Wall clock time and date at job start Tue Mar 31 2020 18:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99803 * 2 1 4 4 H 1.48498 * 109.47245 * 240.00476 * 3 2 1 5 5 H 1.48500 * 109.47138 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47288 * 120.00162 * 3 2 1 7 7 C 1.37875 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00066 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99806 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46849 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47184 * 179.97438 * 10 9 7 12 12 C 1.46294 * 118.72770 * 89.99476 * 11 10 9 13 13 C 1.52443 * 109.56553 * 164.05921 * 12 11 10 14 14 C 1.52854 * 114.32497 * 177.76582 * 13 12 11 15 15 N 1.47186 * 87.84396 * 88.30145 * 14 13 12 16 16 C 1.34775 * 135.99737 * 206.57892 * 15 14 13 17 17 O 1.21274 * 119.99799 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99826 * 180.02562 * 16 15 14 19 19 H 1.08998 * 110.36904 * 42.17881 * 18 16 15 20 20 C 1.54688 * 110.32365 * 279.99854 * 18 16 15 21 21 C 1.54824 * 100.83620 * 217.16848 * 20 18 16 22 22 C 1.51260 * 103.78594 * 23.50462 * 21 20 18 23 23 N 1.27271 * 111.24307 * 344.07998 * 22 21 20 24 24 C 1.47186 * 88.00528 * 26.83547 * 15 14 13 25 25 O 1.42545 * 112.73922 * 44.95165 * 13 12 11 26 26 C 1.43065 * 112.98197 * 296.21427 * 25 13 12 27 27 C 1.33711 * 118.73026 * 270.02197 * 11 10 9 28 28 O 1.21282 * 118.35273 * 3.33428 * 27 11 10 29 29 H 0.96998 * 120.00508 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46975 * 60.00288 * 9 7 2 31 31 H 1.08999 * 109.46832 * 299.99867 * 9 7 2 32 32 H 1.08996 * 109.47432 * 59.99646 * 10 9 7 33 33 H 1.09006 * 109.47224 * 299.99916 * 10 9 7 34 34 H 1.08996 * 109.45487 * 44.03288 * 12 11 10 35 35 H 1.08999 * 109.44220 * 284.08060 * 12 11 10 36 36 H 1.09007 * 113.48887 * 333.56081 * 14 13 12 37 37 H 1.08997 * 113.49078 * 203.05213 * 14 13 12 38 38 H 1.09002 * 111.15432 * 99.26067 * 20 18 16 39 39 H 1.09000 * 111.15265 * 335.07289 * 20 18 16 40 40 H 1.09003 * 110.56547 * 142.08233 * 21 20 18 41 41 H 1.09006 * 110.55962 * 264.93321 * 21 20 18 42 42 H 1.07997 * 124.37838 * 164.04067 * 22 21 20 43 43 H 1.08990 * 113.49128 * 87.91087 * 24 15 14 44 44 H 1.09003 * 113.48936 * 218.42591 * 24 15 14 45 45 H 1.08996 * 109.36554 * 286.89766 * 26 25 13 46 46 H 1.09004 * 109.21744 * 167.27128 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5129 -4.9308 0.0001 12 6 1.1608 -5.5401 -1.2825 13 6 0.7744 -6.9987 -1.0658 14 6 0.3329 -7.7282 -2.3344 15 7 1.7460 -8.0711 -2.5622 16 6 2.5151 -8.3515 -3.6329 17 8 2.0301 -8.3520 -4.7444 18 6 3.9775 -8.6653 -3.4487 19 1 4.1197 -9.3195 -2.5885 20 6 4.7889 -7.3603 -3.2711 21 6 6.0845 -7.7162 -4.0403 22 6 5.6482 -8.8027 -4.9980 23 7 4.5224 -9.2905 -4.6600 24 6 1.9493 -7.9800 -1.1073 25 8 -0.0968 -7.1782 0.0481 26 6 0.5078 -6.8182 1.2938 27 6 1.1916 -5.4869 1.1729 28 8 1.4665 -4.8859 2.1898 29 1 -0.4851 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6248 -2.5570 0.8897 32 1 2.8720 -3.6043 0.8894 33 1 2.8720 -3.6043 -0.8906 34 1 2.0159 -5.4873 -1.9563 35 1 0.3197 -5.0029 -1.7206 36 1 -0.0815 -7.0659 -3.0946 37 1 -0.2986 -8.5950 -2.1396 38 1 4.9968 -7.1665 -2.2188 39 1 4.2783 -6.5141 -3.7309 40 1 6.4552 -6.8495 -4.5876 41 1 6.8451 -8.0920 -3.3558 42 1 6.2181 -9.1226 -5.8578 43 1 1.7536 -8.9146 -0.5819 44 1 2.9027 -7.5306 -0.8292 45 1 1.2399 -7.5761 1.5726 46 1 -0.2624 -6.7600 2.0629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271517246.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:43 Heat of formation + Delta-G solvation = -59.590558 kcal Electronic energy + Delta-G solvation = -29705.054344 eV Core-core repulsion = 25596.016569 eV Total energy + Delta-G solvation = -4109.037775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.65208 -41.24999 -40.24664 -38.86310 -37.52799 -36.98828 -35.13342 -32.37355 -31.96562 -31.09133 -29.98539 -28.81518 -27.73958 -27.18722 -26.35229 -23.91006 -23.19033 -22.25160 -21.11454 -20.06902 -19.31009 -19.11602 -18.75041 -18.43305 -17.47119 -17.29893 -16.97387 -16.87536 -16.70429 -16.45296 -15.89270 -15.52321 -15.46240 -15.28698 -14.79849 -14.60380 -14.41812 -14.27957 -14.21692 -14.12331 -13.87326 -13.40746 -13.26065 -13.18886 -12.83726 -12.82926 -12.76538 -12.63595 -12.57173 -12.19238 -11.91937 -11.84342 -11.53044 -11.42554 -11.22874 -10.70085 -10.60372 -10.55743 -10.49007 -9.95327 -9.75235 -8.24375 -6.37348 1.11134 1.37690 1.37977 1.42352 1.45606 1.50093 1.56292 1.86500 2.38910 2.40832 2.97149 3.09253 3.10602 3.19708 3.25550 3.51496 3.57116 3.79276 3.90065 3.99686 4.10459 4.18515 4.24325 4.27053 4.29496 4.36107 4.41003 4.49819 4.51255 4.55792 4.62135 4.65928 4.67221 4.82570 4.89641 4.98324 5.03943 5.10811 5.39436 5.41197 5.53620 5.66351 5.78662 6.13460 6.38444 6.43149 6.65886 6.78267 6.94807 7.04191 7.32586 8.87732 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011037 B = 0.003251 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.278964 B = 8611.627163 C =10098.699400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.260 1.260 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.025 3.975 10 C 0.131 3.869 11 N -0.598 5.598 12 C 0.117 3.883 13 C 0.062 3.938 14 C 0.128 3.872 15 N -0.643 5.643 16 C 0.557 3.443 17 O -0.570 6.570 18 C 0.033 3.967 19 H 0.129 0.871 20 C -0.142 4.142 21 C -0.147 4.147 22 C 0.150 3.850 23 N -0.532 5.532 24 C 0.089 3.911 25 O -0.346 6.346 26 C 0.063 3.937 27 C 0.470 3.530 28 O -0.587 6.587 29 H 0.264 0.736 30 H -0.007 1.007 31 H -0.024 1.024 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.123 0.877 38 H 0.110 0.890 39 H 0.062 0.938 40 H 0.104 0.896 41 H 0.119 0.881 42 H 0.207 0.793 43 H 0.131 0.869 44 H 0.101 0.899 45 H 0.131 0.869 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.327 -22.373 -4.999 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.184 1.184 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.086 0.914 9 C -0.013 4.013 10 C 0.009 3.991 11 N -0.330 5.330 12 C -0.006 4.006 13 C 0.020 3.980 14 C 0.005 3.995 15 N -0.380 5.380 16 C 0.348 3.652 17 O -0.448 6.448 18 C -0.080 4.080 19 H 0.147 0.853 20 C -0.181 4.181 21 C -0.186 4.186 22 C -0.063 4.063 23 N -0.239 5.239 24 C -0.034 4.034 25 O -0.263 6.263 26 C -0.016 4.016 27 C 0.259 3.741 28 O -0.468 6.468 29 H 0.073 0.927 30 H 0.011 0.989 31 H -0.006 1.006 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.141 0.859 38 H 0.128 0.872 39 H 0.081 0.919 40 H 0.122 0.878 41 H 0.137 0.863 42 H 0.223 0.777 43 H 0.149 0.851 44 H 0.119 0.881 45 H 0.149 0.851 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 10.203 -22.794 -5.478 25.567 hybrid contribution 0.207 2.061 0.448 2.119 sum 10.410 -20.733 -5.030 23.738 Atomic orbital electron populations 1.70114 1.08068 1.27961 1.51274 1.26036 0.95754 1.03669 0.94433 0.85431 0.78210 0.77603 0.79396 1.18442 1.21004 1.19259 1.21528 0.93771 0.91784 1.51157 0.91376 1.19156 0.94590 0.93328 0.94239 1.21498 0.94181 0.81444 1.01992 1.47705 1.55896 1.23209 1.06146 1.21670 1.02128 0.91476 0.85331 1.22801 0.93115 0.92824 0.89251 1.22927 0.84300 0.99523 0.92728 1.49260 1.11683 1.69817 1.07239 1.20223 0.88084 0.74875 0.82040 1.90706 1.75451 1.53061 1.25535 1.22878 0.90605 0.97850 0.96652 0.85309 1.23085 0.95887 0.95344 1.03775 1.22635 0.98012 0.99718 0.98191 1.27418 0.91218 0.90883 0.96801 1.72830 1.12611 1.27360 1.11108 1.23870 0.99717 1.00263 0.79524 1.88105 1.38424 1.85908 1.13878 1.22922 1.00564 0.90590 0.87505 1.21728 0.79603 0.89806 0.82956 1.90755 1.56029 1.63923 1.36080 0.92746 0.98894 1.00595 0.91768 0.89401 0.88249 0.91453 0.89685 0.85905 0.87193 0.91934 0.87760 0.86342 0.77701 0.85117 0.88099 0.85137 0.83994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.21 13.29 21.45 0.28 -57.92 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.97 44.42 29.54 68.60 2.03 46.44 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.54 -31.12 9.11 25.60 0.23 -30.88 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.02 1.34 5.29 29.85 0.16 1.50 16 10 C 0.13 5.34 5.20 86.38 0.45 5.79 16 11 N -0.60 -19.78 2.84 -825.71 -2.34 -22.12 16 12 C 0.12 2.99 5.86 86.23 0.51 3.50 16 13 C 0.06 1.15 1.30 -10.98 -0.01 1.14 16 14 C 0.13 2.30 8.04 83.32 0.67 2.97 16 15 N -0.64 -12.00 3.52 -858.70 -3.03 -15.02 16 16 C 0.56 13.52 7.29 87.66 0.64 14.16 16 17 O -0.57 -19.54 17.33 -3.01 -0.05 -19.59 16 18 C 0.03 0.58 3.78 44.76 0.17 0.75 16 19 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 20 C -0.14 -1.89 6.78 31.79 0.22 -1.68 16 21 C -0.15 -1.24 6.90 30.65 0.21 -1.03 16 22 C 0.15 1.78 12.07 88.95 1.07 2.85 16 23 N -0.53 -10.89 10.61 -317.82 -3.37 -14.26 16 24 C 0.09 1.13 7.28 83.42 0.61 1.74 16 25 O -0.35 -6.94 10.68 -148.98 -1.59 -8.53 16 26 C 0.06 1.28 6.71 71.07 0.48 1.75 16 27 C 0.47 15.45 7.57 87.65 0.66 16.12 16 28 O -0.59 -25.31 16.33 -3.04 -0.05 -25.36 16 29 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 30 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 31 H -0.02 -1.53 8.14 -2.39 -0.02 -1.55 16 32 H 0.06 2.79 7.29 -2.39 -0.02 2.78 16 33 H 0.09 3.13 7.97 -2.38 -0.02 3.12 16 34 H 0.10 2.29 7.84 -2.39 -0.02 2.27 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.08 1.72 8.11 -2.38 -0.02 1.70 16 37 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 1.10 7.90 -2.39 -0.02 1.09 16 40 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16 42 H 0.21 0.99 8.06 -2.91 -0.02 0.97 16 43 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.10 1.07 8.12 -2.39 -0.02 1.05 16 45 H 0.13 1.61 7.99 -2.39 -0.02 1.59 16 46 H 0.14 2.69 8.14 -2.38 -0.02 2.67 16 Total: -1.00 -88.26 384.83 -0.62 -88.88 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 0.98 Total: 8.39 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 6.52 Total: 19.09 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -8.45 Total: -109.32 kcal Atomic # 8 Polarization: -51.79 SS G_CDS: -1.69 Total: -53.48 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -88.26 -0.62 -88.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271517246.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.285 kcal (2) G-P(sol) polarization free energy of solvation -88.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds