Wall clock time and date at job start Tue Mar 31 2020 18:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 119.99882 * 2 1 4 4 H 1.48496 * 109.47174 * 269.99578 * 3 2 1 5 5 H 1.48502 * 109.47125 * 30.00092 * 3 2 1 6 6 H 1.48505 * 109.46708 * 149.99516 * 3 2 1 7 7 C 1.38950 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00240 * 0.02562 * 7 2 1 9 9 N 1.37097 * 120.00225 * 180.02562 * 7 2 1 10 10 C 1.34769 * 120.00527 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99914 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00371 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47148 * 179.97438 * 12 10 9 14 14 C 1.46903 * 111.00177 * 180.02562 * 13 12 10 15 15 C 1.52992 * 109.47578 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.46862 * 305.00661 * 15 14 13 17 17 O 1.42905 * 109.46980 * 64.99788 * 15 14 13 18 18 C 1.52997 * 109.47482 * 185.00096 * 15 14 13 19 19 N 1.46505 * 109.47212 * 179.97438 * 18 15 14 20 20 C 1.34771 * 119.99622 * 179.97438 * 19 18 15 21 21 O 1.21280 * 120.00597 * 0.02562 * 20 19 18 22 22 C 1.50701 * 119.99622 * 179.97438 * 20 19 18 23 23 C 1.50287 * 109.46876 * 300.01542 * 22 20 19 24 24 C 1.32266 * 121.59388 * 303.36744 * 23 22 20 25 25 C 1.45196 * 123.03703 * 0.93730 * 24 23 22 26 26 C 1.32937 * 125.20632 * 319.60858 * 25 24 23 27 27 C 1.45206 * 125.19270 * 359.97438 * 26 25 24 28 28 C 1.32289 * 123.02785 * 40.42589 * 27 26 25 29 29 H 0.96996 * 119.99806 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99601 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46907 * 60.00280 * 12 10 9 32 32 H 1.08993 * 109.47205 * 300.00122 * 12 10 9 33 33 H 1.00895 * 111.00123 * 303.95629 * 13 12 10 34 34 H 1.09001 * 109.46871 * 59.99686 * 14 13 12 35 35 H 1.09004 * 109.46883 * 300.00718 * 14 13 12 36 36 H 0.96696 * 114.00036 * 60.00352 * 17 15 14 37 37 H 1.09002 * 109.47153 * 59.99783 * 18 15 14 38 38 H 1.09001 * 109.46832 * 299.99974 * 18 15 14 39 39 H 0.96996 * 119.99606 * 0.02562 * 19 18 15 40 40 H 1.09002 * 109.46793 * 60.00758 * 22 20 19 41 41 H 1.07997 * 119.20595 * 123.32081 * 23 22 20 42 42 H 1.07998 * 118.47085 * 180.93995 * 24 23 22 43 43 H 1.08002 * 117.39928 * 139.58980 * 25 24 23 44 44 H 1.08002 * 117.40492 * 179.97438 * 26 25 24 45 45 H 1.08006 * 118.48245 * 220.41409 * 27 26 25 46 46 H 1.08000 * 119.20534 * 179.00407 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7002 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2034 0.0011 10 6 4.0538 -2.3704 0.0011 11 8 3.4474 -3.4209 0.0001 12 6 5.5608 -2.3704 0.0011 13 7 6.0504 -3.7555 0.0017 14 6 7.5189 -3.7947 0.0023 15 6 7.9903 -5.2502 0.0023 16 1 7.5411 -5.7775 0.8438 17 8 7.5959 -5.8786 -1.2190 18 6 9.5145 -5.2927 0.1287 19 7 9.9658 -6.6865 0.1293 20 6 11.2795 -6.9693 0.2312 21 8 12.0882 -6.0701 0.3228 22 6 11.7437 -8.4031 0.2324 23 6 11.1246 -9.1290 1.3935 24 6 11.2796 -8.7065 2.6372 25 6 12.0324 -7.5131 2.9798 26 6 13.1786 -7.1423 2.4177 27 6 13.8695 -7.8694 1.3676 28 6 13.2412 -8.4449 0.3557 29 1 -0.4850 0.8400 -0.0004 30 1 3.8648 -0.3633 0.0014 31 1 5.9240 -1.8566 0.8911 32 1 5.9241 -1.8566 -0.8888 33 1 5.6749 -4.2714 0.7832 34 1 7.8955 -3.2904 0.8923 35 1 7.8962 -3.2909 -0.8876 36 1 7.9597 -5.4609 -2.0116 37 1 9.8153 -4.8134 1.0603 38 1 9.9637 -4.7653 -0.7129 39 1 9.3191 -7.4056 0.0556 40 1 11.4424 -8.8832 -0.6987 41 1 10.5382 -10.0168 1.2079 42 1 10.8252 -9.2756 3.4347 43 1 11.6288 -6.8756 3.7526 44 1 13.6321 -6.2277 2.7701 45 1 14.9459 -7.9435 1.4149 46 1 13.8181 -8.9567 -0.4004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272434278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:59 Heat of formation + Delta-G solvation = -90.423591 kcal Electronic energy + Delta-G solvation = -27709.359025 eV Core-core repulsion = 23598.984230 eV Total energy + Delta-G solvation = -4110.374795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.43466 -40.33419 -39.21032 -38.00916 -36.35226 -35.71026 -35.25354 -33.74888 -33.31886 -33.20394 -31.24788 -28.85530 -27.43498 -26.20116 -24.52590 -24.34454 -22.77412 -21.99487 -21.28966 -20.29738 -19.71111 -18.53868 -18.21376 -18.11794 -17.61890 -17.44052 -17.01352 -16.77609 -16.42933 -16.30467 -15.83567 -15.64972 -15.18682 -15.13602 -14.99501 -14.78342 -14.49074 -14.40633 -14.31553 -13.80316 -13.43638 -13.35889 -13.25200 -13.08704 -12.97217 -12.87407 -12.69064 -12.41412 -11.98248 -11.95122 -11.82902 -11.51694 -11.19142 -11.12081 -10.84611 -10.41996 -10.25064 -10.19331 -10.03714 -9.29894 -9.14340 -8.41454 -6.02559 0.33386 1.08557 1.30002 1.35887 1.44570 1.69438 1.95525 2.18618 2.22974 2.32663 2.74913 3.14722 3.33183 3.57729 3.77463 3.83135 3.87715 3.98297 4.07457 4.11890 4.14035 4.19897 4.21452 4.34520 4.41960 4.51108 4.53053 4.54600 4.69785 4.74627 4.79121 5.01063 5.04925 5.08234 5.45656 5.52318 5.55111 5.66372 5.82317 5.85965 5.89064 5.92482 6.02408 6.34138 6.59436 6.60028 6.87941 6.89233 7.31853 7.39527 7.96463 8.76206 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028809 B = 0.001704 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.677806 B =16423.431122 C =16628.077276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.966 3.034 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.231 1.231 7 C -0.330 4.330 8 H 0.054 0.946 9 N -0.591 5.591 10 C 0.447 3.553 11 O -0.614 6.614 12 C 0.062 3.938 13 N -0.679 5.679 14 C 0.032 3.968 15 C 0.114 3.886 16 H 0.100 0.900 17 O -0.559 6.559 18 C 0.099 3.901 19 N -0.712 5.712 20 C 0.520 3.480 21 O -0.569 6.569 22 C -0.051 4.051 23 C -0.140 4.140 24 C -0.123 4.123 25 C -0.155 4.155 26 C -0.089 4.089 27 C -0.122 4.122 28 C -0.132 4.132 29 H 0.279 0.721 30 H 0.390 0.610 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.343 0.657 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.386 0.614 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.413 0.587 40 H 0.133 0.867 41 H 0.150 0.850 42 H 0.133 0.867 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.128 0.872 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.646 -13.943 2.213 34.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.214 4.214 3 Si 0.786 3.214 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.154 1.154 7 C -0.459 4.459 8 H 0.073 0.927 9 N -0.233 5.233 10 C 0.235 3.765 11 O -0.499 6.499 12 C -0.070 4.070 13 N -0.311 5.311 14 C -0.097 4.097 15 C 0.054 3.946 16 H 0.117 0.883 17 O -0.366 6.366 18 C -0.026 4.026 19 N -0.364 5.364 20 C 0.307 3.693 21 O -0.447 6.447 22 C -0.072 4.072 23 C -0.158 4.158 24 C -0.140 4.140 25 C -0.174 4.174 26 C -0.107 4.107 27 C -0.140 4.140 28 C -0.150 4.150 29 H 0.089 0.911 30 H 0.226 0.774 31 H 0.095 0.905 32 H 0.133 0.867 33 H 0.162 0.838 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.235 0.765 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.249 0.751 40 H 0.151 0.849 41 H 0.167 0.833 42 H 0.151 0.849 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.146 0.854 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 31.239 -14.338 2.006 34.431 hybrid contribution -0.131 1.472 0.724 1.646 sum 31.108 -12.866 2.730 33.774 Atomic orbital electron populations 1.69807 1.08159 1.29256 1.50264 1.26136 0.96491 1.02763 0.96054 0.85348 0.79466 0.76635 0.79947 1.18150 1.20055 1.15399 1.19012 0.81572 0.94923 1.50416 0.92740 1.42032 1.05789 1.07633 1.67820 1.21031 0.91117 0.83273 0.81100 1.90553 1.71442 1.32829 1.55049 1.21642 0.89424 0.91918 1.04029 1.59960 1.07782 1.11744 1.51649 1.22665 0.86964 0.97170 1.02943 1.21941 0.91249 0.92797 0.88659 0.88255 1.86614 1.75986 1.58131 1.15867 1.21872 0.94396 0.83529 1.02769 1.45750 1.07504 1.08814 1.74368 1.20858 0.82068 0.91626 0.74784 1.90685 1.54190 1.49328 1.50540 1.19361 0.94390 0.92071 1.01382 1.23144 0.99427 1.01352 0.91856 1.21313 0.98937 0.95969 0.97817 1.21177 0.95951 0.97790 1.02437 1.21145 0.95816 0.97947 0.95825 1.21225 1.00236 0.97387 0.95131 1.23018 0.93172 0.99999 0.98818 0.91142 0.77449 0.90541 0.86706 0.83825 0.92675 0.88999 0.76548 0.91235 0.91050 0.75097 0.84927 0.83256 0.84918 0.87373 0.87818 0.85414 0.84198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.43 13.96 21.66 0.30 -56.12 16 2 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 3 Si 0.97 38.58 27.74 68.60 1.90 40.48 16 4 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.23 -7.68 6.52 99.48 0.65 -7.04 16 7 C -0.33 -19.39 10.16 84.04 0.85 -18.54 16 8 H 0.05 3.82 7.39 -2.91 -0.02 3.80 16 9 N -0.59 -27.73 5.09 -307.00 -1.56 -29.29 16 10 C 0.45 20.03 7.82 87.66 0.69 20.72 16 11 O -0.61 -34.22 15.78 -3.07 -0.05 -34.27 16 12 C 0.06 1.81 6.17 85.56 0.53 2.34 16 13 N -0.68 -18.71 6.07 -517.94 -3.15 -21.85 16 14 C 0.03 0.56 5.32 86.30 0.46 1.02 16 15 C 0.11 1.79 3.23 30.59 0.10 1.89 16 16 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 17 O -0.56 -10.40 13.03 -148.98 -1.94 -12.34 16 18 C 0.10 1.45 5.34 86.38 0.46 1.91 16 19 N -0.71 -10.21 5.35 -463.06 -2.48 -12.68 16 20 C 0.52 9.16 5.49 87.66 0.48 9.64 16 21 O -0.57 -14.16 13.67 -3.03 -0.04 -14.20 16 22 C -0.05 -0.62 2.89 -13.28 -0.04 -0.66 16 23 C -0.14 -1.45 8.89 24.50 0.22 -1.23 16 24 C -0.12 -1.59 9.58 23.00 0.22 -1.37 16 25 C -0.16 -2.60 8.53 22.89 0.20 -2.41 16 26 C -0.09 -1.62 7.35 22.89 0.17 -1.45 16 27 C -0.12 -1.94 9.09 23.00 0.21 -1.73 16 28 C -0.13 -1.79 8.78 24.50 0.22 -1.57 16 29 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 30 H 0.39 15.02 5.76 -92.70 -0.53 14.48 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.12 2.78 8.14 -2.39 -0.02 2.77 16 33 H 0.34 10.36 8.43 -89.70 -0.76 9.61 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.39 5.06 9.05 -74.06 -0.67 4.39 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.41 4.82 8.23 -92.71 -0.76 4.06 16 40 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.15 0.78 8.06 -2.91 -0.02 0.76 16 42 H 0.13 1.30 8.06 -2.91 -0.02 1.28 16 43 H 0.11 1.75 8.06 -2.91 -0.02 1.72 16 44 H 0.10 1.92 8.06 -2.91 -0.02 1.90 16 45 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16 46 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -84.08 386.19 -3.54 -87.62 By element: Atomic # 1 Polarization: 46.27 SS G_CDS: -1.75 Total: 44.52 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 5.22 Total: 8.14 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -6.88 Total: -119.95 kcal Atomic # 8 Polarization: -58.78 SS G_CDS: -2.03 Total: -60.81 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 1.90 Total: 40.48 kcal Total: -84.08 -3.54 -87.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272434278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.805 kcal (2) G-P(sol) polarization free energy of solvation -84.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds