Wall clock time and date at job start Tue Mar 31 2020 18:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00267 * 2 1 4 4 H 1.48497 * 109.46987 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47459 * 119.99848 * 3 2 1 6 6 H 1.48500 * 109.46758 * 239.99545 * 3 2 1 7 7 C 1.37883 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99809 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00119 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47402 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47582 * 174.71425 * 10 9 7 12 12 C 1.34276 * 119.37930 * 84.23960 * 11 10 9 13 13 O 1.21284 * 118.97252 * 1.95929 * 12 11 10 14 14 C 1.50266 * 122.06839 * 181.72252 * 12 11 10 15 15 O 1.42829 * 110.55830 * 342.08630 * 14 12 11 16 16 C 1.43387 * 113.33828 * 51.09174 * 15 14 12 17 17 C 1.45911 * 119.38293 * 264.51750 * 11 10 9 18 18 C 1.53480 * 113.81398 * 32.91346 * 17 11 10 19 19 N 1.47668 * 85.99125 * 222.05471 * 18 17 11 20 20 C 1.34779 * 134.45962 * 204.32519 * 19 18 17 21 21 O 1.21283 * 120.00064 * 180.02562 * 20 19 18 22 22 C 1.50700 * 120.00035 * 359.97438 * 20 19 18 23 23 H 1.08998 * 110.29087 * 320.67889 * 22 20 19 24 24 C 1.54691 * 110.31877 * 82.91208 * 22 20 19 25 25 C 1.54832 * 100.79656 * 142.85736 * 24 22 20 26 26 C 1.51260 * 103.78173 * 336.46606 * 25 24 22 27 27 N 1.27270 * 111.24291 * 15.93030 * 26 25 24 28 28 C 1.47660 * 91.08181 * 24.32169 * 19 18 17 29 29 H 0.96999 * 119.99300 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47134 * 300.00361 * 9 7 2 31 31 H 1.09004 * 109.47021 * 59.99658 * 9 7 2 32 32 H 1.09005 * 109.47133 * 294.71363 * 10 9 7 33 33 H 1.08997 * 109.47202 * 54.71369 * 10 9 7 34 34 H 1.08993 * 109.41303 * 221.69683 * 14 12 11 35 35 H 1.08996 * 109.03868 * 102.23484 * 14 12 11 36 36 H 1.08999 * 109.70885 * 174.68751 * 16 15 14 37 37 H 1.09004 * 109.73966 * 54.08610 * 16 15 14 38 38 H 1.08990 * 113.79114 * 336.32596 * 18 17 11 39 39 H 1.09008 * 113.78808 * 107.78836 * 18 17 11 40 40 H 1.08997 * 111.15050 * 260.73888 * 24 22 20 41 41 H 1.09004 * 111.15161 * 24.97100 * 24 22 20 42 42 H 1.08992 * 110.55873 * 217.89750 * 25 24 22 43 43 H 1.08990 * 110.68552 * 95.10510 * 25 24 22 44 44 H 1.08000 * 124.37992 * 195.95932 * 26 25 24 45 45 H 1.09009 * 113.79329 * 221.41724 * 28 19 18 46 46 H 1.09000 * 113.79275 * 89.94776 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1030 1.6962 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5170 -4.9270 0.1291 12 6 1.0074 -5.5071 -0.9695 13 8 1.1937 -4.9865 -2.0489 14 6 0.2180 -6.7840 -0.9041 15 8 0.4521 -7.4556 0.3345 16 6 0.2761 -6.6117 1.4804 17 6 1.3539 -5.5296 1.4479 18 6 1.2310 -4.5069 2.5856 19 7 2.1241 -5.4024 3.3479 20 6 2.3466 -5.6211 4.6590 21 8 3.1669 -6.4443 5.0059 22 6 1.5769 -4.8419 5.6942 23 1 1.4595 -3.8056 5.3771 24 6 0.1942 -5.4916 5.9371 25 6 0.0380 -5.2791 7.4628 26 6 1.4612 -5.1349 7.9542 27 7 2.2604 -4.9037 6.9911 28 6 2.6757 -5.9623 2.0978 29 1 -0.4849 0.8401 -0.0004 30 1 0.6240 -2.5566 0.8903 31 1 0.6246 -2.5570 -0.8897 32 1 2.8086 -3.6595 -0.9313 33 1 2.9318 -3.5522 0.8411 34 1 0.5127 -7.4347 -1.7273 35 1 -0.8431 -6.5509 -0.9919 36 1 0.3758 -7.2026 2.3908 37 1 -0.7104 -6.1489 1.4487 38 1 1.6727 -3.5375 2.3551 39 1 0.2261 -4.4302 3.0012 40 1 -0.5878 -4.9702 5.3853 41 1 0.2088 -6.5525 5.6872 42 1 -0.4400 -6.1439 7.9228 43 1 -0.5319 -4.3732 7.6690 44 1 1.7607 -5.2180 8.9885 45 1 2.8192 -7.0425 2.1255 46 1 3.5467 -5.4253 1.7223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271516680.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:47 Heat of formation + Delta-G solvation = -36.368035 kcal Electronic energy + Delta-G solvation = -30206.156483 eV Core-core repulsion = 26098.125712 eV Total energy + Delta-G solvation = -4108.030770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.54595 -40.19327 -38.91116 -37.65125 -37.26586 -34.81864 -33.04917 -31.19355 -30.46539 -29.94334 -29.28665 -27.64276 -26.52321 -26.33788 -24.32710 -22.78316 -21.75327 -21.22481 -20.36667 -18.83351 -18.34179 -18.12867 -17.38779 -16.77820 -16.36844 -16.20728 -16.02357 -15.54435 -15.33531 -15.00883 -14.69741 -14.59464 -14.18240 -14.15146 -13.60682 -13.43157 -13.33598 -13.07783 -12.87510 -12.52504 -12.42279 -12.36372 -12.09246 -11.99470 -11.88373 -11.65015 -11.52373 -11.12428 -10.98558 -10.81750 -10.51320 -10.46703 -10.05244 -9.99323 -9.89319 -9.64170 -9.43214 -9.18080 -8.75393 -8.45675 -8.31021 -6.11698 -4.15266 1.88726 2.42980 2.58123 2.71672 3.15248 3.27366 3.32123 3.35286 3.53167 3.93804 4.05090 4.15841 4.22447 4.30870 4.38858 4.52277 4.57079 4.61607 4.71924 4.94158 5.02232 5.20454 5.21948 5.24051 5.25162 5.27633 5.36838 5.43365 5.45493 5.49287 5.52992 5.58608 5.69126 5.82802 5.89051 6.01083 6.35519 6.49068 6.65797 6.71848 7.31716 7.39141 7.52965 7.57406 7.75531 7.87084 8.06863 8.21206 8.35323 8.90781 9.49644 10.99328 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008438 B = 0.004405 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3317.335459 B = 6354.999081 C = 8744.731496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.014 3.986 10 C 0.111 3.889 11 N -0.585 5.585 12 C 0.485 3.515 13 O -0.527 6.527 14 C 0.047 3.953 15 O -0.367 6.367 16 C 0.076 3.924 17 C 0.103 3.897 18 C 0.096 3.904 19 N -0.643 5.643 20 C 0.556 3.444 21 O -0.525 6.525 22 C 0.026 3.974 23 H 0.117 0.883 24 C -0.139 4.139 25 C -0.150 4.150 26 C 0.130 3.870 27 N -0.470 5.470 28 C 0.108 3.892 29 H 0.262 0.738 30 H 0.018 0.982 31 H 0.025 0.975 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.129 0.871 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.177 0.823 45 H 0.091 0.909 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.409 -13.830 12.114 18.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.024 4.024 10 C -0.009 4.009 11 N -0.318 5.318 12 C 0.272 3.728 13 O -0.404 6.404 14 C -0.033 4.033 15 O -0.285 6.285 16 C -0.001 4.001 17 C 0.015 3.985 18 C -0.028 4.028 19 N -0.380 5.380 20 C 0.345 3.655 21 O -0.399 6.399 22 C -0.087 4.087 23 H 0.135 0.865 24 C -0.178 4.178 25 C -0.189 4.189 26 C -0.085 4.085 27 N -0.176 5.176 28 C -0.015 4.015 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.043 0.957 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.147 0.853 35 H 0.106 0.894 36 H 0.133 0.867 37 H 0.092 0.908 38 H 0.137 0.863 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.194 0.806 45 H 0.109 0.891 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.913 -13.932 11.585 18.352 hybrid contribution -0.513 1.398 -0.052 1.490 sum -3.426 -12.534 11.533 17.374 Atomic orbital electron populations 1.69948 1.06067 1.26889 1.50142 1.24961 0.94822 0.99224 0.94950 0.86643 0.79612 0.82945 0.78754 1.21228 1.20189 1.20102 1.21027 0.93004 0.90602 1.51682 0.92568 1.19426 0.94293 0.90786 0.97882 1.22011 0.95756 0.81386 1.01742 1.47758 1.54987 1.24346 1.04686 1.20946 0.80505 0.86958 0.84404 1.90774 1.57783 1.64463 1.27351 1.22842 1.00103 0.92245 0.88098 1.88149 1.90948 1.35883 1.13510 1.22698 0.96192 0.91053 0.90200 1.22596 0.97108 0.94875 0.83954 1.23896 0.95709 0.96002 0.87145 1.49810 1.42678 1.41869 1.03688 1.19660 0.82324 0.82927 0.80636 1.90710 1.34505 1.35111 1.79609 1.22889 0.92404 1.01218 0.92150 0.86539 1.23021 0.95972 1.02224 0.96629 1.22563 0.97621 1.03892 0.94858 1.26783 0.91302 0.91164 0.99242 1.72773 1.34172 1.11600 0.99010 1.23575 0.96876 1.00975 0.80124 0.92833 0.96385 0.95707 0.90563 0.91465 0.85297 0.89370 0.86712 0.90841 0.86295 0.89117 0.88921 0.90070 0.89226 0.88740 0.80610 0.89078 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.01 9.11 -34.44 -0.31 -14.33 16 8 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.01 0.33 4.92 -27.89 -0.14 0.20 16 10 C 0.11 2.15 4.27 -4.04 -0.02 2.14 16 11 N -0.59 -9.48 2.67 -162.65 -0.43 -9.92 16 12 C 0.48 8.15 7.59 -11.42 -0.09 8.06 16 13 O -0.53 -11.14 16.55 5.55 0.09 -11.04 16 14 C 0.05 0.56 6.94 35.80 0.25 0.81 16 15 O -0.37 -4.30 10.84 -35.23 -0.38 -4.69 16 16 C 0.08 0.80 5.98 37.04 0.22 1.02 16 17 C 0.10 1.32 1.51 -135.76 -0.20 1.11 16 18 C 0.10 1.21 6.92 -3.16 -0.02 1.19 16 19 N -0.64 -8.40 3.49 -180.43 -0.63 -9.03 16 20 C 0.56 8.13 7.25 -10.98 -0.08 8.05 16 21 O -0.52 -9.68 17.31 5.55 0.10 -9.58 16 22 C 0.03 0.31 3.70 -68.07 -0.25 0.06 16 23 H 0.12 1.35 8.13 -51.93 -0.42 0.93 16 24 C -0.14 -1.16 6.78 -24.88 -0.17 -1.33 16 25 C -0.15 -0.96 6.90 -26.64 -0.18 -1.14 16 26 C 0.13 1.08 12.06 -13.89 -0.17 0.92 16 27 N -0.47 -6.00 10.62 -52.31 -0.56 -6.55 16 28 C 0.11 1.40 7.84 -3.15 -0.02 1.38 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.02 0.43 6.77 -51.93 -0.35 0.08 16 31 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.61 7.48 -51.93 -0.39 1.22 16 33 H 0.07 1.21 6.11 -51.93 -0.32 0.89 16 34 H 0.13 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.11 1.04 7.97 -51.93 -0.41 0.62 16 37 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 38 H 0.12 1.81 5.35 -51.93 -0.28 1.54 16 39 H 0.09 0.93 8.09 -51.92 -0.42 0.51 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.71 7.90 -51.93 -0.41 0.30 16 42 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.09 1.13 8.09 -51.92 -0.42 0.71 16 46 H 0.09 1.27 7.32 -51.93 -0.38 0.89 16 LS Contribution 377.15 15.07 5.68 5.68 Total: -1.00 -35.91 377.15 -8.42 -44.33 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.72 Total: -0.09 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: -1.28 Total: 9.74 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: -0.88 Total: -50.35 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.19 Total: -25.31 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.91 -8.42 -44.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271516680.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.963 kcal (2) G-P(sol) polarization free energy of solvation -35.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds