Wall clock time and date at job start Tue Mar 31 2020 19:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.07999 * 119.99964 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00047 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47267 * 179.97438 * 10 9 7 12 12 C 1.46203 * 118.77276 * 90.00185 * 11 10 9 13 13 C 1.52430 * 109.94768 * 162.45968 * 12 11 10 14 14 C 1.53763 * 110.34366 * 169.63803 * 13 12 11 15 15 C 1.54507 * 104.88648 * 119.00153 * 14 13 12 16 16 N 1.48602 * 104.61140 * 23.75776 * 15 14 13 17 17 C 1.46901 * 111.00105 * 201.22629 * 16 15 14 18 18 C 1.50701 * 109.46708 * 290.12310 * 17 16 15 19 19 C 1.41380 * 128.00687 * 269.67192 * 18 17 16 20 20 N 1.30173 * 106.39222 * 179.90010 * 19 18 17 21 21 O 1.20915 * 111.60812 * 0.39443 * 20 19 18 22 22 C 1.34041 * 111.56744 * 359.74139 * 21 20 19 23 23 C 1.48680 * 104.29380 * 320.82304 * 16 15 14 24 24 O 1.42564 * 110.13200 * 47.66581 * 13 12 11 25 25 C 1.43030 * 113.18034 * 293.28495 * 24 13 12 26 26 C 1.33848 * 118.77338 * 269.73212 * 11 10 9 27 27 O 1.21278 * 118.69557 * 2.43060 * 26 11 10 28 28 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 29 29 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 30 30 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 31 31 H 1.09004 * 109.47330 * 299.99977 * 10 9 7 32 32 H 1.09005 * 109.47124 * 59.99773 * 10 9 7 33 33 H 1.08997 * 109.38654 * 282.59973 * 12 11 10 34 34 H 1.08994 * 109.39058 * 42.40389 * 12 11 10 35 35 H 1.09001 * 110.35717 * 237.85239 * 14 13 12 36 36 H 1.09003 * 110.36026 * 0.03966 * 14 13 12 37 37 H 1.09000 * 110.40807 * 142.53517 * 15 14 13 38 38 H 1.08997 * 110.41082 * 264.85366 * 15 14 13 39 39 H 1.09002 * 109.47049 * 50.12314 * 17 16 15 40 40 H 1.08997 * 109.47213 * 170.12450 * 17 16 15 41 41 H 1.08000 * 126.80199 * 0.04477 * 19 18 17 42 42 H 1.07997 * 126.77783 * 179.97438 * 22 21 20 43 43 H 1.08997 * 110.42879 * 280.29606 * 23 16 15 44 44 H 1.09001 * 110.43343 * 157.79300 * 23 16 15 45 45 H 1.09006 * 109.40118 * 168.79728 * 25 24 13 46 46 H 1.09004 * 109.39993 * 288.61810 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 1.4646 -2.1294 0.0099 9 6 3.5116 -1.1941 0.0064 10 6 4.0215 -2.6366 0.0126 11 7 5.4865 -2.6366 0.0125 12 6 6.1903 -2.6311 1.2940 13 6 7.6381 -3.0638 1.0940 14 6 8.4517 -2.8167 2.3751 15 6 8.9531 -4.2143 2.8027 16 7 8.9460 -5.0144 1.5505 17 6 8.9062 -6.4530 1.8452 18 6 10.2236 -6.8807 2.4390 19 6 11.3711 -7.3535 1.7620 20 7 12.2634 -7.5977 2.6778 21 8 11.8416 -7.3587 3.7855 22 6 10.5803 -6.9068 3.7455 23 6 7.7114 -4.5807 0.8448 24 8 8.2148 -2.3568 -0.0014 25 6 7.6294 -2.6964 -1.2615 26 6 6.1308 -2.6472 -1.1607 27 8 5.4794 -2.6112 -2.1831 28 1 -0.4850 0.8401 -0.0041 29 1 3.8752 -0.6844 -0.8859 30 1 3.8746 -0.6762 0.8940 31 1 3.6579 -3.1467 0.9046 32 1 3.6585 -3.1541 -0.8754 33 1 6.1679 -1.6259 1.7148 34 1 5.6991 -3.3215 1.9796 35 1 9.2954 -2.1585 2.1675 36 1 7.8175 -2.3861 3.1500 37 1 9.9635 -4.1486 3.2061 38 1 8.2784 -4.6513 3.5389 39 1 8.1045 -6.6564 2.5551 40 1 8.7256 -7.0076 0.9244 41 1 11.4856 -7.4838 0.6960 42 1 9.9689 -6.6206 4.5885 43 1 6.8377 -5.0781 1.2660 44 1 7.7906 -4.7875 -0.2225 45 1 7.9671 -1.9899 -2.0198 46 1 7.9359 -3.7039 -1.5433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272709063.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:30 Heat of formation + Delta-G solvation = 11.378886 kcal Electronic energy + Delta-G solvation = -29450.244627 eV Core-core repulsion = 25344.284318 eV Total energy + Delta-G solvation = -4105.960309 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.31449 -41.23543 -39.10165 -37.19871 -35.64940 -34.75367 -33.10755 -32.67137 -31.53480 -30.65083 -29.19461 -28.17774 -27.09038 -25.18331 -24.66324 -23.43170 -22.25784 -21.65771 -21.20846 -20.45361 -18.61291 -18.20584 -17.91710 -17.77497 -17.11400 -16.60255 -16.16325 -15.79621 -15.51309 -15.43249 -15.03147 -14.65154 -14.50527 -14.09589 -13.83638 -13.60900 -13.53452 -13.19179 -13.08762 -12.78209 -12.62510 -12.57610 -12.29763 -12.01137 -11.85419 -11.67275 -11.59456 -11.53202 -11.15715 -10.96561 -10.70316 -10.53721 -10.28415 -10.07760 -9.93091 -9.86679 -9.37759 -9.11617 -8.96544 -8.57211 -8.33844 -6.08480 -4.07297 1.08071 1.84787 2.73478 2.84036 3.03494 3.30171 3.36869 3.40253 3.44536 3.51177 3.91742 4.11094 4.13653 4.27474 4.30945 4.42636 4.46451 4.64879 4.70064 4.80244 4.91893 4.98740 5.01802 5.09805 5.19591 5.25046 5.25805 5.26360 5.27911 5.35913 5.44276 5.52383 5.61932 5.64101 5.75024 5.89968 6.22586 6.26695 6.43182 6.50875 6.60088 6.79755 7.19142 7.29709 7.66230 7.74089 7.86189 8.32571 8.46175 8.94207 9.53596 11.04553 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024457 B = 0.002419 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.577485 B =11572.484508 C =11807.488163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.520 4.520 8 H 0.073 0.927 9 C -0.022 4.022 10 C 0.122 3.878 11 N -0.601 5.601 12 C 0.096 3.904 13 C 0.101 3.899 14 C -0.108 4.108 15 C 0.032 3.968 16 N -0.499 5.499 17 C 0.118 3.882 18 C -0.189 4.189 19 C 0.008 3.992 20 N -0.368 5.368 21 O 0.097 5.903 22 C -0.055 4.055 23 C 0.006 3.994 24 O -0.350 6.350 25 C 0.047 3.953 26 C 0.479 3.521 27 O -0.535 6.535 28 H 0.264 0.736 29 H 0.017 0.983 30 H 0.015 0.985 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.092 0.908 41 H 0.190 0.810 42 H 0.213 0.787 43 H 0.062 0.938 44 H 0.093 0.907 45 H 0.129 0.871 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.687 -13.476 9.106 27.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.558 4.558 8 H 0.091 0.909 9 C -0.060 4.060 10 C 0.002 3.998 11 N -0.334 5.334 12 C -0.028 4.028 13 C 0.060 3.940 14 C -0.146 4.146 15 C -0.096 4.096 16 N -0.223 5.223 17 C -0.011 4.011 18 C -0.194 4.194 19 C -0.171 4.171 20 N -0.071 5.071 21 O 0.032 5.968 22 C -0.138 4.138 23 C -0.122 4.122 24 O -0.269 6.269 25 C -0.032 4.032 26 C 0.265 3.735 27 O -0.413 6.413 28 H 0.074 0.926 29 H 0.036 0.964 30 H 0.033 0.967 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.207 0.793 42 H 0.230 0.770 43 H 0.081 0.919 44 H 0.111 0.889 45 H 0.147 0.853 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 24.089 -13.593 8.253 28.864 hybrid contribution -1.475 0.912 0.196 1.745 sum 22.613 -12.682 8.449 27.269 Atomic orbital electron populations 1.69906 1.06240 1.26972 1.50839 1.24979 0.94724 0.99141 0.94373 0.86763 0.80162 0.83564 0.78682 1.20201 1.21332 1.19198 1.20948 0.88890 0.94648 1.51350 0.90870 1.19832 0.97323 0.92144 0.96680 1.21744 0.75161 1.00590 1.02339 1.47764 1.08757 1.72051 1.04851 1.22095 0.90785 1.03125 0.86803 1.22104 0.92259 0.90621 0.88999 1.22275 1.00605 0.97626 0.94127 1.23225 1.01674 0.93019 0.91651 1.65464 1.35639 1.02996 1.18234 1.20464 0.90846 0.89393 1.00376 1.21197 0.98704 1.06680 0.92795 1.24980 0.89623 1.00900 1.01644 1.73900 1.23348 1.19075 0.90821 1.84832 1.25504 1.60912 1.25556 1.25848 0.86880 1.01438 0.99610 1.23787 0.91936 0.95126 1.01327 1.88125 1.60079 1.64695 1.13969 1.22876 0.88973 1.03763 0.87584 1.20820 0.91160 0.77557 0.83957 1.90772 1.67270 1.49433 1.33790 0.92649 0.96425 0.96711 0.91183 0.90048 0.90254 0.89677 0.88784 0.89292 0.89577 0.93146 0.92721 0.88989 0.79317 0.77006 0.91945 0.88883 0.85311 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.02 -0.52 4.36 -27.89 -0.12 -0.64 16 10 C 0.12 2.41 5.23 -4.05 -0.02 2.39 16 11 N -0.60 -9.78 2.80 -174.72 -0.49 -10.27 16 12 C 0.10 1.15 5.13 -4.49 -0.02 1.13 16 13 C 0.10 1.02 1.04 -90.05 -0.09 0.92 16 14 C -0.11 -0.83 6.44 -25.54 -0.16 -0.99 16 15 C 0.03 0.20 5.77 -2.09 -0.01 0.19 16 16 N -0.50 -3.83 5.36 -231.50 -1.24 -5.07 16 17 C 0.12 0.72 5.40 -4.97 -0.03 0.69 16 18 C -0.19 -1.26 5.41 -104.42 -0.56 -1.82 16 19 C 0.01 0.06 12.16 -17.06 -0.21 -0.15 16 20 N -0.37 -3.55 12.07 30.35 0.37 -3.18 16 21 O 0.10 0.79 11.20 17.18 0.19 0.98 16 22 C -0.06 -0.30 11.90 29.74 0.35 0.05 16 23 C 0.01 0.05 5.32 -2.37 -0.01 0.04 16 24 O -0.35 -4.29 10.32 -35.23 -0.36 -4.65 16 25 C 0.05 0.59 6.39 35.80 0.23 0.81 16 26 C 0.48 8.05 7.41 -11.60 -0.09 7.96 16 27 O -0.54 -11.35 16.37 5.56 0.09 -11.26 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.02 0.46 7.58 -51.93 -0.39 0.06 16 30 H 0.01 0.35 7.19 -51.93 -0.37 -0.02 16 31 H 0.07 1.25 7.95 -51.93 -0.41 0.83 16 32 H 0.08 1.75 7.29 -51.93 -0.38 1.37 16 33 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 34 H 0.09 0.85 7.69 -51.93 -0.40 0.45 16 35 H 0.09 0.79 7.97 -51.93 -0.41 0.37 16 36 H 0.09 0.56 7.68 -51.93 -0.40 0.16 16 37 H 0.09 0.54 8.04 -51.93 -0.42 0.12 16 38 H 0.05 0.25 7.82 -51.93 -0.41 -0.16 16 39 H 0.05 0.28 7.88 -51.93 -0.41 -0.13 16 40 H 0.09 0.53 8.13 -51.93 -0.42 0.11 16 41 H 0.19 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.21 0.39 8.06 -52.49 -0.42 -0.04 16 43 H 0.06 0.51 7.50 -51.93 -0.39 0.12 16 44 H 0.09 0.88 5.65 -51.93 -0.29 0.58 16 45 H 0.13 1.48 8.14 -51.93 -0.42 1.06 16 46 H 0.09 0.90 6.33 -51.93 -0.33 0.58 16 LS Contribution 370.71 15.07 5.59 5.59 Total: -1.00 -35.85 370.71 -7.65 -43.49 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -6.71 Total: -3.50 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -1.18 Total: -2.61 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -0.59 Total: -45.52 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.08 Total: -14.93 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.85 -7.65 -43.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272709063.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.873 kcal (2) G-P(sol) polarization free energy of solvation -35.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds