Wall clock time and date at job start Tue Mar 31 2020 18:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99704 * 2 1 4 4 H 1.48501 * 109.47027 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47041 * 299.99652 * 3 2 1 6 6 H 1.48501 * 109.47312 * 59.99594 * 3 2 1 7 7 C 1.38945 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99924 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00246 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00071 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00405 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99867 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47194 * 180.02562 * 12 10 9 14 14 C 1.46902 * 110.99800 * 180.02562 * 13 12 10 15 15 C 1.53006 * 109.46626 * 180.02562 * 14 13 12 16 16 H 1.09001 * 109.46801 * 59.99937 * 15 14 13 17 17 O 1.42895 * 109.47036 * 299.99568 * 15 14 13 18 18 C 1.52999 * 109.46623 * 179.97438 * 15 14 13 19 19 N 1.46504 * 109.46822 * 184.99666 * 18 15 14 20 20 C 1.34773 * 119.99935 * 179.97438 * 19 18 15 21 21 O 1.21281 * 120.00498 * 0.02562 * 20 19 18 22 22 C 1.50706 * 120.00130 * 179.97438 * 20 19 18 23 23 C 1.50283 * 109.46885 * 300.01867 * 22 20 19 24 24 C 1.32266 * 121.59585 * 303.37011 * 23 22 20 25 25 C 1.45197 * 123.03521 * 0.92953 * 24 23 22 26 26 C 1.32939 * 125.20498 * 319.61721 * 25 24 23 27 27 C 1.45205 * 125.19467 * 359.97438 * 26 25 24 28 28 C 1.32289 * 123.02394 * 40.43765 * 27 26 25 29 29 H 0.96994 * 120.00398 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99821 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47213 * 60.00024 * 12 10 9 32 32 H 1.09001 * 109.47086 * 299.99779 * 12 10 9 33 33 H 1.00904 * 110.99696 * 56.04431 * 13 12 10 34 34 H 1.08993 * 109.47737 * 60.00169 * 14 13 12 35 35 H 1.09000 * 109.47263 * 299.99731 * 14 13 12 36 36 H 0.96695 * 114.00385 * 300.00682 * 17 15 14 37 37 H 1.08994 * 109.47465 * 305.00017 * 18 15 14 38 38 H 1.08998 * 109.47565 * 65.00449 * 18 15 14 39 39 H 0.96995 * 120.00028 * 0.02562 * 19 18 15 40 40 H 1.09006 * 109.46132 * 60.00609 * 22 20 19 41 41 H 1.08004 * 119.20631 * 123.31227 * 23 22 20 42 42 H 1.08001 * 118.47277 * 180.94321 * 24 23 22 43 43 H 1.08001 * 117.39618 * 139.59421 * 25 24 23 44 44 H 1.08006 * 117.40245 * 179.97438 * 26 25 24 45 45 H 1.08000 * 118.48599 * 220.41381 * 27 26 25 46 46 H 1.08003 * 119.20310 * 179.00149 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8892 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0016 10 6 1.9975 -3.5578 0.0016 11 8 3.2104 -3.5578 0.0011 12 6 1.2440 -4.8629 0.0022 13 7 2.1987 -5.9795 0.0027 14 6 1.4984 -7.2708 0.0026 15 6 2.5234 -8.4068 0.0038 16 1 3.1476 -8.3319 0.8943 17 8 3.3434 -8.3096 -1.1624 18 6 1.7940 -9.7517 0.0044 19 7 2.7708 -10.8368 0.1259 20 6 2.3548 -12.1185 0.1485 21 8 1.1719 -12.3737 0.0679 22 6 3.3596 -13.2348 0.2728 23 6 4.3126 -13.1825 -0.8880 24 6 3.8846 -13.2301 -2.1386 25 6 2.4787 -13.3155 -2.4914 26 6 1.5744 -14.0593 -1.8619 27 6 1.8418 -14.9109 -0.7166 28 6 2.6430 -14.5559 0.2744 29 1 -0.4850 0.8400 -0.0004 30 1 0.3535 -2.3907 0.0016 31 1 0.6170 -4.9209 -0.8876 32 1 0.6177 -4.9205 0.8925 33 1 2.8336 -5.9120 0.7840 34 1 0.8738 -7.3455 -0.8875 35 1 0.8732 -7.3451 0.8924 36 1 2.8533 -8.3683 -1.9939 37 1 1.1023 -9.7896 0.8459 38 1 1.2395 -9.8648 -0.9271 39 1 3.7168 -10.6328 0.1907 40 1 3.9148 -13.1217 1.2040 41 1 5.3726 -13.1033 -0.6965 42 1 4.6147 -13.2044 -2.9340 43 1 2.1407 -12.7277 -3.3320 44 1 0.5602 -14.0276 -2.2318 45 1 1.3644 -15.8786 -0.6716 46 1 2.7853 -15.2316 1.1048 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272434279.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:03 Heat of formation + Delta-G solvation = -66.054214 kcal Electronic energy + Delta-G solvation = -27684.457380 eV Core-core repulsion = 23575.139320 eV Total energy + Delta-G solvation = -4109.318060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.74203 -38.67267 -38.06109 -37.24733 -34.97123 -34.48363 -33.78544 -32.71300 -32.61430 -31.23898 -30.23578 -27.60603 -26.44133 -24.80068 -23.89768 -23.23119 -21.94797 -21.27039 -19.31336 -19.02991 -17.91090 -17.89163 -17.55056 -17.23411 -16.69791 -16.42896 -15.75979 -15.44740 -15.31695 -14.84344 -14.78511 -14.56973 -14.42556 -14.06828 -13.78290 -13.72303 -13.40705 -13.11531 -12.83505 -12.70007 -12.48338 -12.37145 -12.26529 -11.87277 -11.56017 -11.50527 -11.25456 -11.12713 -11.05371 -10.56185 -10.34554 -10.33505 -10.22812 -10.03588 -9.59145 -9.52142 -9.31601 -8.52508 -8.45928 -8.07045 -7.96042 -6.41961 -3.82786 0.93356 1.67201 2.40633 2.84643 3.00697 3.16366 3.26944 3.34422 3.90133 3.98417 4.21416 4.32343 4.36943 4.44420 4.58018 4.69761 4.70543 4.76745 4.80203 4.89231 4.95737 5.10953 5.12150 5.23955 5.30062 5.32461 5.44303 5.52935 5.58521 5.63767 5.76633 5.86533 5.94882 6.12127 6.16756 6.19428 6.25170 6.42083 6.45278 6.53821 7.13755 7.26947 7.52331 7.55400 7.66388 8.02169 8.06396 8.61084 9.17906 9.54098 10.05579 10.75882 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.036316 B = 0.001619 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.819666 B =17289.156879 C =17493.842619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.581 6.581 12 C 0.050 3.950 13 N -0.658 5.658 14 C 0.030 3.970 15 C 0.102 3.898 16 H 0.103 0.897 17 O -0.541 6.541 18 C 0.090 3.910 19 N -0.720 5.720 20 C 0.523 3.477 21 O -0.531 6.531 22 C -0.047 4.047 23 C -0.150 4.150 24 C -0.104 4.104 25 C -0.148 4.148 26 C -0.075 4.075 27 C -0.103 4.103 28 C -0.129 4.129 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.350 0.650 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.375 0.625 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.405 0.595 40 H 0.107 0.893 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.117 0.883 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.869 -29.622 -0.596 29.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.465 6.465 12 C -0.082 4.082 13 N -0.290 5.290 14 C -0.101 4.101 15 C 0.041 3.959 16 H 0.121 0.879 17 O -0.346 6.346 18 C -0.034 4.034 19 N -0.372 5.372 20 C 0.308 3.692 21 O -0.407 6.407 22 C -0.068 4.068 23 C -0.168 4.168 24 C -0.121 4.121 25 C -0.166 4.166 26 C -0.093 4.093 27 C -0.121 4.121 28 C -0.148 4.148 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.170 0.830 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.222 0.778 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.240 0.760 40 H 0.125 0.875 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.135 0.865 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.244 -29.546 -0.892 29.737 hybrid contribution -0.750 0.915 0.534 1.298 sum 2.494 -28.632 -0.358 28.742 Atomic orbital electron populations 1.69620 1.05942 1.28054 1.50746 1.25268 0.95644 0.99744 0.97353 0.85793 0.79719 0.81099 0.77689 1.19203 1.20743 1.20782 1.19764 0.93422 0.82219 1.47425 0.87841 1.41871 1.09193 1.04615 1.64450 1.19788 0.88395 0.84696 0.84504 1.90533 1.13721 1.87025 1.55225 1.21693 0.94322 0.91071 1.01160 1.59947 1.18368 0.99211 1.51520 1.22571 0.95735 0.90346 1.01471 1.22083 0.92512 0.90829 0.90460 0.87949 1.86623 1.36646 1.95960 1.15362 1.22031 0.91989 0.86522 1.02898 1.45803 1.10955 1.05294 1.75130 1.20428 0.89567 0.83411 0.75767 1.90700 1.17667 1.83516 1.48862 1.19212 0.95197 0.92681 0.99747 1.22897 0.99083 1.02536 0.92274 1.21138 0.95329 0.98927 0.96756 1.21032 0.92973 1.00464 1.02086 1.21054 0.98615 0.94985 0.94648 1.21030 0.97738 0.98873 0.94413 1.22694 0.96617 0.96484 0.98982 0.91932 0.77480 0.89627 0.93936 0.83029 0.90498 0.94472 0.77790 0.90724 0.91120 0.76044 0.87518 0.85850 0.86285 0.87049 0.86979 0.86509 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 9 N -0.56 -14.36 5.29 -10.96 -0.06 -14.42 16 10 C 0.44 10.44 7.82 -10.99 -0.09 10.35 16 11 O -0.58 -15.92 15.78 5.55 0.09 -15.83 16 12 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 13 N -0.66 -10.30 5.99 -115.05 -0.69 -10.99 16 14 C 0.03 0.32 5.35 -3.82 -0.02 0.30 16 15 C 0.10 0.96 3.20 -26.73 -0.09 0.87 16 16 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 17 O -0.54 -5.92 13.15 -35.23 -0.46 -6.38 16 18 C 0.09 0.79 5.31 -4.04 -0.02 0.77 16 19 N -0.72 -6.02 5.40 -60.29 -0.33 -6.35 16 20 C 0.52 5.13 5.49 -10.98 -0.06 5.07 16 21 O -0.53 -6.96 13.67 5.56 0.08 -6.89 16 22 C -0.05 -0.35 2.89 -94.47 -0.27 -0.62 16 23 C -0.15 -0.99 8.89 -36.44 -0.32 -1.32 16 24 C -0.10 -0.78 9.58 -38.75 -0.37 -1.15 16 25 C -0.15 -1.28 8.53 -38.65 -0.33 -1.61 16 26 C -0.08 -0.69 7.35 -38.65 -0.28 -0.97 16 27 C -0.10 -0.87 9.09 -38.74 -0.35 -1.22 16 28 C -0.13 -1.01 8.78 -36.43 -0.32 -1.33 16 29 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.39 9.51 7.90 -40.82 -0.32 9.18 16 31 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.35 5.75 8.43 -39.29 -0.33 5.42 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.37 3.23 9.05 45.56 0.41 3.64 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.40 2.87 8.36 -40.82 -0.34 2.53 16 40 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.12 0.57 8.06 -52.48 -0.42 0.15 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.11 0.91 8.06 -52.49 -0.42 0.48 16 44 H 0.11 1.00 8.06 -52.48 -0.42 0.58 16 45 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 LS Contribution 389.50 15.07 5.87 5.87 Total: -1.00 -34.78 389.50 -8.61 -43.39 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -6.01 Total: 17.44 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -2.80 Total: 1.94 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.35 Total: -55.63 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.30 Total: -29.10 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.78 -8.61 -43.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272434279.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.661 kcal (2) G-P(sol) polarization free energy of solvation -34.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds