Wall clock time and date at job start Tue Mar 31 2020 18:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00311 * 2 1 4 4 H 1.48499 * 109.47359 * 240.00359 * 3 2 1 5 5 H 1.48506 * 109.47088 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47308 * 119.99700 * 3 2 1 7 7 C 1.38819 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99963 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99526 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99829 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47230 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46868 * 180.02562 * 11 10 9 13 13 C 1.46508 * 119.99683 * 269.99482 * 12 11 10 14 14 C 1.52995 * 109.47413 * 274.86668 * 13 12 11 15 15 O 1.42900 * 109.46862 * 65.00061 * 14 13 12 16 16 C 1.34775 * 120.00333 * 90.00262 * 12 11 10 17 17 O 1.21592 * 119.99831 * 5.55629 * 16 12 11 18 18 C 1.47517 * 120.00189 * 185.55723 * 16 12 11 19 19 C 1.39912 * 120.69230 * 54.98822 * 18 16 12 20 20 C 1.38447 * 118.54464 * 179.97438 * 19 18 16 21 21 C 1.38398 * 119.62912 * 359.97438 * 20 19 18 22 22 N 1.32357 * 120.59791 * 0.02562 * 21 20 19 23 23 C 1.32033 * 122.19130 * 359.97112 * 22 21 20 24 24 O 1.35434 * 119.78893 * 180.02562 * 23 22 21 25 25 C 1.51544 * 109.52573 * 179.97438 * 21 20 19 26 26 C 1.54581 * 105.24654 * 17.26969 * 25 21 20 27 27 C 1.51276 * 130.45706 * 179.97438 * 20 19 18 28 28 H 0.96996 * 120.00013 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00206 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47066 * 59.99753 * 10 9 7 31 31 H 1.09008 * 109.46939 * 300.00177 * 10 9 7 32 32 H 1.09001 * 109.46825 * 59.99902 * 11 10 9 33 33 H 1.09000 * 109.47003 * 300.00127 * 11 10 9 34 34 H 1.08995 * 109.47059 * 34.86974 * 13 12 11 35 35 H 1.09000 * 109.46257 * 154.86696 * 13 12 11 36 36 H 1.08989 * 109.47335 * 185.00273 * 14 13 12 37 37 H 1.09005 * 109.46881 * 305.00665 * 14 13 12 38 38 H 0.96708 * 113.99920 * 179.97438 * 15 14 13 39 39 H 1.08004 * 120.73001 * 359.96154 * 19 18 16 40 40 H 0.96699 * 113.99509 * 270.02499 * 24 23 22 41 41 H 1.09003 * 110.29432 * 136.19604 * 25 21 20 42 42 H 1.09004 * 110.29280 * 258.22564 * 25 21 20 43 43 H 1.09009 * 110.89712 * 215.34329 * 26 25 21 44 44 H 1.09000 * 110.84621 * 91.72976 * 26 25 21 45 45 H 1.09003 * 110.31270 * 281.74436 * 27 20 19 46 46 H 1.09004 * 110.31313 * 43.81535 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 6 1.0637 -4.8198 -0.0021 12 7 1.7962 -6.0885 -0.0026 13 6 2.1623 -6.7224 -1.2717 14 6 0.9921 -7.5699 -1.7747 15 8 -0.1143 -6.7194 -2.0823 16 6 2.1332 -6.6726 1.1643 17 8 1.7431 -6.2012 2.2151 18 6 2.9754 -7.8837 1.1668 19 6 4.2194 -7.8899 0.5265 20 6 4.9734 -9.0506 0.5569 21 6 4.4850 -10.1667 1.2136 22 7 3.3046 -10.1339 1.8114 23 6 2.5463 -9.0530 1.8122 24 8 1.3464 -9.0733 2.4399 25 6 5.4875 -11.2979 1.1040 26 6 6.8175 -10.6242 0.6956 27 6 6.3318 -9.3545 -0.0354 28 1 -0.4850 0.8400 0.0004 29 1 0.3555 -2.3881 -0.0005 30 1 2.6853 -3.7150 0.8878 31 1 2.6840 -3.7142 -0.8922 32 1 0.4367 -4.7614 -0.8918 33 1 0.4374 -4.7626 0.8882 34 1 2.3967 -5.9533 -2.0076 35 1 3.0341 -7.3592 -1.1214 36 1 1.2945 -8.1112 -2.6711 37 1 0.7000 -8.2810 -1.0020 38 1 -0.8936 -7.1903 -2.4082 39 1 4.5834 -7.0085 0.0193 40 1 0.6118 -9.3501 1.8752 41 1 5.5980 -11.7996 2.0654 42 1 5.1726 -12.0096 0.3409 43 1 7.3871 -11.2649 0.0222 44 1 7.4065 -10.3637 1.5750 45 1 6.2443 -9.5434 -1.1054 46 1 7.0179 -8.5275 0.1473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272306879.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:43 Heat of formation + Delta-G solvation = -64.180636 kcal Electronic energy + Delta-G solvation = -29314.660998 eV Core-core repulsion = 25205.424183 eV Total energy + Delta-G solvation = -4109.236815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.46595 -39.66221 -38.20876 -37.20932 -35.58194 -35.53771 -34.37615 -33.19033 -31.41046 -29.53778 -29.45418 -28.24281 -27.26302 -24.36610 -23.89935 -23.21368 -22.55709 -21.55568 -21.16028 -19.36567 -18.74954 -17.87367 -17.45730 -17.12980 -17.02538 -16.37696 -16.10709 -15.87100 -15.15986 -14.65708 -14.57896 -14.33555 -13.99572 -13.60861 -13.55073 -13.44687 -13.42676 -13.16268 -13.10198 -12.87851 -12.74416 -12.40905 -12.31106 -11.94091 -11.72757 -11.68870 -11.36899 -11.19490 -10.89968 -10.86026 -10.60159 -10.33471 -10.12978 -10.09850 -9.97490 -9.70261 -9.48399 -8.92246 -8.81453 -8.50092 -6.87404 -5.70503 -2.99548 0.39838 0.74658 2.61477 2.85891 3.11162 3.21954 3.48239 3.52135 3.53658 3.93302 3.95142 4.04302 4.31939 4.39864 4.51096 4.53823 4.65888 4.75181 4.84032 4.90109 4.97435 5.07037 5.19020 5.24157 5.24542 5.30949 5.40963 5.46747 5.54136 5.55736 5.59930 5.67058 5.72082 5.82731 5.95582 6.04677 6.11135 6.27335 6.57816 6.78851 6.96716 7.19026 7.39339 7.50418 7.55179 7.74160 8.21254 8.47990 9.58663 10.15767 10.51083 11.52412 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014620 B = 0.002772 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.742982 B =10100.363908 C =10726.409538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.143 3.857 11 C 0.110 3.890 12 N -0.593 5.593 13 C 0.099 3.901 14 C 0.062 3.938 15 O -0.560 6.560 16 C 0.560 3.440 17 O -0.506 6.506 18 C -0.185 4.185 19 C -0.024 4.024 20 C -0.163 4.163 21 C 0.157 3.843 22 N -0.500 5.500 23 C 0.359 3.641 24 O -0.463 6.463 25 C -0.073 4.073 26 C -0.119 4.119 27 C -0.077 4.077 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.019 0.981 31 H 0.016 0.984 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.040 0.960 38 H 0.377 0.623 39 H 0.147 0.853 40 H 0.400 0.600 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.988 -28.485 -5.887 30.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.014 3.986 11 C -0.011 4.011 12 N -0.325 5.325 13 C -0.025 4.025 14 C -0.017 4.017 15 O -0.365 6.365 16 C 0.346 3.654 17 O -0.380 6.380 18 C -0.192 4.192 19 C -0.050 4.050 20 C -0.166 4.166 21 C 0.019 3.981 22 N -0.218 5.218 23 C 0.179 3.821 24 O -0.270 6.270 25 C -0.111 4.111 26 C -0.157 4.157 27 C -0.115 4.115 28 H 0.066 0.934 29 H 0.218 0.782 30 H 0.037 0.963 31 H 0.034 0.966 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.224 0.776 39 H 0.164 0.836 40 H 0.258 0.742 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.105 0.895 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.237 -28.132 -4.176 30.227 hybrid contribution -0.335 1.067 -0.917 1.446 sum 9.901 -27.066 -5.093 29.267 Atomic orbital electron populations 1.69652 1.05091 1.25749 1.57668 1.24747 0.95551 0.97665 1.03031 0.86243 0.78496 0.83483 0.77810 1.21297 1.21651 1.21267 1.19157 0.90938 0.84022 1.42803 0.91313 1.42183 1.05900 0.99691 1.89556 1.20909 0.93955 0.85939 0.97752 1.21790 0.94643 0.80528 1.04176 1.47730 1.56814 1.23424 1.04574 1.21897 0.95980 0.98084 0.86535 1.22612 0.88213 0.92569 0.98302 1.86611 1.24917 1.36822 1.88125 1.17857 0.80436 0.82915 0.84216 1.90875 1.52782 1.63483 1.30834 1.20988 0.98356 0.96755 1.03092 1.21115 0.91458 0.97813 0.94564 1.21381 0.98786 0.94420 1.01965 1.21795 0.89908 0.95575 0.90861 1.66294 1.06756 1.29522 1.19225 1.18757 0.87814 0.86850 0.88696 1.84839 1.14064 1.89026 1.39042 1.21136 0.91447 0.94911 1.03562 1.22379 0.96146 0.96177 1.00952 1.20970 0.91781 0.98685 1.00029 0.93450 0.78175 0.96327 0.96589 0.88916 0.89854 0.88796 0.88887 0.92796 0.94202 0.77590 0.83566 0.74216 0.89338 0.88811 0.89584 0.90362 0.89496 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.17 13.06 55.49 0.72 -28.44 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.24 -6.99 9.99 -15.06 -0.15 -7.15 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -19.70 5.60 -59.90 -0.34 -20.03 16 10 C 0.14 3.15 6.58 -4.04 -0.03 3.12 16 11 C 0.11 2.04 5.38 -4.04 -0.02 2.02 16 12 N -0.59 -8.77 2.46 -174.92 -0.43 -9.20 16 13 C 0.10 1.05 5.71 -4.04 -0.02 1.03 16 14 C 0.06 0.55 7.39 37.16 0.27 0.83 16 15 O -0.56 -6.00 12.05 -35.23 -0.42 -6.43 16 16 C 0.56 9.13 6.81 -12.48 -0.09 9.04 16 17 O -0.51 -10.69 16.37 3.69 0.06 -10.63 16 18 C -0.19 -2.42 4.92 -104.72 -0.51 -2.94 16 19 C -0.02 -0.25 7.63 -38.88 -0.30 -0.54 16 20 C -0.16 -1.41 6.14 -104.20 -0.64 -2.05 16 21 C 0.16 1.52 7.32 -81.89 -0.60 0.92 16 22 N -0.50 -6.17 10.36 -8.88 -0.09 -6.27 16 23 C 0.36 4.74 7.76 -16.70 -0.13 4.61 16 24 O -0.46 -6.11 12.81 -19.59 -0.25 -6.36 16 25 C -0.07 -0.43 6.78 -26.64 -0.18 -0.61 16 26 C -0.12 -0.50 7.10 -25.19 -0.18 -0.67 16 27 C -0.08 -0.41 6.76 -26.89 -0.18 -0.59 16 28 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 29 H 0.38 10.84 7.67 -40.82 -0.31 10.53 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.09 1.69 6.69 -51.93 -0.35 1.34 16 33 H 0.08 1.72 7.35 -51.93 -0.38 1.34 16 34 H 0.09 1.03 8.11 -51.93 -0.42 0.61 16 35 H 0.09 0.78 4.43 -51.93 -0.23 0.55 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.38 2.35 9.12 45.56 0.42 2.77 16 39 H 0.15 1.30 7.61 -52.48 -0.40 0.90 16 40 H 0.40 3.18 9.06 45.56 0.41 3.60 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.19 8.14 -51.92 -0.42 -0.23 16 44 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 382.93 15.07 5.77 5.77 Total: -1.00 -39.61 382.93 -7.89 -47.49 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.04 Total: 9.51 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -2.85 Total: 6.50 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: -0.13 Total: -63.94 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.61 Total: -23.42 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -39.61 -7.89 -47.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272306879.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.687 kcal (2) G-P(sol) polarization free energy of solvation -39.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds