Wall clock time and date at job start Tue Mar 31 2020 18:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99803 * 2 1 4 4 H 1.48498 * 109.47245 * 240.00476 * 3 2 1 5 5 H 1.48500 * 109.47138 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47288 * 120.00162 * 3 2 1 7 7 C 1.37875 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00066 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99806 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46849 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47184 * 179.97438 * 10 9 7 12 12 C 1.46294 * 118.72770 * 89.99476 * 11 10 9 13 13 C 1.52443 * 109.56553 * 164.05921 * 12 11 10 14 14 C 1.52854 * 114.32497 * 177.76582 * 13 12 11 15 15 N 1.47186 * 87.84396 * 88.30145 * 14 13 12 16 16 C 1.34775 * 135.99737 * 206.57892 * 15 14 13 17 17 O 1.21274 * 119.99799 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99826 * 180.02562 * 16 15 14 19 19 H 1.08998 * 110.36904 * 42.17881 * 18 16 15 20 20 C 1.54688 * 110.32365 * 279.99854 * 18 16 15 21 21 C 1.54824 * 100.83620 * 217.16848 * 20 18 16 22 22 C 1.51260 * 103.78594 * 23.50462 * 21 20 18 23 23 N 1.27271 * 111.24307 * 344.07998 * 22 21 20 24 24 C 1.47186 * 88.00528 * 26.83547 * 15 14 13 25 25 O 1.42545 * 112.73922 * 44.95165 * 13 12 11 26 26 C 1.43065 * 112.98197 * 296.21427 * 25 13 12 27 27 C 1.33711 * 118.73026 * 270.02197 * 11 10 9 28 28 O 1.21282 * 118.35273 * 3.33428 * 27 11 10 29 29 H 0.96998 * 120.00508 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46975 * 60.00288 * 9 7 2 31 31 H 1.08999 * 109.46832 * 299.99867 * 9 7 2 32 32 H 1.08996 * 109.47432 * 59.99646 * 10 9 7 33 33 H 1.09006 * 109.47224 * 299.99916 * 10 9 7 34 34 H 1.08996 * 109.45487 * 44.03288 * 12 11 10 35 35 H 1.08999 * 109.44220 * 284.08060 * 12 11 10 36 36 H 1.09007 * 113.48887 * 333.56081 * 14 13 12 37 37 H 1.08997 * 113.49078 * 203.05213 * 14 13 12 38 38 H 1.09002 * 111.15432 * 99.26067 * 20 18 16 39 39 H 1.09000 * 111.15265 * 335.07289 * 20 18 16 40 40 H 1.09003 * 110.56547 * 142.08233 * 21 20 18 41 41 H 1.09006 * 110.55962 * 264.93321 * 21 20 18 42 42 H 1.07997 * 124.37838 * 164.04067 * 22 21 20 43 43 H 1.08990 * 113.49128 * 87.91087 * 24 15 14 44 44 H 1.09003 * 113.48936 * 218.42591 * 24 15 14 45 45 H 1.08996 * 109.36554 * 286.89766 * 26 25 13 46 46 H 1.09004 * 109.21744 * 167.27128 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5129 -4.9308 0.0001 12 6 1.1608 -5.5401 -1.2825 13 6 0.7744 -6.9987 -1.0658 14 6 0.3329 -7.7282 -2.3344 15 7 1.7460 -8.0711 -2.5622 16 6 2.5151 -8.3515 -3.6329 17 8 2.0301 -8.3520 -4.7444 18 6 3.9775 -8.6653 -3.4487 19 1 4.1197 -9.3195 -2.5885 20 6 4.7889 -7.3603 -3.2711 21 6 6.0845 -7.7162 -4.0403 22 6 5.6482 -8.8027 -4.9980 23 7 4.5224 -9.2905 -4.6600 24 6 1.9493 -7.9800 -1.1073 25 8 -0.0968 -7.1782 0.0481 26 6 0.5078 -6.8182 1.2938 27 6 1.1916 -5.4869 1.1729 28 8 1.4665 -4.8859 2.1898 29 1 -0.4851 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6248 -2.5570 0.8897 32 1 2.8720 -3.6043 0.8894 33 1 2.8720 -3.6043 -0.8906 34 1 2.0159 -5.4873 -1.9563 35 1 0.3197 -5.0029 -1.7206 36 1 -0.0815 -7.0659 -3.0946 37 1 -0.2986 -8.5950 -2.1396 38 1 4.9968 -7.1665 -2.2188 39 1 4.2783 -6.5141 -3.7309 40 1 6.4552 -6.8495 -4.5876 41 1 6.8451 -8.0920 -3.3558 42 1 6.2181 -9.1226 -5.8578 43 1 1.7536 -8.9146 -0.5819 44 1 2.9027 -7.5306 -0.8292 45 1 1.2399 -7.5761 1.5726 46 1 -0.2624 -6.7600 2.0629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271517246.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:44 Heat of formation + Delta-G solvation = -29.871465 kcal Electronic energy + Delta-G solvation = -29703.765627 eV Core-core repulsion = 25596.016569 eV Total energy + Delta-G solvation = -4107.749058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.72244 -40.33932 -39.25223 -37.92650 -36.56236 -35.48695 -33.09775 -31.44091 -30.54802 -30.15134 -29.20765 -27.65234 -26.63089 -26.39625 -24.61745 -22.86529 -22.00306 -21.06042 -20.31547 -19.20833 -18.31216 -18.13353 -17.59003 -16.79048 -16.48185 -16.16618 -16.09403 -15.80150 -15.67358 -14.98824 -14.67873 -14.64506 -14.41142 -14.08049 -13.64862 -13.51437 -13.48394 -13.19478 -13.14006 -12.64410 -12.63229 -12.48555 -12.25184 -12.13026 -12.09160 -11.69515 -11.38944 -11.20608 -10.93474 -10.78224 -10.66834 -10.46667 -10.05291 -9.96864 -9.91538 -9.78607 -9.45966 -9.19589 -9.03899 -8.38984 -8.24412 -6.04015 -4.07844 1.70547 2.21052 2.34426 2.76632 3.06973 3.26851 3.31035 3.35829 3.38029 3.77219 3.83092 3.91691 4.03904 4.14150 4.39792 4.42924 4.52739 4.60060 4.65225 4.77420 4.90056 4.97135 5.00730 5.02389 5.23202 5.25748 5.30626 5.32090 5.32532 5.35203 5.38353 5.42638 5.55181 5.65712 5.86164 5.95904 6.39139 6.49614 6.68418 6.78370 7.14315 7.27385 7.50741 7.63968 7.82431 7.82740 7.94833 8.28299 8.39566 8.98228 9.56176 11.07374 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011037 B = 0.003251 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.278964 B = 8611.627163 C =10098.699400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.015 3.985 10 C 0.115 3.885 11 N -0.597 5.597 12 C 0.119 3.881 13 C 0.060 3.940 14 C 0.131 3.869 15 N -0.644 5.644 16 C 0.563 3.437 17 O -0.514 6.514 18 C 0.030 3.970 19 H 0.113 0.887 20 C -0.141 4.141 21 C -0.151 4.151 22 C 0.136 3.864 23 N -0.474 5.474 24 C 0.076 3.924 25 O -0.346 6.346 26 C 0.051 3.949 27 C 0.478 3.522 28 O -0.534 6.534 29 H 0.262 0.738 30 H 0.015 0.985 31 H 0.023 0.977 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.179 0.821 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.907 -21.059 -5.197 23.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.023 4.023 10 C -0.006 4.006 11 N -0.330 5.330 12 C -0.005 4.005 13 C 0.019 3.981 14 C 0.008 3.992 15 N -0.383 5.383 16 C 0.352 3.648 17 O -0.387 6.387 18 C -0.083 4.083 19 H 0.130 0.870 20 C -0.181 4.181 21 C -0.190 4.190 22 C -0.078 4.078 23 N -0.180 5.180 24 C -0.048 4.048 25 O -0.263 6.263 26 C -0.028 4.028 27 C 0.265 3.735 28 O -0.411 6.411 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.196 0.804 43 H 0.118 0.882 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.776 -21.446 -5.682 23.509 hybrid contribution 1.012 1.635 0.528 1.994 sum 8.788 -19.811 -5.154 22.277 Atomic orbital electron populations 1.69958 1.06106 1.26851 1.50172 1.24996 0.94847 0.99295 0.95085 0.86617 0.79560 0.82953 0.78627 1.20208 1.21235 1.20143 1.21026 0.92925 0.90700 1.51541 0.92608 1.19346 0.94333 0.90922 0.97724 1.21973 0.95522 0.81537 1.01526 1.47711 1.56372 1.24402 1.04516 1.21536 1.02296 0.89769 0.86914 1.22961 0.91693 0.94350 0.89109 1.22818 0.83931 0.99021 0.93450 1.49244 1.11624 1.70952 1.06463 1.19588 0.86844 0.75837 0.82545 1.90745 1.74255 1.50330 1.23382 1.22839 0.92566 0.96737 0.96125 0.86968 1.23047 0.95412 0.97035 1.02555 1.22580 0.98583 0.99699 0.98186 1.26830 0.92353 0.91940 0.96702 1.72812 1.10590 1.25031 1.09603 1.23740 1.00271 0.99782 0.80962 1.88089 1.37994 1.86370 1.13825 1.22856 0.99655 0.93065 0.87187 1.20636 0.80561 0.88304 0.84035 1.90781 1.53899 1.62073 1.34395 0.92838 0.96664 0.95845 0.90512 0.91804 0.89517 0.89528 0.88629 0.87912 0.88987 0.89728 0.88860 0.88719 0.80432 0.88248 0.89545 0.89522 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.01 0.38 5.29 -27.88 -0.15 0.23 16 10 C 0.11 2.30 5.20 -4.04 -0.02 2.28 16 11 N -0.60 -9.88 2.84 -174.73 -0.50 -10.37 16 12 C 0.12 1.54 5.86 -4.44 -0.03 1.52 16 13 C 0.06 0.62 1.30 -90.91 -0.12 0.51 16 14 C 0.13 1.26 8.04 -8.19 -0.07 1.19 16 15 N -0.64 -6.54 3.52 -185.06 -0.65 -7.20 16 16 C 0.56 6.99 7.29 -10.99 -0.08 6.91 16 17 O -0.51 -8.58 17.33 5.56 0.10 -8.49 16 18 C 0.03 0.29 3.78 -68.03 -0.26 0.03 16 19 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 20 C -0.14 -1.09 6.78 -24.88 -0.17 -1.26 16 21 C -0.15 -0.86 6.90 -26.65 -0.18 -1.04 16 22 C 0.14 0.95 12.07 -13.89 -0.17 0.78 16 23 N -0.47 -5.11 10.61 -52.26 -0.55 -5.67 16 24 C 0.08 0.62 7.28 -8.04 -0.06 0.56 16 25 O -0.35 -3.89 10.68 -35.23 -0.38 -4.27 16 26 C 0.05 0.59 6.71 35.74 0.24 0.83 16 27 C 0.48 7.97 7.57 -11.72 -0.09 7.88 16 28 O -0.53 -11.30 16.33 5.56 0.09 -11.21 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.64 7.29 -51.93 -0.38 1.26 16 33 H 0.06 1.16 7.97 -51.93 -0.41 0.74 16 34 H 0.09 1.03 7.84 -51.93 -0.41 0.63 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.10 0.95 8.11 -51.92 -0.42 0.53 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.78 7.90 -51.93 -0.41 0.37 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.18 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 0.64 8.12 -51.93 -0.42 0.22 16 45 H 0.09 0.73 7.99 -51.93 -0.41 0.32 16 46 H 0.13 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 384.83 15.07 5.80 5.80 Total: -1.00 -37.91 384.83 -8.99 -46.90 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -7.06 Total: -2.88 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -1.55 Total: 7.05 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.97 Total: -49.46 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.19 Total: -23.97 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.91 -8.99 -46.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271517246.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.032 kcal (2) G-P(sol) polarization free energy of solvation -37.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds