Wall clock time and date at job start Tue Mar 31 2020 19:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99914 * 2 1 4 4 H 1.48500 * 109.47058 * 240.00356 * 3 2 1 5 5 H 1.48502 * 109.47246 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47376 * 120.00090 * 3 2 1 7 7 C 1.38811 * 120.00348 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00567 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99776 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99898 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46900 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47542 * 65.00027 * 11 10 9 13 13 N 1.46504 * 109.47377 * 304.99935 * 11 10 9 14 14 C 1.34775 * 120.00105 * 124.67537 * 13 11 10 15 15 O 1.21608 * 119.99998 * 354.74963 * 14 13 11 16 16 C 1.47284 * 119.99942 * 174.75545 * 14 13 11 17 17 C 1.36570 * 125.80920 * 179.97438 * 16 14 13 18 18 C 1.40058 * 106.92991 * 179.97438 * 17 16 14 19 19 C 1.36561 * 106.92645 * 0.02562 * 18 17 16 20 20 C 1.47298 * 125.80796 * 179.97438 * 19 18 17 21 21 N 1.34771 * 119.99887 * 179.97438 * 20 19 18 22 22 O 1.21616 * 119.99746 * 359.97438 * 20 19 18 23 23 O 1.34551 * 125.80808 * 0.28580 * 16 14 13 24 24 C 1.53001 * 109.47082 * 185.00153 * 11 10 9 25 25 C 1.54269 * 110.02795 * 301.46013 * 24 11 10 26 26 C 1.54893 * 104.19654 * 217.10234 * 25 24 11 27 27 C 1.54894 * 102.74569 * 37.94822 * 26 25 24 28 28 C 1.53878 * 110.03279 * 184.29740 * 24 11 10 29 29 H 0.96993 * 120.00123 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99858 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47150 * 59.99590 * 10 9 7 32 32 H 1.08994 * 109.46907 * 299.99618 * 10 9 7 33 33 H 0.97001 * 119.99527 * 304.68003 * 13 11 10 34 34 H 1.08009 * 126.53304 * 359.97438 * 17 16 14 35 35 H 1.08005 * 126.53392 * 179.97438 * 18 17 16 36 36 H 0.96995 * 120.00729 * 0.02562 * 21 20 19 37 37 H 0.97006 * 119.99495 * 179.72359 * 21 20 19 38 38 H 1.08996 * 110.02102 * 62.90562 * 24 11 10 39 39 H 1.08994 * 110.49271 * 335.78627 * 25 24 11 40 40 H 1.09006 * 110.48078 * 98.42882 * 25 24 11 41 41 H 1.08996 * 110.75992 * 279.63266 * 26 25 24 42 42 H 1.08994 * 110.90970 * 156.33224 * 26 25 24 43 43 H 1.08998 * 110.48567 * 203.38077 * 27 26 25 44 44 H 1.08999 * 110.59852 * 80.78686 * 27 26 25 45 45 H 1.09001 * 110.03222 * 238.56442 * 28 24 11 46 46 H 1.08999 * 110.03085 * 0.02562 * 28 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0582 -3.6568 -0.0027 11 6 1.0640 -4.8197 -0.0031 12 1 0.4974 -4.8131 -0.9343 13 7 0.1449 -4.6769 1.1288 14 6 -1.1861 -4.6581 0.9179 15 8 -1.6220 -4.6634 -0.2174 16 6 -2.1128 -4.6310 2.0624 17 6 -3.4762 -4.6097 1.9863 18 6 -3.9578 -4.5887 3.3013 19 6 -2.8679 -4.5973 4.1240 20 6 -2.8996 -4.5812 5.5966 21 7 -1.7473 -4.5927 6.2955 22 8 -3.9655 -4.5574 6.1816 23 8 -1.7600 -4.6171 3.3607 24 6 1.8249 -6.1412 0.1215 25 6 2.8235 -6.2880 -1.0453 26 6 2.7834 -7.7970 -1.3920 27 6 1.2856 -8.1491 -1.2134 28 6 0.8471 -7.3246 0.0146 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0016 31 1 2.6849 -3.7153 0.8872 32 1 2.6848 -3.7137 -0.8928 33 1 0.4944 -4.5958 2.0300 34 1 -4.0699 -4.6093 1.0840 35 1 -4.9937 -4.5684 3.6064 36 1 -0.8972 -4.6113 5.8290 37 1 -1.7682 -4.5780 7.2652 38 1 2.3539 -6.1789 1.0737 39 1 2.5027 -5.6916 -1.8993 40 1 3.8249 -5.9956 -0.7292 41 1 3.4001 -8.3692 -0.6990 42 1 3.1004 -7.9683 -2.4207 43 1 1.1648 -9.2150 -1.0200 44 1 0.7148 -7.8549 -2.0941 45 1 0.9022 -7.9370 0.9146 46 1 -0.1695 -6.9573 -0.1265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270411563.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:15 Heat of formation + Delta-G solvation = -87.393139 kcal Electronic energy + Delta-G solvation = -29380.335945 eV Core-core repulsion = 25270.092560 eV Total energy + Delta-G solvation = -4110.243385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.95799 -41.14408 -40.35808 -39.16309 -36.91026 -35.39978 -35.02908 -34.17348 -33.17588 -31.71079 -30.69509 -29.51339 -27.79544 -26.16581 -24.96031 -23.53366 -22.66413 -22.18384 -21.51583 -21.25748 -20.82070 -19.76616 -19.22412 -18.69806 -17.97335 -17.77353 -17.47565 -16.78290 -16.49379 -16.19534 -15.94319 -15.72344 -15.47155 -15.23665 -15.08057 -14.90534 -14.45963 -14.29787 -14.22727 -14.17863 -13.93784 -13.63555 -13.00145 -12.82652 -12.63014 -12.33406 -12.19240 -11.92510 -11.88679 -11.87343 -11.79541 -11.65154 -11.49854 -11.41015 -11.27895 -11.26451 -10.93337 -10.92514 -10.20448 -9.85932 -8.99846 -7.93522 -5.23361 -0.53511 0.76405 1.14650 1.46310 1.49494 1.55680 1.92774 1.94550 2.06249 2.39676 2.55729 3.39903 3.45619 3.58460 3.69004 3.73665 3.82118 3.87695 4.15453 4.19559 4.32616 4.36915 4.41488 4.57846 4.61831 4.70789 4.72350 4.75841 4.85006 4.88497 4.91556 5.05210 5.05716 5.12305 5.14516 5.29505 5.30472 5.37110 5.45743 5.49284 5.53554 5.59134 5.69159 6.15679 6.26203 6.38017 6.97955 7.00930 7.33229 8.09440 8.31498 9.29411 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.006497 B = 0.004661 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4308.369424 B = 6005.925462 C = 9156.626402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.973 3.027 4 H -0.278 1.278 5 H -0.300 1.300 6 H -0.274 1.274 7 C -0.243 4.243 8 H 0.080 0.920 9 N -0.744 5.744 10 C 0.142 3.858 11 C 0.147 3.853 12 H 0.074 0.926 13 N -0.687 5.687 14 C 0.601 3.399 15 O -0.550 6.550 16 C -0.044 4.044 17 C -0.138 4.138 18 C -0.128 4.128 19 C -0.060 4.060 20 C 0.614 3.386 21 N -0.817 5.817 22 O -0.552 6.552 23 O -0.144 6.144 24 C -0.088 4.088 25 C -0.119 4.119 26 C -0.116 4.116 27 C -0.125 4.125 28 C -0.116 4.116 29 H 0.249 0.751 30 H 0.371 0.629 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.413 0.587 34 H 0.175 0.825 35 H 0.186 0.814 36 H 0.420 0.580 37 H 0.423 0.577 38 H 0.094 0.906 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.076 0.924 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.236 -18.525 8.317 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.204 1.204 5 H -0.226 1.226 6 H -0.200 1.200 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.387 5.387 10 C 0.015 3.985 11 C 0.043 3.957 12 H 0.092 0.908 13 N -0.336 5.336 14 C 0.387 3.613 15 O -0.429 6.429 16 C -0.098 4.098 17 C -0.159 4.159 18 C -0.148 4.148 19 C -0.114 4.114 20 C 0.397 3.603 21 N -0.381 5.381 22 O -0.432 6.432 23 O -0.040 6.040 24 C -0.107 4.107 25 C -0.157 4.157 26 C -0.153 4.153 27 C -0.162 4.162 28 C -0.154 4.154 29 H 0.057 0.943 30 H 0.203 0.797 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.249 0.751 34 H 0.193 0.807 35 H 0.203 0.797 36 H 0.251 0.749 37 H 0.257 0.743 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.071 0.929 45 H 0.094 0.906 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.719 -18.436 7.856 20.114 hybrid contribution 0.052 1.502 0.225 1.520 sum 1.771 -16.935 8.081 18.847 Atomic orbital electron populations 1.69851 1.06806 1.25950 1.59514 1.25578 0.96235 1.01183 1.03800 0.85221 0.77123 0.79158 0.78298 1.20418 1.22647 1.20028 1.19615 0.91564 0.85176 1.41127 0.90183 1.42540 1.05569 1.01146 1.89425 1.21227 0.93644 0.84364 0.99252 1.21434 0.89910 0.95049 0.89316 0.90792 1.45637 1.04495 1.71556 1.11872 1.16776 0.82370 0.76382 0.85769 1.90853 1.77591 1.52306 1.22173 1.22356 0.95330 1.10392 0.81753 1.22197 0.92565 1.01336 0.99764 1.22205 1.01115 1.00708 0.90752 1.22518 0.85093 1.11386 0.92440 1.16533 0.84982 0.75989 0.82787 1.43533 1.07941 1.74554 1.12041 1.90904 1.31114 1.52424 1.68773 1.83990 1.33942 1.70385 1.15688 1.22066 0.95986 0.91743 1.00948 1.22426 0.98960 0.97333 0.96997 1.22465 0.95939 0.94939 1.01992 1.22363 0.96610 0.99947 0.97312 1.22144 0.97892 0.96073 0.99251 0.94255 0.79717 0.94457 0.94394 0.75084 0.80731 0.79652 0.74858 0.74305 0.88776 0.92677 0.90202 0.90056 0.90991 0.90485 0.92940 0.90556 0.94069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.83 13.06 21.65 0.28 -60.54 16 2 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 3 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.24 -13.41 9.99 84.03 0.84 -12.57 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.74 -37.47 5.43 -343.46 -1.87 -39.34 16 10 C 0.14 5.28 5.60 86.38 0.48 5.77 16 11 C 0.15 4.61 1.71 44.99 0.08 4.68 16 12 H 0.07 2.80 6.91 -2.39 -0.02 2.79 16 13 N -0.69 -21.01 4.02 -445.95 -1.79 -22.80 16 14 C 0.60 21.01 7.10 86.62 0.61 21.63 16 15 O -0.55 -23.06 16.19 -4.06 -0.07 -23.13 16 16 C -0.04 -1.34 7.13 24.26 0.17 -1.17 16 17 C -0.14 -3.85 10.60 22.32 0.24 -3.61 16 18 C -0.13 -3.14 10.60 22.32 0.24 -2.91 16 19 C -0.06 -1.49 7.14 24.26 0.17 -1.32 16 20 C 0.61 13.79 8.08 86.63 0.70 14.49 16 21 N -0.82 -11.20 8.87 -175.98 -1.56 -12.76 16 22 O -0.55 -15.74 17.70 -4.08 -0.07 -15.81 16 23 O -0.14 -3.72 10.15 -7.36 -0.07 -3.79 16 24 C -0.09 -1.96 2.71 -10.07 -0.03 -1.99 16 25 C -0.12 -2.47 5.32 31.67 0.17 -2.30 16 26 C -0.12 -1.93 6.91 31.89 0.22 -1.71 16 27 C -0.12 -2.35 6.83 31.67 0.22 -2.13 16 28 C -0.12 -2.48 6.24 31.32 0.20 -2.28 16 29 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.37 20.75 7.31 -92.71 -0.68 20.07 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 1.41 7.17 -2.39 -0.02 1.39 16 33 H 0.41 10.85 8.60 -92.71 -0.80 10.05 16 34 H 0.18 4.54 8.06 -2.91 -0.02 4.51 16 35 H 0.19 3.78 8.06 -2.91 -0.02 3.76 16 36 H 0.42 4.31 8.59 -92.71 -0.80 3.51 16 37 H 0.42 3.99 8.93 -92.70 -0.83 3.16 16 38 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.05 1.35 7.52 -2.39 -0.02 1.33 16 40 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 43 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.04 1.10 6.88 -2.39 -0.02 1.09 16 Total: -1.00 -75.78 387.03 -0.39 -76.17 By element: Atomic # 1 Polarization: 45.16 SS G_CDS: -2.04 Total: 43.12 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 4.77 Total: 10.68 kcal Atomic # 7 Polarization: -130.51 SS G_CDS: -4.94 Total: -135.45 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -0.21 Total: -42.74 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -75.78 -0.39 -76.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270411563.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.219 kcal (2) G-P(sol) polarization free energy of solvation -75.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds