Wall clock time and date at job start Tue Mar 31 2020 18:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 119.99882 * 2 1 4 4 H 1.48496 * 109.47174 * 269.99578 * 3 2 1 5 5 H 1.48502 * 109.47125 * 30.00092 * 3 2 1 6 6 H 1.48505 * 109.46708 * 149.99516 * 3 2 1 7 7 C 1.38950 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00240 * 0.02562 * 7 2 1 9 9 N 1.37097 * 120.00225 * 180.02562 * 7 2 1 10 10 C 1.34769 * 120.00527 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99914 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00371 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47148 * 179.97438 * 12 10 9 14 14 C 1.46903 * 111.00177 * 180.02562 * 13 12 10 15 15 C 1.52992 * 109.47578 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.46862 * 305.00661 * 15 14 13 17 17 O 1.42905 * 109.46980 * 64.99788 * 15 14 13 18 18 C 1.52997 * 109.47482 * 185.00096 * 15 14 13 19 19 N 1.46505 * 109.47212 * 179.97438 * 18 15 14 20 20 C 1.34771 * 119.99622 * 179.97438 * 19 18 15 21 21 O 1.21280 * 120.00597 * 0.02562 * 20 19 18 22 22 C 1.50701 * 119.99622 * 179.97438 * 20 19 18 23 23 C 1.50287 * 109.46876 * 300.01542 * 22 20 19 24 24 C 1.32266 * 121.59388 * 303.36744 * 23 22 20 25 25 C 1.45196 * 123.03703 * 0.93730 * 24 23 22 26 26 C 1.32937 * 125.20632 * 319.60858 * 25 24 23 27 27 C 1.45206 * 125.19270 * 359.97438 * 26 25 24 28 28 C 1.32289 * 123.02785 * 40.42589 * 27 26 25 29 29 H 0.96996 * 119.99806 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99601 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46907 * 60.00280 * 12 10 9 32 32 H 1.08993 * 109.47205 * 300.00122 * 12 10 9 33 33 H 1.00895 * 111.00123 * 303.95629 * 13 12 10 34 34 H 1.09001 * 109.46871 * 59.99686 * 14 13 12 35 35 H 1.09004 * 109.46883 * 300.00718 * 14 13 12 36 36 H 0.96696 * 114.00036 * 60.00352 * 17 15 14 37 37 H 1.09002 * 109.47153 * 59.99783 * 18 15 14 38 38 H 1.09001 * 109.46832 * 299.99974 * 18 15 14 39 39 H 0.96996 * 119.99606 * 0.02562 * 19 18 15 40 40 H 1.09002 * 109.46793 * 60.00758 * 22 20 19 41 41 H 1.07997 * 119.20595 * 123.32081 * 23 22 20 42 42 H 1.07998 * 118.47085 * 180.93995 * 24 23 22 43 43 H 1.08002 * 117.39928 * 139.58980 * 25 24 23 44 44 H 1.08002 * 117.40492 * 179.97438 * 26 25 24 45 45 H 1.08006 * 118.48245 * 220.41409 * 27 26 25 46 46 H 1.08000 * 119.20534 * 179.00407 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7002 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2034 0.0011 10 6 4.0538 -2.3704 0.0011 11 8 3.4474 -3.4209 0.0001 12 6 5.5608 -2.3704 0.0011 13 7 6.0504 -3.7555 0.0017 14 6 7.5189 -3.7947 0.0023 15 6 7.9903 -5.2502 0.0023 16 1 7.5411 -5.7775 0.8438 17 8 7.5959 -5.8786 -1.2190 18 6 9.5145 -5.2927 0.1287 19 7 9.9658 -6.6865 0.1293 20 6 11.2795 -6.9693 0.2312 21 8 12.0882 -6.0701 0.3228 22 6 11.7437 -8.4031 0.2324 23 6 11.1246 -9.1290 1.3935 24 6 11.2796 -8.7065 2.6372 25 6 12.0324 -7.5131 2.9798 26 6 13.1786 -7.1423 2.4177 27 6 13.8695 -7.8694 1.3676 28 6 13.2412 -8.4449 0.3557 29 1 -0.4850 0.8400 -0.0004 30 1 3.8648 -0.3633 0.0014 31 1 5.9240 -1.8566 0.8911 32 1 5.9241 -1.8566 -0.8888 33 1 5.6749 -4.2714 0.7832 34 1 7.8955 -3.2904 0.8923 35 1 7.8962 -3.2909 -0.8876 36 1 7.9597 -5.4609 -2.0116 37 1 9.8153 -4.8134 1.0603 38 1 9.9637 -4.7653 -0.7129 39 1 9.3191 -7.4056 0.0556 40 1 11.4424 -8.8832 -0.6987 41 1 10.5382 -10.0168 1.2079 42 1 10.8252 -9.2756 3.4347 43 1 11.6288 -6.8756 3.7526 44 1 13.6321 -6.2277 2.7701 45 1 14.9459 -7.9435 1.4149 46 1 13.8181 -8.9567 -0.4004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272434278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:00 Heat of formation + Delta-G solvation = -59.003943 kcal Electronic energy + Delta-G solvation = -27707.996567 eV Core-core repulsion = 23598.984230 eV Total energy + Delta-G solvation = -4109.012337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.77574 -38.78874 -38.21257 -37.29456 -35.07731 -34.52380 -33.85551 -32.74742 -32.64665 -31.67508 -30.34514 -27.72762 -26.53257 -24.78531 -23.92858 -23.14315 -22.01176 -21.30751 -19.42053 -19.10975 -18.37359 -17.93302 -17.58025 -17.29305 -16.72695 -16.42947 -15.79937 -15.58200 -15.36217 -15.07739 -14.77660 -14.67080 -14.55863 -14.11212 -13.83135 -13.57242 -13.36029 -13.22288 -12.87540 -12.69767 -12.66484 -12.42617 -12.30822 -12.13578 -11.93159 -11.71079 -11.29073 -11.21054 -11.15655 -10.60559 -10.59613 -10.37539 -10.12173 -9.97747 -9.62452 -9.58009 -9.34852 -8.60231 -8.55677 -8.20749 -8.15821 -6.31629 -3.83127 0.89725 1.63612 2.37545 2.81354 2.96231 3.01459 3.06231 3.14338 3.72812 3.92399 4.09526 4.25124 4.32804 4.40667 4.54045 4.59009 4.65379 4.72723 4.73499 4.81976 4.91905 4.94248 5.07739 5.18275 5.23100 5.27431 5.38484 5.44549 5.55196 5.59417 5.60232 5.76689 5.80854 5.91132 6.08399 6.13310 6.16123 6.38582 6.41820 6.50458 7.00019 7.24194 7.43471 7.56926 7.57833 7.99131 8.13941 8.59136 8.94446 9.41738 9.81997 10.81489 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028809 B = 0.001704 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.677806 B =16423.431122 C =16628.077276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.449 3.551 11 O -0.563 6.563 12 C 0.048 3.952 13 N -0.658 5.658 14 C 0.030 3.970 15 C 0.102 3.898 16 H 0.104 0.896 17 O -0.543 6.543 18 C 0.090 3.910 19 N -0.720 5.720 20 C 0.523 3.477 21 O -0.532 6.532 22 C -0.047 4.047 23 C -0.150 4.150 24 C -0.105 4.105 25 C -0.149 4.149 26 C -0.074 4.074 27 C -0.103 4.103 28 C -0.129 4.129 29 H 0.273 0.727 30 H 0.370 0.630 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.351 0.649 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.375 0.625 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.406 0.594 40 H 0.108 0.892 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.117 0.883 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.927 -14.806 2.660 32.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.444 6.444 12 C -0.085 4.085 13 N -0.291 5.291 14 C -0.101 4.101 15 C 0.041 3.959 16 H 0.122 0.878 17 O -0.347 6.347 18 C -0.035 4.035 19 N -0.372 5.372 20 C 0.309 3.691 21 O -0.408 6.408 22 C -0.069 4.069 23 C -0.168 4.168 24 C -0.123 4.123 25 C -0.167 4.167 26 C -0.092 4.092 27 C -0.121 4.121 28 C -0.147 4.147 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.171 0.829 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.222 0.778 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.241 0.759 40 H 0.126 0.874 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.135 0.865 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 28.495 -15.184 2.460 32.382 hybrid contribution 0.770 1.875 0.604 2.115 sum 29.265 -13.309 3.064 32.295 Atomic orbital electron populations 1.69621 1.05634 1.27491 1.49356 1.25043 0.95502 0.97975 0.97664 0.86664 0.79717 0.84036 0.78904 1.19587 1.20187 1.19573 1.19436 0.79237 0.96651 1.48074 0.86266 1.42204 1.07543 1.06138 1.67146 1.19682 0.88153 0.84588 0.84069 1.90576 1.69387 1.30905 1.53559 1.21723 0.95203 0.90331 1.01250 1.59960 1.04983 1.12557 1.51601 1.22582 0.89903 0.96110 1.01475 1.22088 0.91090 0.93557 0.89127 0.87793 1.86637 1.75556 1.57505 1.15014 1.22014 0.95102 0.83355 1.03008 1.45784 1.07643 1.08631 1.75113 1.20421 0.82150 0.90921 0.75624 1.90699 1.53260 1.48073 1.48764 1.19219 0.94467 0.93375 0.99804 1.22920 1.00159 1.01086 0.92620 1.21151 0.98336 0.96034 0.96812 1.21031 0.95922 0.97177 1.02615 1.21059 0.95301 0.97785 0.95006 1.21033 0.99457 0.96793 0.94841 1.22705 0.92676 1.00464 0.98840 0.91610 0.79709 0.93816 0.89478 0.82884 0.94421 0.90416 0.77812 0.90772 0.91116 0.75922 0.87401 0.85791 0.86270 0.87074 0.86971 0.86481 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.76 13.96 55.50 0.77 -24.99 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.33 27.74 -169.99 -4.72 14.62 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 7 C -0.31 -8.66 10.16 -14.93 -0.15 -8.81 16 8 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 9 N -0.59 -14.06 5.09 -10.97 -0.06 -14.12 16 10 C 0.45 10.18 7.82 -10.99 -0.09 10.10 16 11 O -0.56 -15.18 15.78 5.55 0.09 -15.10 16 12 C 0.05 0.77 6.17 -4.98 -0.03 0.74 16 13 N -0.66 -9.77 6.07 -115.06 -0.70 -10.46 16 14 C 0.03 0.31 5.32 -3.83 -0.02 0.29 16 15 C 0.10 0.91 3.23 -26.74 -0.09 0.82 16 16 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 17 O -0.54 -5.55 13.03 -35.23 -0.46 -6.01 16 18 C 0.09 0.74 5.34 -4.04 -0.02 0.72 16 19 N -0.72 -5.78 5.35 -60.29 -0.32 -6.11 16 20 C 0.52 4.98 5.49 -10.99 -0.06 4.92 16 21 O -0.53 -6.80 13.67 5.56 0.08 -6.72 16 22 C -0.05 -0.34 2.89 -94.46 -0.27 -0.61 16 23 C -0.15 -0.95 8.89 -36.44 -0.32 -1.27 16 24 C -0.11 -0.76 9.58 -38.75 -0.37 -1.13 16 25 C -0.15 -1.26 8.53 -38.65 -0.33 -1.59 16 26 C -0.07 -0.66 7.35 -38.65 -0.28 -0.94 16 27 C -0.10 -0.85 9.09 -38.74 -0.35 -1.20 16 28 C -0.13 -0.97 8.78 -36.42 -0.32 -1.29 16 29 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.37 7.70 5.76 -40.82 -0.24 7.47 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.35 5.48 8.43 -39.29 -0.33 5.15 16 34 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.37 2.85 9.05 45.56 0.41 3.26 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.41 2.79 8.23 -40.82 -0.34 2.46 16 40 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 43 H 0.11 0.88 8.06 -52.49 -0.42 0.45 16 44 H 0.11 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 46 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 LS Contribution 386.19 15.07 5.82 5.82 Total: -1.00 -36.03 386.19 -8.27 -44.30 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -5.97 Total: 17.00 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -2.81 Total: 1.76 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.30 Total: -55.67 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.30 Total: -27.83 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.72 Total: 14.62 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.03 -8.27 -44.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272434278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.708 kcal (2) G-P(sol) polarization free energy of solvation -36.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds