.29852 -9.92732 -9.30464 -8.04107 -5.36778 -0.59057
0.71642 1.12001 1.31984 1.35701 1.41259 1.86616 1.89633 1.96073
2.35428 2.43766 3.28405 3.37494 3.47528 3.65638 3.69025 3.76492
3.84591 3.92557 4.07505 4.28648 4.31733 4.36015 4.44915 4.59777
4.68215 4.71269 4.71945 4.84656 4.89109 4.91807 5.02212 5.05203
5.14768 5.17267 5.20649 5.31387 5.34220 5.48700 5.53093 5.58010
5.65412 5.76220 6.11080 6.19228 6.29485 6.84648 6.95976 7.05545
7.80829 7.98319 9.17090
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.007493 B = 0.004831 C = 0.003443
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3735.872207 B = 5793.998014 C = 8129.563587
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.979 5.979
2 C -0.054 4.054
3 Si 0.941 3.059
4 H -0.288 1.288
5 H -0.295 1.295
6 H -0.257 1.257
7 C -0.224 4.224
8 H 0.066 0.934
9 N -0.757 5.757
10 C 0.148 3.852
11 C 0.148 3.852
12 H 0.077 0.923
13 N -0.696 5.696
14 C 0.600 3.400
15 O -0.541 6.541
16 C -0.053 4.053
17 C -0.128 4.128
18 C -0.126 4.126
19 C -0.061 4.061
20 C 0.610 3.390
21 N -0.820 5.820
22 O -0.552 6.552
23 O -0.150 6.150
24 C -0.089 4.089
25 C -0.125 4.125
26 C -0.117 4.117
27 C -0.124 4.124
28 C -0.119 4.119
29 H 0.257 0.743
30 H 0.362 0.638
31 H 0.049 0.951
32 H 0.050 0.950
33 H 0.413 0.587
34 H 0.184 0.816
35 H 0.187 0.813
36 H 0.419 0.581
37 H 0.422 0.578
38 H 0.073 0.927
39 H 0.067 0.933
40 H 0.070 0.930
41 H 0.074 0.926
42 H 0.072 0.928
43 H 0.074 0.926
44 H 0.059 0.941
45 H 0.068 0.932
46 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.439 -5.906 8.132 20.128
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.629 5.629
2 C -0.246 4.246
3 Si 0.770 3.230
4 H -0.214 1.214
5 H -0.222 1.222
6 H -0.182 1.182
7 C -0.355 4.355
8 H 0.084 0.916
9 N -0.403 5.403
10 C 0.022 3.978
11 C 0.044 3.956
12 H 0.095 0.905
13 N -0.345 5.345
14 C 0.386 3.614
15 O -0.420 6.420
16 C -0.107 4.107
17 C -0.149 4.149
18 C -0.146 4.146
19 C -0.115 4.115
20 C 0.394 3.606
21 N -0.384 5.384
22 O -0.432 6.432
23 O -0.046 6.046
24 C -0.109 4.109
25 C -0.163 4.163
26 C -0.155 4.155
27 C -0.161 4.161
28 C -0.156 4.156
29 H 0.066 0.934
30 H 0.195 0.805
31 H 0.067 0.933
32 H 0.068 0.932
33 H 0.249 0.751
34 H 0.202 0.798
35 H 0.205 0.795
36 H 0.250 0.750
37 H 0.256 0.744
38 H 0.091 0.909
39 H 0.086 0.914
40 H 0.089 0.911
41 H 0.092 0.908
42 H 0.091 0.909
43 H 0.093 0.907
44 H 0.078 0.922
45 H 0.086 0.914
46 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 17.910 -5.696 7.783 20.342
hybrid contribution -0.625 1.214 0.237 1.386
sum 17.285 -4.483 8.020 19.575
Atomic orbital electron populations
1.69851 1.06818 1.26432 1.59824 1.25310 0.95844 1.00413 1.03027
0.85623 0.78637 0.80981 0.77730 1.21442 1.22202 1.18190 1.19002
0.82335 0.93510 1.40687 0.91649 1.42719 1.02636 1.03890 1.91024
1.21222 0.88123 0.87851 1.00571 1.21312 0.94491 0.91009 0.88814
0.90534 1.45932 1.27269 1.40742 1.20580 1.16779 0.81606 0.79242
0.83765 1.90847 1.48536 1.69800 1.32836 1.22453 0.95542 1.03684
0.89026 1.22229 0.98818 0.94878 0.98956 1.22245 0.97089 1.01435
0.93862 1.22523 0.98144 0.95489 0.95368 1.16614 0.81245 0.81010
0.81715 1.43616 1.25986 1.42043 1.26727 1.90905 1.60287 1.32045
1.59921 1.84034 1.46729 1.46828 1.27032 1.22029 0.99330 0.92857
0.96698 1.22524 1.02046 0.95006 0.96730 1.22450 1.01117 0.95907
0.95988 1.22363 0.99935 0.96694 0.97144 1.22223 1.00590 0.96302
0.96531 0.93397 0.80491 0.93319 0.93216 0.75061 0.79818 0.79526
0.74995 0.74375 0.90890 0.91399 0.91096 0.90772 0.90945 0.90684
0.92206 0.91371 0.91858
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.98 -60.66 13.97 21.65 0.30 -60.35 16
2 C -0.05 -3.06 5.50 84.86 0.47 -2.59 16
3 Si 0.94 44.85 27.73 68.60 1.90 46.76 16
4 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16
5 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16
6 H -0.26 -11.12 6.52 99.48 0.65 -10.48 16
7 C -0.22 -12.01 10.47 84.03 0.88 -11.13 16
8 H 0.07 3.80 8.06 -2.91 -0.02 3.78 16
9 N -0.76 -32.65 5.24 -343.45 -1.80 -34.45 16
10 C 0.15 4.93 5.27 86.38 0.46 5.39 16
11 C 0.15 4.16 1.86 44.99 0.08 4.24 16
12 H 0.08 2.43 7.60 -2.39 -0.02 2.41 16
13 N -0.70 -18.92 4.05 -445.93 -1.81 -20.73 16
14 C 0.60 17.23 7.78 86.62 0.67 17.91 16
15 O -0.54 -17.84 16.55 -4.09 -0.07 -17.91 16
16 C -0.05 -1.35 7.13 24.26 0.17 -1.18 16
17 C -0.13 -2.83 10.60 22.32 0.24 -2.59 16
18 C -0.13 -2.62 10.60 22.32 0.24 -2.38 16
19 C -0.06 -1.39 7.14 24.26 0.17 -1.22 16
20 C 0.61 13.50 8.08 86.63 0.70 14.20 16
21 N -0.82 -12.37 8.87 -175.98 -1.56 -13.93 16
22 O -0.55 -15.33 17.70 -4.09 -0.07 -15.40 16
23 O -0.15 -3.58 10.15 -7.33 -0.07 -3.65 16
24 C -0.09 -2.03 2.96 -10.07 -0.03 -2.06 16
25 C -0.13 -2.62 6.19 31.67 0.20 -2.42 16
26 C -0.12 -2.04 6.91 31.89 0.22 -1.82 16
27 C -0.12 -2.28 6.83 31.67 0.22 -2.07 16
28 C -0.12 -2.40 5.62 31.32 0.18 -2.22 16
29 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16
30 H 0.36 15.58 5.20 -92.71 -0.48 15.10 16
31 H 0.05 1.66 6.30 -2.39 -0.02 1.65 16
32 H 0.05 1.60 6.12 -2.39 -0.01 1.59 16
33 H 0.41 10.58 8.30 -92.71 -0.77 9.81 16
34 H 0.18 3.41 8.06 -2.91 -0.02 3.38 16
35 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16
36 H 0.42 5.28 8.59 -92.71 -0.80 4.48 16
37 H 0.42 4.70 8.93 -92.70 -0.83 3.87 16
38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16
39 H 0.07 1.58 5.85 -2.39 -0.01 1.57 16
40 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16
41 H 0.07 1.14 8.14 -2.38 -0.02 1.13 16
42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16
43 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16
44 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16
45 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16
46 H 0.06 1.38 5.85 -2.39 -0.01 1.36 16
Total: -1.00 -70.94 380.14 -0.18 -71.12
By element:
Atomic # 1 Polarization: 40.36 SS G_CDS: -1.87 Total: 38.49 kcal
Atomic # 6 Polarization: 5.19 SS G_CDS: 4.86 Total: 10.04 kcal
Atomic # 7 Polarization: -124.59 SS G_CDS: -4.86 Total: -129.46 kcal
Atomic # 8 Polarization: -36.74 SS G_CDS: -0.21 Total: -36.96 kcal
Atomic # 14 Polarization: 44.85 SS G_CDS: 1.90 Total: 46.76 kcal
Total: -70.94 -0.18 -71.12 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001270411562.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.239 kcal
(2) G-P(sol) polarization free energy of solvation -70.941 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.180 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.184 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.125 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.364 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds