Wall clock time and date at job start Tue Mar 31 2020 18:13:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86795 * 119.99968 * 2 1
4 4 H 1.48502 * 109.47170 * 239.99893 * 3 2 1
5 5 H 1.48499 * 109.47070 * 359.97438 * 3 2 1
6 6 H 1.48497 * 109.47199 * 119.99782 * 3 2 1
7 7 C 1.37875 * 119.99881 * 179.97438 * 2 1 3
8 8 H 1.08003 * 120.00024 * 180.02562 * 7 2 1
9 9 C 1.50701 * 120.00298 * 0.02562 * 7 2 1
10 10 C 1.53003 * 109.47255 * 180.02562 * 9 7 2
11 11 N 1.46497 * 109.46913 * 179.97438 * 10 9 7
12 12 C 1.46847 * 124.36879 * 90.00357 * 11 10 9
13 13 C 1.54635 * 105.50770 * 163.15525 * 12 11 10
14 14 C 1.53905 * 101.62842 * 24.75344 * 13 12 11
15 15 C 1.53611 * 110.30856 * 216.27736 * 14 13 12
16 16 C 1.55319 * 102.71543 * 260.38132 * 15 14 13
17 17 C 1.54979 * 101.66389 * 325.09266 * 16 15 14
18 18 N 1.46233 * 110.88039 * 96.56196 * 14 13 12
19 19 C 1.34781 * 125.81249 * 302.25814 * 18 14 13
20 20 O 1.21278 * 120.00070 * 359.97438 * 19 18 14
21 21 C 1.50705 * 119.99617 * 179.97438 * 19 18 14
22 22 H 1.09003 * 112.91896 * 308.51273 * 21 19 18
23 23 C 1.53724 * 113.70583 * 79.99789 * 21 19 18
24 24 C 1.51516 * 86.60559 * 114.39925 * 23 21 19
25 25 O 1.21282 * 134.17360 * 179.97438 * 24 23 21
26 26 N 1.35833 * 91.64819 * 359.97438 * 24 23 21
27 27 C 1.34655 * 124.36785 * 270.03512 * 11 10 9
28 28 O 1.21282 * 125.07506 * 0.86343 * 27 11 10
29 29 H 0.96995 * 120.00105 * 0.02562 * 1 2 3
30 30 H 1.08991 * 109.47194 * 59.99862 * 9 7 2
31 31 H 1.09004 * 109.46730 * 299.99504 * 9 7 2
32 32 H 1.08999 * 109.47173 * 59.99516 * 10 9 7
33 33 H 1.09004 * 109.46901 * 299.99932 * 10 9 7
34 34 H 1.09003 * 110.24343 * 44.14087 * 12 11 10
35 35 H 1.09010 * 110.30966 * 282.20200 * 12 11 10
36 36 H 1.09002 * 111.00487 * 142.85031 * 13 12 11
37 37 H 1.09002 * 111.00178 * 266.65874 * 13 12 11
38 38 H 1.08998 * 110.75677 * 18.68901 * 15 14 13
39 39 H 1.08995 * 110.76111 * 142.07275 * 15 14 13
40 40 H 1.09000 * 110.98900 * 83.18901 * 16 15 14
41 41 H 1.09001 * 110.98661 * 206.99758 * 16 15 14
42 42 H 1.09007 * 110.36292 * 155.45301 * 17 16 15
43 43 H 1.09008 * 110.36045 * 277.75936 * 17 16 15
44 44 H 1.09001 * 113.69122 * 228.82093 * 23 21 19
45 45 H 1.08997 * 113.69598 * 359.97073 * 23 21 19
46 46 H 0.96996 * 132.37805 * 180.02562 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1029 1.6964 -1.2125
5 1 1.2841 2.7464 -0.0006
6 1 3.1028 1.6964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0005
10 6 2.2453 -3.6621 0.0018
11 7 1.5128 -4.9308 0.0024
12 6 1.0988 -5.6496 -1.2093
13 6 0.7672 -7.0867 -0.7446
14 6 0.4210 -6.8612 0.7380
15 6 0.9180 -8.0410 1.5870
16 6 -0.3699 -8.8865 1.7845
17 6 -1.4563 -7.7852 1.8786
18 7 -1.0248 -6.7451 0.9237
19 6 -1.8269 -5.8424 0.3250
20 8 -1.3582 -5.0312 -0.4451
21 6 -3.3063 -5.8412 0.6127
22 1 -3.7639 -6.8225 0.4873
23 6 -3.6783 -5.1499 1.9344
24 6 -4.3880 -4.1129 1.0879
25 8 -5.0193 -3.1075 1.3362
26 7 -4.0389 -4.7525 -0.0584
27 6 1.1316 -5.5879 1.1142
28 8 1.3304 -5.2105 2.2496
29 1 -0.4850 0.8400 -0.0004
30 1 0.6247 -2.5571 -0.8896
31 1 0.6241 -2.5567 0.8904
32 1 2.8713 -3.6039 0.8922
33 1 2.8726 -3.6047 -0.8878
34 1 1.9124 -5.6661 -1.9345
35 1 0.2161 -5.1809 -1.6444
36 1 -0.0884 -7.4859 -1.2892
37 1 1.6332 -7.7405 -0.8484
38 1 1.6760 -8.6111 1.0499
39 1 1.3021 -7.6923 2.5456
40 1 -0.5457 -9.5361 0.9271
41 1 -0.3194 -9.4650 2.7069
42 1 -2.4282 -8.1856 1.5899
43 1 -1.4977 -7.3787 2.8892
44 1 -4.3492 -5.7367 2.5618
45 1 -2.8203 -4.7573 2.4800
46 1 -4.2117 -4.5599 -0.9932
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001270829981.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:13:53
Heat of formation + Delta-G solvation = -54.808262 kcal
Electronic energy + Delta-G solvation = -30929.489114 eV
Core-core repulsion = 26820.658715 eV
Total energy + Delta-G solvation = -4108.830399 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.60653 -40.55061 -38.44451 -37.29352 -36.29116 -35.83653 -33.56747 -32.20508
-31.66805 -29.16670 -28.78670 -27.85873 -26.26684 -25.05129 -23.98119 -22.65220
-21.73284 -21.13057 -19.96179 -19.65453 -18.54246 -17.58838 -17.40833 -16.61885
-16.45926 -16.06821 -15.89863 -15.68437 -15.29309 -14.61234 -14.51199 -14.25645
-14.11966 -13.59446 -13.50782 -13.35045 -13.14893 -12.98575 -12.66557 -12.49783
-12.36527 -12.22575 -12.09377 -12.08616 -11.69272 -11.50570 -11.28838 -11.12595
-10.86286 -10.80004 -10.62494 -10.19057 -10.06559 -9.93057 -9.72929 -9.64310
-9.17518 -9.11585 -8.57440 -8.26070 -7.86038 -5.89679 -3.94472 2.24776
2.37123 2.53707 3.10539 3.37899 3.39106 3.43131 3.45273 3.61621
3.84070 4.02921 4.22876 4.29262 4.41285 4.46720 4.53943 4.63331
4.75382 4.77064 4.95743 5.14271 5.19476 5.28955 5.34562 5.44921
5.48735 5.52848 5.54187 5.60384 5.73643 5.81975 5.90035 6.09797
6.11151 6.22182 6.32879 6.52785 6.84763 6.93620 7.07999 7.28114
7.64003 7.79561 7.98807 8.05478 8.11977 8.26384 8.44548 8.70554
9.12738 9.68747 11.21004
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.009955 B = 0.004788 C = 0.003564
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2812.032620 B = 5846.572822 C = 7854.695326
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.888 5.888
2 C 0.060 3.940
3 Si 0.893 3.107
4 H -0.277 1.277
5 H -0.287 1.287
6 H -0.276 1.276
7 C -0.525 4.525
8 H 0.055 0.945
9 C 0.020 3.980
10 C 0.129 3.871
11 N -0.590 5.590
12 C 0.099 3.901
13 C -0.134 4.134
14 C 0.133 3.867
15 C -0.114 4.114
16 C -0.128 4.128
17 C 0.096 3.904
18 N -0.595 5.595
19 C 0.515 3.485
20 O -0.485 6.485
21 C 0.123 3.877
22 H 0.124 0.876
23 C -0.167 4.167
24 C 0.539 3.461
25 O -0.494 6.494
26 N -0.722 5.722
27 C 0.511 3.489
28 O -0.531 6.531
29 H 0.261 0.739
30 H 0.019 0.981
31 H 0.017 0.983
32 H 0.068 0.932
33 H 0.064 0.936
34 H 0.067 0.933
35 H 0.095 0.905
36 H 0.087 0.913
37 H 0.086 0.914
38 H 0.088 0.912
39 H 0.090 0.910
40 H 0.079 0.921
41 H 0.088 0.912
42 H 0.081 0.919
43 H 0.077 0.923
44 H 0.124 0.876
45 H 0.119 0.881
46 H 0.409 0.591
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.341 -25.905 0.491 26.455
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.526 5.526
2 C -0.142 4.142
3 Si 0.720 3.280
4 H -0.203 1.203
5 H -0.213 1.213
6 H -0.202 1.202
7 C -0.564 4.564
8 H 0.073 0.927
9 C -0.018 4.018
10 C 0.009 3.991
11 N -0.322 5.322
12 C -0.025 4.025
13 C -0.172 4.172
14 C 0.044 3.956
15 C -0.153 4.153
16 C -0.166 4.166
17 C -0.026 4.026
18 N -0.333 5.333
19 C 0.300 3.700
20 O -0.356 6.356
21 C 0.013 3.987
22 H 0.142 0.858
23 C -0.208 4.208
24 C 0.323 3.677
25 O -0.366 6.366
26 N -0.382 5.382
27 C 0.295 3.705
28 O -0.408 6.408
29 H 0.071 0.929
30 H 0.038 0.962
31 H 0.035 0.965
32 H 0.086 0.914
33 H 0.082 0.918
34 H 0.086 0.914
35 H 0.113 0.887
36 H 0.105 0.895
37 H 0.105 0.895
38 H 0.107 0.893
39 H 0.109 0.891
40 H 0.097 0.903
41 H 0.106 0.894
42 H 0.100 0.900
43 H 0.095 0.905
44 H 0.142 0.858
45 H 0.137 0.863
46 H 0.250 0.750
Dipole moment (debyes) X Y Z Total
from point charges -5.520 -24.360 0.716 24.987
hybrid contribution 0.435 1.068 -0.640 1.319
sum -5.085 -23.292 0.076 23.841
Atomic orbital electron populations
1.69990 1.06033 1.26651 1.49971 1.25004 0.94797 0.99163 0.95238
0.86653 0.79546 0.83199 0.78552 1.20251 1.21281 1.20201 1.21062
0.92845 0.90865 1.51634 0.92707 1.19302 0.94079 0.90564 0.97852
1.21812 0.94990 0.81307 1.01014 1.48419 1.54690 1.22924 1.06124
1.22256 1.01394 0.90673 0.88146 1.22927 1.02514 0.97625 0.94174
1.21135 0.81721 0.95903 0.96826 1.22566 0.97893 0.93777 1.01024
1.22798 0.93932 0.96743 1.03163 1.22522 0.98513 0.87920 0.93645
1.48185 1.05908 1.33541 1.45645 1.20311 0.87896 0.80485 0.81290
1.90849 1.74950 1.35717 1.34088 1.22114 0.90050 0.94302 0.92228
0.85829 1.23950 1.02768 0.96847 0.97193 1.21794 0.78134 0.83909
0.83837 1.90796 1.41104 1.24412 1.80260 1.48345 1.53950 1.26831
1.09106 1.20430 0.79383 0.85592 0.85103 1.90679 1.57517 1.71598
1.20975 0.92946 0.96216 0.96504 0.91381 0.91764 0.91435 0.88701
0.89490 0.89511 0.89349 0.89122 0.90274 0.89355 0.90022 0.90488
0.85811 0.86259 0.74964
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -28.81 13.29 55.43 0.74 -28.07 16
2 C 0.06 1.83 5.46 -17.82 -0.10 1.74 16
3 Si 0.89 22.86 29.54 -169.99 -5.02 17.84 16
4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16
5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16
7 C -0.53 -15.82 9.11 -34.44 -0.31 -16.13 16
8 H 0.05 1.57 7.74 -52.48 -0.41 1.16 16
9 C 0.02 0.57 5.30 -27.88 -0.15 0.42 16
10 C 0.13 2.95 5.88 -4.04 -0.02 2.93 16
11 N -0.59 -11.56 2.74 -172.47 -0.47 -12.04 16
12 C 0.10 1.52 6.38 -2.99 -0.02 1.50 16
13 C -0.13 -1.48 6.00 -25.40 -0.15 -1.63 16
14 C 0.13 1.70 0.85 -132.38 -0.11 1.59 16
15 C -0.11 -1.03 6.06 -25.18 -0.15 -1.18 16
16 C -0.13 -0.70 7.09 -24.46 -0.17 -0.87 16
17 C 0.10 0.65 6.71 -2.37 -0.02 0.63 16
18 N -0.60 -6.78 2.85 -157.34 -0.45 -7.23 16
19 C 0.51 6.99 6.98 -10.98 -0.08 6.92 16
20 O -0.48 -9.00 12.70 5.56 0.07 -8.93 16
21 C 0.12 1.20 4.18 -68.38 -0.29 0.92 16
22 H 0.12 0.64 7.61 -51.93 -0.40 0.24 16
23 C -0.17 -1.74 7.90 -27.14 -0.21 -1.95 16
24 C 0.54 8.17 9.85 -10.27 -0.10 8.07 16
25 O -0.49 -9.77 18.03 5.56 0.10 -9.67 16
26 N -0.72 -9.12 6.89 -59.15 -0.41 -9.53 16
27 C 0.51 9.72 6.47 -11.09 -0.07 9.65 16
28 O -0.53 -12.14 17.08 5.56 0.09 -12.04 16
29 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16
30 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16
31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16
32 H 0.07 1.61 7.94 -51.93 -0.41 1.20 16
33 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16
34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
35 H 0.10 1.69 5.80 -51.92 -0.30 1.39 16
36 H 0.09 0.84 8.07 -51.93 -0.42 0.42 16
37 H 0.09 0.74 7.45 -51.93 -0.39 0.36 16
38 H 0.09 0.63 7.39 -51.93 -0.38 0.24 16
39 H 0.09 0.99 7.52 -51.93 -0.39 0.60 16
40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16
41 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16
42 H 0.08 0.29 7.34 -51.93 -0.38 -0.10 16
43 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16
44 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16
45 H 0.12 1.48 8.00 -51.93 -0.42 1.07 16
46 H 0.41 4.86 8.96 -40.82 -0.37 4.49 16
LS Contribution 375.92 15.07 5.67 5.67
Total: -1.00 -42.16 375.92 -8.42 -50.57
By element:
Atomic # 1 Polarization: 7.62 SS G_CDS: -6.77 Total: 0.84 kcal
Atomic # 6 Polarization: 14.54 SS G_CDS: -1.96 Total: 12.58 kcal
Atomic # 7 Polarization: -56.27 SS G_CDS: -0.59 Total: -56.86 kcal
Atomic # 8 Polarization: -30.91 SS G_CDS: 0.27 Total: -30.64 kcal
Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal
Total LS contribution 5.67 Total: 5.67 kcal
Total: -42.16 -8.42 -50.57 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001270829981.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.237 kcal
(2) G-P(sol) polarization free energy of solvation -42.155 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.392 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.571 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.808 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds