Wall clock time and date at job start Tue Mar 31 2020 19:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99914 * 2 1 4 4 H 1.48500 * 109.47058 * 240.00356 * 3 2 1 5 5 H 1.48502 * 109.47246 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47376 * 120.00090 * 3 2 1 7 7 C 1.38811 * 120.00348 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00567 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99776 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99898 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46900 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47542 * 65.00027 * 11 10 9 13 13 N 1.46504 * 109.47377 * 304.99935 * 11 10 9 14 14 C 1.34775 * 120.00105 * 124.67537 * 13 11 10 15 15 O 1.21608 * 119.99998 * 354.74963 * 14 13 11 16 16 C 1.47284 * 119.99942 * 174.75545 * 14 13 11 17 17 C 1.36570 * 125.80920 * 179.97438 * 16 14 13 18 18 C 1.40058 * 106.92991 * 179.97438 * 17 16 14 19 19 C 1.36561 * 106.92645 * 0.02562 * 18 17 16 20 20 C 1.47298 * 125.80796 * 179.97438 * 19 18 17 21 21 N 1.34771 * 119.99887 * 179.97438 * 20 19 18 22 22 O 1.21616 * 119.99746 * 359.97438 * 20 19 18 23 23 O 1.34551 * 125.80808 * 0.28580 * 16 14 13 24 24 C 1.53001 * 109.47082 * 185.00153 * 11 10 9 25 25 C 1.54269 * 110.02795 * 301.46013 * 24 11 10 26 26 C 1.54893 * 104.19654 * 217.10234 * 25 24 11 27 27 C 1.54894 * 102.74569 * 37.94822 * 26 25 24 28 28 C 1.53878 * 110.03279 * 184.29740 * 24 11 10 29 29 H 0.96993 * 120.00123 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99858 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47150 * 59.99590 * 10 9 7 32 32 H 1.08994 * 109.46907 * 299.99618 * 10 9 7 33 33 H 0.97001 * 119.99527 * 304.68003 * 13 11 10 34 34 H 1.08009 * 126.53304 * 359.97438 * 17 16 14 35 35 H 1.08005 * 126.53392 * 179.97438 * 18 17 16 36 36 H 0.96995 * 120.00729 * 0.02562 * 21 20 19 37 37 H 0.97006 * 119.99495 * 179.72359 * 21 20 19 38 38 H 1.08996 * 110.02102 * 62.90562 * 24 11 10 39 39 H 1.08994 * 110.49271 * 335.78627 * 25 24 11 40 40 H 1.09006 * 110.48078 * 98.42882 * 25 24 11 41 41 H 1.08996 * 110.75992 * 279.63266 * 26 25 24 42 42 H 1.08994 * 110.90970 * 156.33224 * 26 25 24 43 43 H 1.08998 * 110.48567 * 203.38077 * 27 26 25 44 44 H 1.08999 * 110.59852 * 80.78686 * 27 26 25 45 45 H 1.09001 * 110.03222 * 238.56442 * 28 24 11 46 46 H 1.08999 * 110.03085 * 0.02562 * 28 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0582 -3.6568 -0.0027 11 6 1.0640 -4.8197 -0.0031 12 1 0.4974 -4.8131 -0.9343 13 7 0.1449 -4.6769 1.1288 14 6 -1.1861 -4.6581 0.9179 15 8 -1.6220 -4.6634 -0.2174 16 6 -2.1128 -4.6310 2.0624 17 6 -3.4762 -4.6097 1.9863 18 6 -3.9578 -4.5887 3.3013 19 6 -2.8679 -4.5973 4.1240 20 6 -2.8996 -4.5812 5.5966 21 7 -1.7473 -4.5927 6.2955 22 8 -3.9655 -4.5574 6.1816 23 8 -1.7600 -4.6171 3.3607 24 6 1.8249 -6.1412 0.1215 25 6 2.8235 -6.2880 -1.0453 26 6 2.7834 -7.7970 -1.3920 27 6 1.2856 -8.1491 -1.2134 28 6 0.8471 -7.3246 0.0146 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0016 31 1 2.6849 -3.7153 0.8872 32 1 2.6848 -3.7137 -0.8928 33 1 0.4944 -4.5958 2.0300 34 1 -4.0699 -4.6093 1.0840 35 1 -4.9937 -4.5684 3.6064 36 1 -0.8972 -4.6113 5.8290 37 1 -1.7682 -4.5780 7.2652 38 1 2.3539 -6.1789 1.0737 39 1 2.5027 -5.6916 -1.8993 40 1 3.8249 -5.9956 -0.7292 41 1 3.4001 -8.3692 -0.6990 42 1 3.1004 -7.9683 -2.4207 43 1 1.1648 -9.2150 -1.0200 44 1 0.7148 -7.8549 -2.0941 45 1 0.9022 -7.9370 0.9146 46 1 -0.1695 -6.9573 -0.1265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270411563.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:16 Heat of formation + Delta-G solvation = -61.203220 kcal Electronic energy + Delta-G solvation = -29379.200265 eV Core-core repulsion = 25270.092560 eV Total energy + Delta-G solvation = -4109.107705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.88274 -39.89823 -39.37030 -38.05001 -35.43562 -34.16011 -33.71762 -33.08135 -31.49279 -30.31337 -29.50868 -28.62154 -26.34891 -24.89526 -23.31597 -22.29396 -21.44171 -21.00109 -20.49889 -20.22729 -19.77982 -18.73504 -17.71038 -17.19562 -17.05602 -16.66661 -16.26057 -15.44488 -15.26207 -14.93554 -14.72685 -14.54708 -14.18733 -14.03686 -13.43705 -13.31859 -13.29452 -13.21561 -13.15942 -13.13478 -12.59397 -12.14920 -11.47671 -11.34451 -11.07905 -11.01399 -10.94420 -10.82172 -10.80220 -10.67075 -10.54091 -10.38616 -10.21422 -10.10384 -10.09634 -10.03466 -9.73972 -8.96873 -8.89216 -8.68636 -6.93824 -5.75705 -3.05854 0.56504 1.85610 2.25932 2.92064 3.09282 3.28036 3.37247 3.42787 3.47187 3.48805 4.47349 4.54585 4.64241 4.66772 4.73261 4.76012 4.89504 5.19715 5.39377 5.46496 5.46945 5.49858 5.53679 5.58469 5.65974 5.69193 5.70937 5.83656 5.87435 5.94554 5.97775 6.08568 6.10772 6.23089 6.28317 6.31329 6.33644 6.38495 6.45557 6.51175 6.61163 6.84669 6.98100 7.61918 7.67836 7.80520 8.24644 8.41662 9.53111 10.10342 10.45082 11.46297 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.006497 B = 0.004661 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4308.369424 B = 6005.925462 C = 9156.626402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.244 4.244 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.143 3.857 11 C 0.136 3.864 12 H 0.104 0.896 13 N -0.696 5.696 14 C 0.603 3.397 15 O -0.509 6.509 16 C -0.019 4.019 17 C -0.141 4.141 18 C -0.124 4.124 19 C -0.063 4.063 20 C 0.613 3.387 21 N -0.841 5.841 22 O -0.522 6.522 23 O -0.152 6.152 24 C -0.097 4.097 25 C -0.116 4.116 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.119 4.119 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.020 0.980 32 H 0.034 0.966 33 H 0.404 0.596 34 H 0.170 0.830 35 H 0.167 0.833 36 H 0.410 0.590 37 H 0.410 0.590 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.288 -17.346 6.877 18.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.015 3.985 11 C 0.032 3.968 12 H 0.122 0.878 13 N -0.344 5.344 14 C 0.388 3.612 15 O -0.386 6.386 16 C -0.074 4.074 17 C -0.162 4.162 18 C -0.144 4.144 19 C -0.117 4.117 20 C 0.397 3.603 21 N -0.404 5.404 22 O -0.399 6.399 23 O -0.047 6.047 24 C -0.117 4.117 25 C -0.154 4.154 26 C -0.162 4.162 27 C -0.162 4.162 28 C -0.157 4.157 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.238 0.762 34 H 0.187 0.813 35 H 0.185 0.815 36 H 0.239 0.761 37 H 0.242 0.758 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.338 -17.216 6.381 18.364 hybrid contribution 0.619 1.199 0.639 1.494 sum 0.281 -16.017 7.020 17.490 Atomic orbital electron populations 1.69665 1.05092 1.25771 1.57179 1.24749 0.95467 0.97659 1.02860 0.86290 0.78518 0.83664 0.77801 1.21235 1.21700 1.21342 1.19147 0.90905 0.84120 1.43327 0.91274 1.42309 1.05996 0.99654 1.89463 1.21025 0.93130 0.85687 0.98672 1.21600 0.90730 0.94191 0.90276 0.87794 1.45701 1.04903 1.72307 1.11522 1.16568 0.81846 0.77077 0.85724 1.90885 1.76891 1.50302 1.20498 1.22657 0.95294 1.07955 0.81482 1.21975 0.92813 1.02532 0.98844 1.21958 1.00084 1.00938 0.91451 1.22168 0.85157 1.12573 0.91780 1.16612 0.84494 0.75881 0.83284 1.43683 1.08623 1.76789 1.11321 1.90911 1.29855 1.50589 1.68557 1.84020 1.33895 1.70374 1.16455 1.22100 0.96048 0.93951 0.99594 1.22396 0.98862 0.96094 0.98050 1.22490 0.96349 0.96313 1.01006 1.22354 0.96217 0.99175 0.98448 1.22182 0.99553 0.96078 0.97862 0.93435 0.78005 0.96187 0.94817 0.76205 0.81293 0.81500 0.76100 0.75846 0.90733 0.90802 0.91297 0.91820 0.91745 0.92182 0.91583 0.92280 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.73 -18.19 5.43 -59.91 -0.33 -18.52 16 10 C 0.14 2.70 5.60 -4.04 -0.02 2.68 16 11 C 0.14 2.12 1.71 -67.93 -0.12 2.00 16 12 H 0.10 1.87 6.91 -51.93 -0.36 1.51 16 13 N -0.70 -10.54 4.02 -54.93 -0.22 -10.76 16 14 C 0.60 10.17 7.10 -12.58 -0.09 10.08 16 15 O -0.51 -10.09 16.19 5.27 0.09 -10.01 16 16 C -0.02 -0.29 7.13 -36.51 -0.26 -0.55 16 17 C -0.14 -1.94 10.60 -39.50 -0.42 -2.36 16 18 C -0.12 -1.56 10.60 -39.51 -0.42 -1.98 16 19 C -0.06 -0.81 7.14 -36.51 -0.26 -1.07 16 20 C 0.61 7.34 8.08 -12.58 -0.10 7.24 16 21 N -0.84 -6.67 8.87 30.40 0.27 -6.40 16 22 O -0.52 -7.73 17.70 5.26 0.09 -7.64 16 23 O -0.15 -2.00 10.15 4.35 0.04 -1.96 16 24 C -0.10 -1.15 2.71 -89.50 -0.24 -1.40 16 25 C -0.12 -1.30 5.32 -25.07 -0.13 -1.43 16 26 C -0.12 -1.19 6.91 -24.73 -0.17 -1.36 16 27 C -0.12 -1.27 6.83 -25.07 -0.17 -1.44 16 28 C -0.12 -1.34 6.24 -25.61 -0.16 -1.50 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.39 10.47 7.31 -40.82 -0.30 10.17 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.03 0.64 7.17 -51.93 -0.37 0.27 16 33 H 0.40 5.42 8.60 -40.82 -0.35 5.07 16 34 H 0.17 2.13 8.06 -52.48 -0.42 1.71 16 35 H 0.17 1.79 8.06 -52.48 -0.42 1.36 16 36 H 0.41 2.59 8.59 -40.82 -0.35 2.24 16 37 H 0.41 2.42 8.93 -40.82 -0.36 2.06 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.91 7.52 -51.93 -0.39 0.52 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.88 6.88 -51.93 -0.36 0.53 16 LS Contribution 387.03 15.07 5.83 5.83 Total: -1.00 -34.54 387.03 -7.95 -42.49 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -6.62 Total: 15.72 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -2.81 Total: 1.60 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: 0.45 Total: -63.40 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: 0.22 Total: -19.60 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.54 -7.95 -42.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270411563.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.716 kcal (2) G-P(sol) polarization free energy of solvation -34.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds