Wall clock time and date at job start Tue Mar 31 2020 18:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00267 * 2 1 4 4 H 1.48497 * 109.46987 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47459 * 119.99848 * 3 2 1 6 6 H 1.48500 * 109.46758 * 239.99545 * 3 2 1 7 7 C 1.37883 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99809 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00119 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47402 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47582 * 174.71425 * 10 9 7 12 12 C 1.34276 * 119.37930 * 84.23960 * 11 10 9 13 13 O 1.21284 * 118.97252 * 1.95929 * 12 11 10 14 14 C 1.50266 * 122.06839 * 181.72252 * 12 11 10 15 15 O 1.42829 * 110.55830 * 342.08630 * 14 12 11 16 16 C 1.43387 * 113.33828 * 51.09174 * 15 14 12 17 17 C 1.45911 * 119.38293 * 264.51750 * 11 10 9 18 18 C 1.53480 * 113.81398 * 32.91346 * 17 11 10 19 19 N 1.47668 * 85.99125 * 222.05471 * 18 17 11 20 20 C 1.34779 * 134.45962 * 204.32519 * 19 18 17 21 21 O 1.21283 * 120.00064 * 180.02562 * 20 19 18 22 22 C 1.50700 * 120.00035 * 359.97438 * 20 19 18 23 23 H 1.08998 * 110.29087 * 320.67889 * 22 20 19 24 24 C 1.54691 * 110.31877 * 82.91208 * 22 20 19 25 25 C 1.54832 * 100.79656 * 142.85736 * 24 22 20 26 26 C 1.51260 * 103.78173 * 336.46606 * 25 24 22 27 27 N 1.27270 * 111.24291 * 15.93030 * 26 25 24 28 28 C 1.47660 * 91.08181 * 24.32169 * 19 18 17 29 29 H 0.96999 * 119.99300 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47134 * 300.00361 * 9 7 2 31 31 H 1.09004 * 109.47021 * 59.99658 * 9 7 2 32 32 H 1.09005 * 109.47133 * 294.71363 * 10 9 7 33 33 H 1.08997 * 109.47202 * 54.71369 * 10 9 7 34 34 H 1.08993 * 109.41303 * 221.69683 * 14 12 11 35 35 H 1.08996 * 109.03868 * 102.23484 * 14 12 11 36 36 H 1.08999 * 109.70885 * 174.68751 * 16 15 14 37 37 H 1.09004 * 109.73966 * 54.08610 * 16 15 14 38 38 H 1.08990 * 113.79114 * 336.32596 * 18 17 11 39 39 H 1.09008 * 113.78808 * 107.78836 * 18 17 11 40 40 H 1.08997 * 111.15050 * 260.73888 * 24 22 20 41 41 H 1.09004 * 111.15161 * 24.97100 * 24 22 20 42 42 H 1.08992 * 110.55873 * 217.89750 * 25 24 22 43 43 H 1.08990 * 110.68552 * 95.10510 * 25 24 22 44 44 H 1.08000 * 124.37992 * 195.95932 * 26 25 24 45 45 H 1.09009 * 113.79329 * 221.41724 * 28 19 18 46 46 H 1.09000 * 113.79275 * 89.94776 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1030 1.6962 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5170 -4.9270 0.1291 12 6 1.0074 -5.5071 -0.9695 13 8 1.1937 -4.9865 -2.0489 14 6 0.2180 -6.7840 -0.9041 15 8 0.4521 -7.4556 0.3345 16 6 0.2761 -6.6117 1.4804 17 6 1.3539 -5.5296 1.4479 18 6 1.2310 -4.5069 2.5856 19 7 2.1241 -5.4024 3.3479 20 6 2.3466 -5.6211 4.6590 21 8 3.1669 -6.4443 5.0059 22 6 1.5769 -4.8419 5.6942 23 1 1.4595 -3.8056 5.3771 24 6 0.1942 -5.4916 5.9371 25 6 0.0380 -5.2791 7.4628 26 6 1.4612 -5.1349 7.9542 27 7 2.2604 -4.9037 6.9911 28 6 2.6757 -5.9623 2.0978 29 1 -0.4849 0.8401 -0.0004 30 1 0.6240 -2.5566 0.8903 31 1 0.6246 -2.5570 -0.8897 32 1 2.8086 -3.6595 -0.9313 33 1 2.9318 -3.5522 0.8411 34 1 0.5127 -7.4347 -1.7273 35 1 -0.8431 -6.5509 -0.9919 36 1 0.3758 -7.2026 2.3908 37 1 -0.7104 -6.1489 1.4487 38 1 1.6727 -3.5375 2.3551 39 1 0.2261 -4.4302 3.0012 40 1 -0.5878 -4.9702 5.3853 41 1 0.2088 -6.5525 5.6872 42 1 -0.4400 -6.1439 7.9228 43 1 -0.5319 -4.3732 7.6690 44 1 1.7607 -5.2180 8.9885 45 1 2.8192 -7.0425 2.1255 46 1 3.5467 -5.4253 1.7223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271516680.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:46 Heat of formation + Delta-G solvation = -64.211080 kcal Electronic energy + Delta-G solvation = -30207.363848 eV Core-core repulsion = 26098.125712 eV Total energy + Delta-G solvation = -4109.238135 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.67830 -41.17897 -39.97551 -38.77798 -38.34165 -36.37665 -34.92743 -32.35159 -31.69324 -31.04353 -30.12304 -28.82075 -27.67159 -27.49463 -25.95491 -23.76652 -23.04893 -22.59521 -21.16478 -19.83102 -19.52230 -19.26759 -18.61839 -18.32814 -17.58707 -17.33407 -16.91974 -16.73822 -16.48108 -16.40948 -15.93830 -15.70802 -15.40569 -15.31400 -14.85693 -14.48497 -14.37799 -14.30601 -14.21491 -13.86140 -13.74384 -13.48177 -13.17379 -12.97939 -12.86133 -12.74629 -12.70079 -12.61818 -12.52985 -12.34068 -11.90441 -11.85699 -11.56006 -11.40985 -11.31389 -10.69820 -10.57081 -10.53163 -10.45735 -9.93095 -9.75206 -8.22797 -6.33296 1.12926 1.37988 1.38845 1.40506 1.41609 1.48456 1.52082 2.00368 2.39756 2.56644 3.08229 3.11702 3.14285 3.27994 3.28130 3.46150 3.56090 3.62828 3.94482 4.03873 4.09268 4.18736 4.24137 4.30409 4.36626 4.40577 4.44996 4.45939 4.49068 4.59277 4.64123 4.66689 4.74866 4.85430 4.87342 5.01167 5.08391 5.10757 5.42199 5.45946 5.56278 5.68215 5.81878 6.16936 6.30733 6.45627 6.70091 6.80039 6.96343 7.00650 7.35712 8.88355 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008438 B = 0.004405 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3317.335459 B = 6354.999081 C = 8744.731496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.957 3.043 4 H -0.282 1.282 5 H -0.265 1.265 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.029 3.971 10 C 0.129 3.871 11 N -0.586 5.586 12 C 0.476 3.524 13 O -0.580 6.580 14 C 0.059 3.941 15 O -0.366 6.366 16 C 0.079 3.921 17 C 0.105 3.895 18 C 0.100 3.900 19 N -0.635 5.635 20 C 0.553 3.447 21 O -0.570 6.570 22 C 0.025 3.975 23 H 0.111 0.889 24 C -0.136 4.136 25 C -0.145 4.145 26 C 0.147 3.853 27 N -0.537 5.537 28 C 0.104 3.896 29 H 0.264 0.736 30 H 0.017 0.983 31 H -0.020 1.020 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.149 0.851 35 H 0.113 0.887 36 H 0.136 0.864 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.076 0.924 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.207 0.793 45 H 0.099 0.901 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.889 -14.631 14.051 21.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.782 3.218 4 H -0.207 1.207 5 H -0.190 1.190 6 H -0.199 1.199 7 C -0.583 4.583 8 H 0.076 0.924 9 C -0.009 4.009 10 C 0.008 3.992 11 N -0.317 5.317 12 C 0.265 3.735 13 O -0.460 6.460 14 C -0.020 4.020 15 O -0.283 6.283 16 C 0.002 3.998 17 C 0.017 3.983 18 C -0.023 4.023 19 N -0.371 5.371 20 C 0.343 3.657 21 O -0.448 6.448 22 C -0.088 4.088 23 H 0.129 0.871 24 C -0.175 4.175 25 C -0.184 4.184 26 C -0.065 4.065 27 N -0.245 5.245 28 C -0.020 4.020 29 H 0.073 0.927 30 H 0.035 0.965 31 H -0.002 1.002 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.166 0.834 35 H 0.131 0.869 36 H 0.154 0.846 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.139 0.861 40 H 0.130 0.870 41 H 0.095 0.905 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.223 0.777 45 H 0.118 0.882 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.409 -14.752 13.552 20.511 hybrid contribution -0.041 1.634 -0.596 1.739 sum -4.450 -13.118 12.956 18.967 Atomic orbital electron populations 1.70059 1.07498 1.27813 1.51040 1.25785 0.95651 1.02734 0.94521 0.85628 0.78435 0.78737 0.79022 1.20692 1.19002 1.19944 1.21460 0.93431 0.92029 1.51371 0.92370 1.19193 0.94296 0.91920 0.95479 1.21483 0.94791 0.81855 1.01099 1.47740 1.54369 1.23178 1.06410 1.21985 0.79911 0.88124 0.83470 1.90747 1.59774 1.66226 1.29277 1.22861 1.00278 0.89841 0.89037 1.88172 1.90951 1.35695 1.13510 1.22895 0.95962 0.90387 0.90589 1.22889 0.97961 0.95486 0.81926 1.23809 0.96796 0.94538 0.87150 1.49797 1.42417 1.41431 1.03494 1.20310 0.81792 0.82412 0.81183 1.90673 1.36544 1.37282 1.80308 1.22902 0.93818 1.00588 0.91477 0.87096 1.23087 0.94132 1.01811 0.98450 1.22629 0.96634 1.05811 0.93292 1.27469 0.92040 0.87206 0.99812 1.72809 1.36070 1.15595 0.99976 1.23586 0.96701 1.01355 0.80344 0.92696 0.96466 1.00160 0.92848 0.90138 0.83391 0.86939 0.84622 0.88740 0.89093 0.86116 0.87037 0.90485 0.86794 0.86863 0.77683 0.88250 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.84 13.29 21.45 0.28 -53.56 16 2 C 0.01 0.67 5.46 84.66 0.46 1.13 16 3 Si 0.96 43.29 29.54 68.60 2.03 45.31 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.54 -29.79 9.11 25.60 0.23 -29.56 16 8 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 9 C 0.03 1.45 4.92 29.84 0.15 1.59 16 10 C 0.13 5.22 4.27 86.38 0.37 5.59 16 11 N -0.59 -19.10 2.67 -787.17 -2.10 -21.20 16 12 C 0.48 15.98 7.59 87.60 0.66 16.64 16 13 O -0.58 -25.35 16.55 -3.04 -0.05 -25.40 16 14 C 0.06 1.30 6.94 71.10 0.49 1.79 16 15 O -0.37 -7.49 10.84 -148.98 -1.62 -9.10 16 16 C 0.08 1.41 5.98 71.91 0.43 1.84 16 17 C 0.10 2.56 1.51 5.37 0.01 2.57 16 18 C 0.10 2.44 6.92 86.31 0.60 3.04 16 19 N -0.64 -16.25 3.49 -843.15 -2.94 -19.19 16 20 C 0.55 16.06 7.25 87.66 0.64 16.69 16 21 O -0.57 -21.33 17.31 -3.04 -0.05 -21.39 16 22 C 0.02 0.57 3.70 44.78 0.17 0.74 16 23 H 0.11 2.53 8.13 -2.39 -0.02 2.51 16 24 C -0.14 -1.90 6.78 31.80 0.22 -1.68 16 25 C -0.14 -1.33 6.90 30.65 0.21 -1.12 16 26 C 0.15 2.11 12.06 88.95 1.07 3.19 16 27 N -0.54 -13.31 10.62 -317.96 -3.38 -16.68 16 28 C 0.10 2.66 7.84 86.32 0.68 3.34 16 29 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 30 H 0.02 0.84 6.77 -2.39 -0.02 0.83 16 31 H -0.02 -1.18 8.14 -2.38 -0.02 -1.20 16 32 H 0.05 2.39 7.48 -2.38 -0.02 2.37 16 33 H 0.08 3.00 6.11 -2.39 -0.01 2.98 16 34 H 0.15 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.14 1.96 7.97 -2.39 -0.02 1.94 16 37 H 0.09 1.38 8.13 -2.38 -0.02 1.36 16 38 H 0.09 2.81 5.35 -2.39 -0.01 2.79 16 39 H 0.12 2.21 8.09 -2.38 -0.02 2.19 16 40 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.08 1.15 7.90 -2.39 -0.02 1.13 16 42 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.21 1.42 8.06 -2.91 -0.02 1.39 16 45 H 0.10 2.40 8.09 -2.38 -0.02 2.38 16 46 H 0.08 2.27 7.32 -2.39 -0.02 2.25 16 Total: -1.00 -82.20 377.15 -0.45 -82.64 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.99 Total: 12.79 kcal Atomic # 6 Polarization: 19.40 SS G_CDS: 6.38 Total: 25.78 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -8.13 Total: -110.64 kcal Atomic # 8 Polarization: -54.17 SS G_CDS: -1.72 Total: -55.89 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -82.20 -0.45 -82.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271516680.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.432 kcal (2) G-P(sol) polarization free energy of solvation -82.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds