Wall clock time and date at job start Tue Mar 31 2020 18:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99704 * 2 1 4 4 H 1.48501 * 109.47027 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47041 * 299.99652 * 3 2 1 6 6 H 1.48501 * 109.47312 * 59.99594 * 3 2 1 7 7 C 1.38945 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99924 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00246 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00071 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00405 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99867 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47194 * 180.02562 * 12 10 9 14 14 C 1.46902 * 110.99800 * 180.02562 * 13 12 10 15 15 C 1.53006 * 109.46626 * 180.02562 * 14 13 12 16 16 H 1.09001 * 109.46801 * 59.99937 * 15 14 13 17 17 O 1.42895 * 109.47036 * 299.99568 * 15 14 13 18 18 C 1.52999 * 109.46623 * 179.97438 * 15 14 13 19 19 N 1.46504 * 109.46822 * 184.99666 * 18 15 14 20 20 C 1.34773 * 119.99935 * 179.97438 * 19 18 15 21 21 O 1.21281 * 120.00498 * 0.02562 * 20 19 18 22 22 C 1.50706 * 120.00130 * 179.97438 * 20 19 18 23 23 C 1.50283 * 109.46885 * 300.01867 * 22 20 19 24 24 C 1.32266 * 121.59585 * 303.37011 * 23 22 20 25 25 C 1.45197 * 123.03521 * 0.92953 * 24 23 22 26 26 C 1.32939 * 125.20498 * 319.61721 * 25 24 23 27 27 C 1.45205 * 125.19467 * 359.97438 * 26 25 24 28 28 C 1.32289 * 123.02394 * 40.43765 * 27 26 25 29 29 H 0.96994 * 120.00398 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99821 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47213 * 60.00024 * 12 10 9 32 32 H 1.09001 * 109.47086 * 299.99779 * 12 10 9 33 33 H 1.00904 * 110.99696 * 56.04431 * 13 12 10 34 34 H 1.08993 * 109.47737 * 60.00169 * 14 13 12 35 35 H 1.09000 * 109.47263 * 299.99731 * 14 13 12 36 36 H 0.96695 * 114.00385 * 300.00682 * 17 15 14 37 37 H 1.08994 * 109.47465 * 305.00017 * 18 15 14 38 38 H 1.08998 * 109.47565 * 65.00449 * 18 15 14 39 39 H 0.96995 * 120.00028 * 0.02562 * 19 18 15 40 40 H 1.09006 * 109.46132 * 60.00609 * 22 20 19 41 41 H 1.08004 * 119.20631 * 123.31227 * 23 22 20 42 42 H 1.08001 * 118.47277 * 180.94321 * 24 23 22 43 43 H 1.08001 * 117.39618 * 139.59421 * 25 24 23 44 44 H 1.08006 * 117.40245 * 179.97438 * 26 25 24 45 45 H 1.08000 * 118.48599 * 220.41381 * 27 26 25 46 46 H 1.08003 * 119.20310 * 179.00149 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8892 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0016 10 6 1.9975 -3.5578 0.0016 11 8 3.2104 -3.5578 0.0011 12 6 1.2440 -4.8629 0.0022 13 7 2.1987 -5.9795 0.0027 14 6 1.4984 -7.2708 0.0026 15 6 2.5234 -8.4068 0.0038 16 1 3.1476 -8.3319 0.8943 17 8 3.3434 -8.3096 -1.1624 18 6 1.7940 -9.7517 0.0044 19 7 2.7708 -10.8368 0.1259 20 6 2.3548 -12.1185 0.1485 21 8 1.1719 -12.3737 0.0679 22 6 3.3596 -13.2348 0.2728 23 6 4.3126 -13.1825 -0.8880 24 6 3.8846 -13.2301 -2.1386 25 6 2.4787 -13.3155 -2.4914 26 6 1.5744 -14.0593 -1.8619 27 6 1.8418 -14.9109 -0.7166 28 6 2.6430 -14.5559 0.2744 29 1 -0.4850 0.8400 -0.0004 30 1 0.3535 -2.3907 0.0016 31 1 0.6170 -4.9209 -0.8876 32 1 0.6177 -4.9205 0.8925 33 1 2.8336 -5.9120 0.7840 34 1 0.8738 -7.3455 -0.8875 35 1 0.8732 -7.3451 0.8924 36 1 2.8533 -8.3683 -1.9939 37 1 1.1023 -9.7896 0.8459 38 1 1.2395 -9.8648 -0.9271 39 1 3.7168 -10.6328 0.1907 40 1 3.9148 -13.1217 1.2040 41 1 5.3726 -13.1033 -0.6965 42 1 4.6147 -13.2044 -2.9340 43 1 2.1407 -12.7277 -3.3320 44 1 0.5602 -14.0276 -2.2318 45 1 1.3644 -15.8786 -0.6716 46 1 2.7853 -15.2316 1.1048 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272434279.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:02 Heat of formation + Delta-G solvation = -95.009960 kcal Electronic energy + Delta-G solvation = -27685.712995 eV Core-core repulsion = 23575.139320 eV Total energy + Delta-G solvation = -4110.573675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.43037 -40.19728 -39.18267 -38.00501 -36.31626 -35.66354 -35.26178 -33.32249 -33.25980 -33.19491 -31.19928 -28.75367 -27.41114 -26.31019 -24.55890 -24.39188 -22.77519 -21.99552 -21.08969 -19.93338 -19.69831 -18.52949 -18.24909 -18.08056 -17.62715 -17.41799 -17.05454 -16.58662 -16.39539 -16.19381 -15.97803 -15.69061 -15.33425 -15.13301 -15.03459 -14.71871 -14.54193 -14.25452 -13.94666 -13.49302 -13.42456 -13.39098 -13.19939 -13.04694 -12.95591 -12.86672 -12.69442 -12.40910 -12.11428 -11.93610 -11.81927 -11.51734 -11.18187 -11.12489 -10.82014 -10.33101 -10.18687 -10.03897 -10.01819 -9.29575 -9.13057 -8.47235 -5.96047 0.34617 1.09643 1.36645 1.42012 1.56329 1.69709 2.04945 2.18506 2.29003 2.35421 2.91569 3.20070 3.43885 3.59433 3.78714 3.83245 3.88095 4.00656 4.06007 4.12787 4.16981 4.22072 4.32083 4.34313 4.45473 4.51707 4.55321 4.56382 4.70206 4.73984 4.80189 5.01985 5.05943 5.07461 5.40847 5.45911 5.56237 5.67440 5.83495 5.86324 5.87201 5.93415 6.08491 6.36879 6.59676 6.60050 6.87487 7.12410 7.32077 7.55909 8.11371 8.70368 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.036316 B = 0.001619 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.819666 B =17289.156879 C =17493.842619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.334 4.334 8 H 0.079 0.921 9 N -0.574 5.574 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.065 3.935 13 N -0.674 5.674 14 C 0.031 3.969 15 C 0.115 3.885 16 H 0.105 0.895 17 O -0.558 6.558 18 C 0.100 3.900 19 N -0.712 5.712 20 C 0.519 3.481 21 O -0.569 6.569 22 C -0.050 4.050 23 C -0.139 4.139 24 C -0.121 4.121 25 C -0.153 4.153 26 C -0.091 4.091 27 C -0.122 4.122 28 C -0.132 4.132 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.344 0.656 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.384 0.616 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.413 0.587 40 H 0.134 0.866 41 H 0.150 0.850 42 H 0.132 0.868 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.128 0.872 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.324 -30.159 -0.011 30.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.211 5.211 10 C 0.224 3.776 11 O -0.509 6.509 12 C -0.067 4.067 13 N -0.306 5.306 14 C -0.099 4.099 15 C 0.054 3.946 16 H 0.123 0.877 17 O -0.364 6.364 18 C -0.025 4.025 19 N -0.364 5.364 20 C 0.306 3.694 21 O -0.448 6.448 22 C -0.071 4.071 23 C -0.157 4.157 24 C -0.139 4.139 25 C -0.171 4.171 26 C -0.109 4.109 27 C -0.140 4.140 28 C -0.151 4.151 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.122 0.878 32 H 0.085 0.915 33 H 0.162 0.838 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.232 0.768 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.249 0.751 40 H 0.152 0.848 41 H 0.167 0.833 42 H 0.150 0.850 43 H 0.126 0.874 44 H 0.121 0.879 45 H 0.146 0.854 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.683 -30.095 -0.315 30.322 hybrid contribution -0.902 1.038 0.346 1.418 sum 2.781 -29.057 0.031 29.190 Atomic orbital electron populations 1.69676 1.06821 1.29246 1.50414 1.26048 0.96560 1.02437 0.96276 0.84860 0.78017 0.77054 0.78330 1.19813 1.19629 1.19541 1.19713 0.92719 0.84071 1.49860 0.90342 1.41944 1.09336 1.04736 1.65112 1.20910 0.88271 0.86220 0.82160 1.90499 1.15904 1.87963 1.56551 1.21546 0.93979 0.88126 1.03096 1.59939 1.18665 1.00443 1.51546 1.22661 0.96112 0.88444 1.02678 1.21954 0.91980 0.90485 0.90148 0.87738 1.86598 1.37592 1.95991 1.16213 1.21869 0.91857 0.86211 1.02587 1.45757 1.11317 1.04933 1.74403 1.20893 0.89528 0.84085 0.74905 1.90688 1.19356 1.84072 1.50649 1.19359 0.94899 0.91500 1.01389 1.23127 1.00135 1.00978 0.91503 1.21297 0.94796 1.00025 0.97779 1.21169 0.93874 1.00181 1.01907 1.21138 0.98451 0.95813 0.95488 1.21224 0.98686 0.99452 0.94595 1.23014 0.96011 0.96902 0.99134 0.91300 0.76965 0.87811 0.91536 0.83768 0.89535 0.92857 0.76757 0.90861 0.91616 0.75102 0.84836 0.83268 0.84988 0.87395 0.87898 0.85436 0.84169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.69 13.05 21.66 0.28 -49.41 16 2 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 3 Si 0.99 43.01 29.55 68.60 2.03 45.04 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 7 C -0.33 -19.08 9.68 84.04 0.81 -18.26 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.57 -29.49 5.29 -306.99 -1.62 -31.12 16 10 C 0.44 20.76 7.82 87.66 0.69 21.45 16 11 O -0.62 -34.76 15.78 -3.06 -0.05 -34.80 16 12 C 0.06 2.16 6.17 85.56 0.53 2.69 16 13 N -0.67 -20.13 5.99 -517.91 -3.10 -23.24 16 14 C 0.03 0.61 5.35 86.31 0.46 1.07 16 15 C 0.11 1.96 3.20 30.60 0.10 2.05 16 16 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 17 O -0.56 -11.38 13.15 -148.98 -1.96 -13.34 16 18 C 0.10 1.59 5.31 86.38 0.46 2.05 16 19 N -0.71 -10.76 5.40 -463.06 -2.50 -13.26 16 20 C 0.52 9.52 5.49 87.66 0.48 10.00 16 21 O -0.57 -14.69 13.67 -3.03 -0.04 -14.73 16 22 C -0.05 -0.64 2.89 -13.29 -0.04 -0.68 16 23 C -0.14 -1.52 8.89 24.50 0.22 -1.30 16 24 C -0.12 -1.66 9.58 23.01 0.22 -1.43 16 25 C -0.15 -2.67 8.53 22.89 0.20 -2.47 16 26 C -0.09 -1.71 7.35 22.89 0.17 -1.54 16 27 C -0.12 -2.01 9.09 23.00 0.21 -1.80 16 28 C -0.13 -1.86 8.78 24.49 0.21 -1.64 16 29 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 30 H 0.40 19.27 7.90 -92.71 -0.73 18.54 16 31 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.34 10.99 8.43 -89.69 -0.76 10.23 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.38 6.11 9.05 -74.06 -0.67 5.44 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.41 4.98 8.36 -92.71 -0.77 4.20 16 40 H 0.13 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 42 H 0.13 1.40 8.06 -2.91 -0.02 1.37 16 43 H 0.11 1.82 8.06 -2.91 -0.02 1.80 16 44 H 0.10 1.99 8.06 -2.91 -0.02 1.97 16 45 H 0.13 1.67 8.06 -2.91 -0.02 1.65 16 46 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -75.73 389.50 -3.69 -79.42 By element: Atomic # 1 Polarization: 47.41 SS G_CDS: -1.90 Total: 45.51 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 5.18 Total: 9.92 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -6.94 Total: -117.02 kcal Atomic # 8 Polarization: -60.82 SS G_CDS: -2.05 Total: -62.87 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -75.73 -3.69 -79.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272434279.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.594 kcal (2) G-P(sol) polarization free energy of solvation -75.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds