Wall clock time and date at job start Tue Mar 31 2020 18:13:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86795 * 119.99968 * 2 1
4 4 H 1.48502 * 109.47170 * 239.99893 * 3 2 1
5 5 H 1.48499 * 109.47070 * 359.97438 * 3 2 1
6 6 H 1.48497 * 109.47199 * 119.99782 * 3 2 1
7 7 C 1.37875 * 119.99881 * 179.97438 * 2 1 3
8 8 H 1.08003 * 120.00024 * 180.02562 * 7 2 1
9 9 C 1.50701 * 120.00298 * 0.02562 * 7 2 1
10 10 C 1.53003 * 109.47255 * 180.02562 * 9 7 2
11 11 N 1.46497 * 109.46913 * 179.97438 * 10 9 7
12 12 C 1.46847 * 124.36879 * 90.00357 * 11 10 9
13 13 C 1.54635 * 105.50770 * 163.15525 * 12 11 10
14 14 C 1.53905 * 101.62842 * 24.75344 * 13 12 11
15 15 C 1.53611 * 110.30856 * 216.27736 * 14 13 12
16 16 C 1.55319 * 102.71543 * 260.38132 * 15 14 13
17 17 C 1.54979 * 101.66389 * 325.09266 * 16 15 14
18 18 N 1.46233 * 110.88039 * 96.56196 * 14 13 12
19 19 C 1.34781 * 125.81249 * 302.25814 * 18 14 13
20 20 O 1.21278 * 120.00070 * 359.97438 * 19 18 14
21 21 C 1.50705 * 119.99617 * 179.97438 * 19 18 14
22 22 H 1.09003 * 112.91896 * 308.51273 * 21 19 18
23 23 C 1.53724 * 113.70583 * 79.99789 * 21 19 18
24 24 C 1.51516 * 86.60559 * 114.39925 * 23 21 19
25 25 O 1.21282 * 134.17360 * 179.97438 * 24 23 21
26 26 N 1.35833 * 91.64819 * 359.97438 * 24 23 21
27 27 C 1.34655 * 124.36785 * 270.03512 * 11 10 9
28 28 O 1.21282 * 125.07506 * 0.86343 * 27 11 10
29 29 H 0.96995 * 120.00105 * 0.02562 * 1 2 3
30 30 H 1.08991 * 109.47194 * 59.99862 * 9 7 2
31 31 H 1.09004 * 109.46730 * 299.99504 * 9 7 2
32 32 H 1.08999 * 109.47173 * 59.99516 * 10 9 7
33 33 H 1.09004 * 109.46901 * 299.99932 * 10 9 7
34 34 H 1.09003 * 110.24343 * 44.14087 * 12 11 10
35 35 H 1.09010 * 110.30966 * 282.20200 * 12 11 10
36 36 H 1.09002 * 111.00487 * 142.85031 * 13 12 11
37 37 H 1.09002 * 111.00178 * 266.65874 * 13 12 11
38 38 H 1.08998 * 110.75677 * 18.68901 * 15 14 13
39 39 H 1.08995 * 110.76111 * 142.07275 * 15 14 13
40 40 H 1.09000 * 110.98900 * 83.18901 * 16 15 14
41 41 H 1.09001 * 110.98661 * 206.99758 * 16 15 14
42 42 H 1.09007 * 110.36292 * 155.45301 * 17 16 15
43 43 H 1.09008 * 110.36045 * 277.75936 * 17 16 15
44 44 H 1.09001 * 113.69122 * 228.82093 * 23 21 19
45 45 H 1.08997 * 113.69598 * 359.97073 * 23 21 19
46 46 H 0.96996 * 132.37805 * 180.02562 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1029 1.6964 -1.2125
5 1 1.2841 2.7464 -0.0006
6 1 3.1028 1.6964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0005
10 6 2.2453 -3.6621 0.0018
11 7 1.5128 -4.9308 0.0024
12 6 1.0988 -5.6496 -1.2093
13 6 0.7672 -7.0867 -0.7446
14 6 0.4210 -6.8612 0.7380
15 6 0.9180 -8.0410 1.5870
16 6 -0.3699 -8.8865 1.7845
17 6 -1.4563 -7.7852 1.8786
18 7 -1.0248 -6.7451 0.9237
19 6 -1.8269 -5.8424 0.3250
20 8 -1.3582 -5.0312 -0.4451
21 6 -3.3063 -5.8412 0.6127
22 1 -3.7639 -6.8225 0.4873
23 6 -3.6783 -5.1499 1.9344
24 6 -4.3880 -4.1129 1.0879
25 8 -5.0193 -3.1075 1.3362
26 7 -4.0389 -4.7525 -0.0584
27 6 1.1316 -5.5879 1.1142
28 8 1.3304 -5.2105 2.2496
29 1 -0.4850 0.8400 -0.0004
30 1 0.6247 -2.5571 -0.8896
31 1 0.6241 -2.5567 0.8904
32 1 2.8713 -3.6039 0.8922
33 1 2.8726 -3.6047 -0.8878
34 1 1.9124 -5.6661 -1.9345
35 1 0.2161 -5.1809 -1.6444
36 1 -0.0884 -7.4859 -1.2892
37 1 1.6332 -7.7405 -0.8484
38 1 1.6760 -8.6111 1.0499
39 1 1.3021 -7.6923 2.5456
40 1 -0.5457 -9.5361 0.9271
41 1 -0.3194 -9.4650 2.7069
42 1 -2.4282 -8.1856 1.5899
43 1 -1.4977 -7.3787 2.8892
44 1 -4.3492 -5.7367 2.5618
45 1 -2.8203 -4.7573 2.4800
46 1 -4.2117 -4.5599 -0.9932
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001270829981.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:13:53
Heat of formation + Delta-G solvation = -90.328361 kcal
Electronic energy + Delta-G solvation = -30931.029381 eV
Core-core repulsion = 26820.658715 eV
Total energy + Delta-G solvation = -4110.370666 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-42.66288 -41.68098 -39.72909 -38.35178 -37.56601 -37.33406 -35.63516 -33.69721
-32.77149 -30.79590 -29.79574 -28.96284 -27.22607 -27.00790 -25.06736 -23.66628
-23.46901 -21.99634 -21.28987 -20.77405 -19.78261 -18.74589 -18.58036 -18.49453
-17.60614 -17.21356 -17.16598 -16.85073 -16.72209 -16.52294 -15.79062 -15.52537
-15.35997 -14.93551 -14.54996 -14.48150 -14.37505 -14.33102 -14.13950 -13.86660
-13.65302 -13.40664 -13.24712 -13.01635 -12.97994 -12.87474 -12.73627 -12.46933
-12.31149 -12.06444 -11.97947 -11.78079 -11.54387 -11.45259 -11.31267 -11.25896
-10.97210 -10.67680 -10.25508 -9.68133 -9.50536 -8.28913 -6.45478 1.13002
1.30782 1.32495 1.37362 1.40964 1.45446 1.93388 2.14771 2.33973
2.36715 2.84776 3.02986 3.19591 3.33012 3.41293 3.56522 3.66975
3.85633 3.99542 4.10162 4.21406 4.25793 4.30607 4.50110 4.54254
4.64181 4.64758 4.68525 4.79728 4.82208 4.86175 4.95207 5.00608
5.09764 5.14359 5.23671 5.27066 5.32522 5.38443 5.44613 5.53963
5.75723 5.76905 6.06811 6.29784 6.40360 6.71095 7.03992 7.15801
7.17879 7.25644 8.82605
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.009955 B = 0.004788 C = 0.003564
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2812.032620 B = 5846.572822 C = 7854.695326
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C -0.004 4.004
3 Si 0.977 3.023
4 H -0.256 1.256
5 H -0.283 1.283
6 H -0.265 1.265
7 C -0.549 4.549
8 H 0.071 0.929
9 C 0.041 3.959
10 C 0.142 3.858
11 N -0.602 5.602
12 C 0.089 3.911
13 C -0.113 4.113
14 C 0.135 3.865
15 C -0.114 4.114
16 C -0.112 4.112
17 C 0.082 3.918
18 N -0.592 5.592
19 C 0.502 3.498
20 O -0.549 6.549
21 C 0.138 3.862
22 H 0.193 0.807
23 C -0.148 4.148
24 C 0.513 3.487
25 O -0.558 6.558
26 N -0.722 5.722
27 C 0.492 3.508
28 O -0.585 6.585
29 H 0.262 0.738
30 H -0.015 1.015
31 H -0.042 1.042
32 H 0.055 0.945
33 H 0.088 0.912
34 H 0.087 0.913
35 H 0.065 0.935
36 H 0.109 0.891
37 H 0.123 0.877
38 H 0.115 0.885
39 H 0.064 0.936
40 H 0.107 0.893
41 H 0.111 0.889
42 H 0.130 0.870
43 H 0.071 0.929
44 H 0.181 0.819
45 H 0.093 0.907
46 H 0.408 0.592
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.808 -29.992 0.162 30.375
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.202 4.202
3 Si 0.800 3.200
4 H -0.180 1.180
5 H -0.209 1.209
6 H -0.189 1.189
7 C -0.587 4.587
8 H 0.089 0.911
9 C 0.003 3.997
10 C 0.020 3.980
11 N -0.332 5.332
12 C -0.033 4.033
13 C -0.151 4.151
14 C 0.046 3.954
15 C -0.152 4.152
16 C -0.149 4.149
17 C -0.038 4.038
18 N -0.328 5.328
19 C 0.289 3.711
20 O -0.425 6.425
21 C 0.030 3.970
22 H 0.210 0.790
23 C -0.188 4.188
24 C 0.299 3.701
25 O -0.434 6.434
26 N -0.381 5.381
27 C 0.279 3.721
28 O -0.465 6.465
29 H 0.071 0.929
30 H 0.003 0.997
31 H -0.023 1.023
32 H 0.073 0.927
33 H 0.106 0.894
34 H 0.106 0.894
35 H 0.083 0.917
36 H 0.128 0.872
37 H 0.141 0.859
38 H 0.133 0.867
39 H 0.082 0.918
40 H 0.126 0.874
41 H 0.130 0.870
42 H 0.148 0.852
43 H 0.090 0.910
44 H 0.198 0.802
45 H 0.112 0.888
46 H 0.249 0.751
Dipole moment (debyes) X Y Z Total
from point charges -4.963 -28.571 0.374 29.001
hybrid contribution 0.281 2.352 -0.528 2.427
sum -4.682 -26.219 -0.154 26.634
Atomic orbital electron populations
1.70191 1.08422 1.27908 1.50970 1.26175 0.95725 1.04109 0.94150
0.85332 0.78098 0.76939 0.79657 1.18008 1.20881 1.18932 1.21559
0.93779 0.91733 1.51667 0.91124 1.19001 0.93989 0.93469 0.93253
1.21338 0.93734 0.81560 1.01407 1.48547 1.54431 1.21860 1.08398
1.22472 1.00824 0.92984 0.86976 1.22977 1.04866 0.94829 0.92455
1.21245 0.82192 0.93306 0.98704 1.22637 1.00516 0.92809 0.99225
1.22858 0.90465 0.95968 1.05620 1.23007 1.01432 0.86978 0.92377
1.48392 1.05104 1.33751 1.45514 1.21087 0.89596 0.79833 0.80590
1.90855 1.76305 1.38215 1.37159 1.22494 0.87668 0.96198 0.90600
0.79022 1.23985 1.01882 0.95337 0.97574 1.22808 0.77660 0.83883
0.85721 1.90739 1.43962 1.27121 1.81601 1.48561 1.53141 1.27459
1.08930 1.21785 0.78628 0.87659 0.84042 1.90622 1.59298 1.73613
1.23017 0.92901 0.99699 1.02334 0.92664 0.89398 0.89436 0.91705
0.87218 0.85859 0.86686 0.91758 0.87445 0.87042 0.85219 0.91038
0.80200 0.88845 0.75073
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -64.09 13.29 21.45 0.28 -63.81 16
2 C 0.00 -0.24 5.46 84.65 0.46 0.22 16
3 Si 0.98 48.05 29.54 68.60 2.03 50.07 16
4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16
5 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16
6 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16
7 C -0.55 -34.61 9.11 25.60 0.23 -34.38 16
8 H 0.07 4.13 7.74 -2.91 -0.02 4.10 16
9 C 0.04 2.53 5.30 29.85 0.16 2.69 16
10 C 0.14 6.89 5.88 86.38 0.51 7.40 16
11 N -0.60 -24.75 2.74 -818.02 -2.24 -26.99 16
12 C 0.09 2.78 6.38 86.87 0.55 3.33 16
13 C -0.11 -2.18 6.00 31.46 0.19 -1.99 16
14 C 0.13 3.22 0.85 3.38 0.00 3.22 16
15 C -0.11 -1.67 6.06 31.60 0.19 -1.48 16
16 C -0.11 -0.59 7.09 32.07 0.23 -0.36 16
17 C 0.08 0.72 6.71 86.84 0.58 1.30 16
18 N -0.59 -12.17 2.85 -770.09 -2.20 -14.37 16
19 C 0.50 13.31 6.98 87.66 0.61 13.93 16
20 O -0.55 -21.55 12.70 -3.02 -0.04 -21.59 16
21 C 0.14 2.39 4.18 44.22 0.18 2.57 16
22 H 0.19 0.77 7.61 -2.39 -0.02 0.75 16
23 C -0.15 -2.89 7.90 30.37 0.24 -2.65 16
24 C 0.51 16.25 9.85 87.64 0.86 17.11 16
25 O -0.56 -23.77 18.03 -3.03 -0.05 -23.83 16
26 N -0.72 -18.49 6.89 -458.83 -3.16 -21.65 16
27 C 0.49 19.48 6.47 87.64 0.57 20.05 16
28 O -0.59 -28.59 17.08 -3.04 -0.05 -28.64 16
29 H 0.26 16.93 8.31 -92.71 -0.77 16.16 16
30 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16
31 H -0.04 -3.03 8.14 -2.39 -0.02 -3.05 16
32 H 0.05 2.79 7.94 -2.39 -0.02 2.77 16
33 H 0.09 3.79 8.14 -2.38 -0.02 3.77 16
34 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16
35 H 0.06 2.45 5.80 -2.38 -0.01 2.44 16
36 H 0.11 1.68 8.07 -2.39 -0.02 1.66 16
37 H 0.12 1.50 7.45 -2.39 -0.02 1.48 16
38 H 0.11 1.08 7.39 -2.39 -0.02 1.06 16
39 H 0.06 1.32 7.52 -2.39 -0.02 1.30 16
40 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16
41 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16
42 H 0.13 -0.05 7.34 -2.38 -0.02 -0.07 16
43 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16
44 H 0.18 1.44 8.14 -2.39 -0.02 1.42 16
45 H 0.09 2.40 8.00 -2.39 -0.02 2.38 16
46 H 0.41 10.16 8.96 -92.71 -0.83 9.33 16
Total: -1.00 -108.17 375.92 0.32 -107.85
By element:
Atomic # 1 Polarization: 11.81 SS G_CDS: 0.18 Total: 11.99 kcal
Atomic # 6 Polarization: 25.39 SS G_CDS: 5.58 Total: 30.97 kcal
Atomic # 7 Polarization: -119.50 SS G_CDS: -7.31 Total: -126.81 kcal
Atomic # 8 Polarization: -73.92 SS G_CDS: -0.14 Total: -74.06 kcal
Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.07 kcal
Total: -108.17 0.32 -107.85 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001270829981.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.519 kcal
(2) G-P(sol) polarization free energy of solvation -108.172 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.653 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.324 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.848 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.328 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds