Wall clock time and date at job start Tue Mar 31 2020 19:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.07999 * 119.99964 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00047 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47267 * 179.97438 * 10 9 7 12 12 C 1.46203 * 118.77276 * 90.00185 * 11 10 9 13 13 C 1.52430 * 109.94768 * 162.45968 * 12 11 10 14 14 C 1.53763 * 110.34366 * 169.63803 * 13 12 11 15 15 C 1.54507 * 104.88648 * 119.00153 * 14 13 12 16 16 N 1.48602 * 104.61140 * 23.75776 * 15 14 13 17 17 C 1.46901 * 111.00105 * 201.22629 * 16 15 14 18 18 C 1.50701 * 109.46708 * 290.12310 * 17 16 15 19 19 C 1.41380 * 128.00687 * 269.67192 * 18 17 16 20 20 N 1.30173 * 106.39222 * 179.90010 * 19 18 17 21 21 O 1.20915 * 111.60812 * 0.39443 * 20 19 18 22 22 C 1.34041 * 111.56744 * 359.74139 * 21 20 19 23 23 C 1.48680 * 104.29380 * 320.82304 * 16 15 14 24 24 O 1.42564 * 110.13200 * 47.66581 * 13 12 11 25 25 C 1.43030 * 113.18034 * 293.28495 * 24 13 12 26 26 C 1.33848 * 118.77338 * 269.73212 * 11 10 9 27 27 O 1.21278 * 118.69557 * 2.43060 * 26 11 10 28 28 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 29 29 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 30 30 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 31 31 H 1.09004 * 109.47330 * 299.99977 * 10 9 7 32 32 H 1.09005 * 109.47124 * 59.99773 * 10 9 7 33 33 H 1.08997 * 109.38654 * 282.59973 * 12 11 10 34 34 H 1.08994 * 109.39058 * 42.40389 * 12 11 10 35 35 H 1.09001 * 110.35717 * 237.85239 * 14 13 12 36 36 H 1.09003 * 110.36026 * 0.03966 * 14 13 12 37 37 H 1.09000 * 110.40807 * 142.53517 * 15 14 13 38 38 H 1.08997 * 110.41082 * 264.85366 * 15 14 13 39 39 H 1.09002 * 109.47049 * 50.12314 * 17 16 15 40 40 H 1.08997 * 109.47213 * 170.12450 * 17 16 15 41 41 H 1.08000 * 126.80199 * 0.04477 * 19 18 17 42 42 H 1.07997 * 126.77783 * 179.97438 * 22 21 20 43 43 H 1.08997 * 110.42879 * 280.29606 * 23 16 15 44 44 H 1.09001 * 110.43343 * 157.79300 * 23 16 15 45 45 H 1.09006 * 109.40118 * 168.79728 * 25 24 13 46 46 H 1.09004 * 109.39993 * 288.61810 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 1.4646 -2.1294 0.0099 9 6 3.5116 -1.1941 0.0064 10 6 4.0215 -2.6366 0.0126 11 7 5.4865 -2.6366 0.0125 12 6 6.1903 -2.6311 1.2940 13 6 7.6381 -3.0638 1.0940 14 6 8.4517 -2.8167 2.3751 15 6 8.9531 -4.2143 2.8027 16 7 8.9460 -5.0144 1.5505 17 6 8.9062 -6.4530 1.8452 18 6 10.2236 -6.8807 2.4390 19 6 11.3711 -7.3535 1.7620 20 7 12.2634 -7.5977 2.6778 21 8 11.8416 -7.3587 3.7855 22 6 10.5803 -6.9068 3.7455 23 6 7.7114 -4.5807 0.8448 24 8 8.2148 -2.3568 -0.0014 25 6 7.6294 -2.6964 -1.2615 26 6 6.1308 -2.6472 -1.1607 27 8 5.4794 -2.6112 -2.1831 28 1 -0.4850 0.8401 -0.0041 29 1 3.8752 -0.6844 -0.8859 30 1 3.8746 -0.6762 0.8940 31 1 3.6579 -3.1467 0.9046 32 1 3.6585 -3.1541 -0.8754 33 1 6.1679 -1.6259 1.7148 34 1 5.6991 -3.3215 1.9796 35 1 9.2954 -2.1585 2.1675 36 1 7.8175 -2.3861 3.1500 37 1 9.9635 -4.1486 3.2061 38 1 8.2784 -4.6513 3.5389 39 1 8.1045 -6.6564 2.5551 40 1 8.7256 -7.0076 0.9244 41 1 11.4856 -7.4838 0.6960 42 1 9.9689 -6.6206 4.5885 43 1 6.8377 -5.0781 1.2660 44 1 7.7906 -4.7875 -0.2225 45 1 7.9671 -1.9899 -2.0198 46 1 7.9359 -3.7039 -1.5433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272709063.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:29 Heat of formation + Delta-G solvation = -15.663496 kcal Electronic energy + Delta-G solvation = -29451.417272 eV Core-core repulsion = 25344.284318 eV Total energy + Delta-G solvation = -4107.132954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.85699 -42.21741 -40.10630 -38.05167 -37.05193 -35.38457 -35.04834 -33.38039 -32.53828 -32.02025 -29.98527 -29.20504 -28.02779 -26.36258 -25.89318 -23.97480 -23.29676 -22.65311 -21.89954 -21.60205 -19.67823 -19.08768 -18.83515 -18.66323 -18.48098 -17.64303 -17.28146 -16.82906 -16.46920 -16.17053 -16.08676 -15.79801 -15.46130 -15.19049 -14.98248 -14.76804 -14.65861 -14.39266 -14.16074 -14.03382 -13.66251 -13.40461 -13.26536 -13.05347 -12.96651 -12.61551 -12.56490 -12.39113 -12.30798 -12.07783 -11.97765 -11.84008 -11.66967 -11.55240 -11.32282 -11.22704 -10.82264 -10.48363 -10.32219 -9.75191 -9.44693 -8.34515 -6.38739 0.63143 1.30319 1.32032 1.32378 1.42807 1.44732 1.83823 2.30680 2.44656 2.58238 2.94502 3.00583 3.28510 3.41422 3.48123 3.56580 3.75988 3.82302 4.00966 4.07873 4.15955 4.25450 4.28435 4.34480 4.39677 4.45820 4.50400 4.52853 4.63012 4.65826 4.73756 4.75356 4.82178 4.85202 4.88718 4.99372 5.05289 5.15771 5.18932 5.30988 5.41385 5.60285 5.70859 5.90276 5.99906 6.19547 6.39792 6.67406 7.02855 7.25976 7.36735 8.81625 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024457 B = 0.002419 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.577485 B =11572.484508 C =11807.488163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.010 3.990 3 Si 0.946 3.054 4 H -0.279 1.279 5 H -0.276 1.276 6 H -0.248 1.248 7 C -0.529 4.529 8 H 0.041 0.959 9 C -0.012 4.012 10 C 0.134 3.866 11 N -0.600 5.600 12 C 0.089 3.911 13 C 0.098 3.902 14 C -0.105 4.105 15 C 0.035 3.965 16 N -0.512 5.512 17 C 0.121 3.879 18 C -0.199 4.199 19 C -0.003 4.003 20 N -0.403 5.403 21 O 0.083 5.917 22 C -0.039 4.039 23 C 0.011 3.989 24 O -0.359 6.359 25 C 0.059 3.941 26 C 0.472 3.528 27 O -0.589 6.589 28 H 0.268 0.732 29 H -0.004 1.004 30 H 0.027 0.973 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.198 0.802 42 H 0.251 0.749 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.138 0.862 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.555 -13.359 11.204 30.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.188 4.188 3 Si 0.770 3.230 4 H -0.204 1.204 5 H -0.201 1.201 6 H -0.172 1.172 7 C -0.568 4.568 8 H 0.059 0.941 9 C -0.051 4.051 10 C 0.012 3.988 11 N -0.331 5.331 12 C -0.033 4.033 13 C 0.058 3.942 14 C -0.143 4.143 15 C -0.092 4.092 16 N -0.236 5.236 17 C -0.007 4.007 18 C -0.204 4.204 19 C -0.181 4.181 20 N -0.109 5.109 21 O 0.021 5.979 22 C -0.121 4.121 23 C -0.117 4.117 24 O -0.278 6.278 25 C -0.020 4.020 26 C 0.261 3.739 27 O -0.470 6.470 28 H 0.077 0.923 29 H 0.014 0.986 30 H 0.045 0.955 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.124 0.876 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.215 0.785 42 H 0.267 0.733 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.155 0.845 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 25.997 -13.492 10.406 31.083 hybrid contribution -2.111 0.807 -0.432 2.301 sum 23.886 -12.684 9.974 28.825 Atomic orbital electron populations 1.70039 1.07994 1.28210 1.52214 1.25904 0.95599 1.03176 0.94079 0.85722 0.79598 0.78915 0.78739 1.20434 1.20101 1.17195 1.21270 0.91252 0.93528 1.50713 0.94075 1.19690 0.94464 0.95033 0.95891 1.21332 0.77757 0.97557 1.02202 1.47777 1.07353 1.71356 1.06617 1.22447 0.91940 1.03934 0.84998 1.22287 0.91147 0.91374 0.89389 1.22322 1.00212 0.98557 0.93192 1.23268 1.02420 0.91999 0.91541 1.65436 1.34994 1.04012 1.19148 1.20464 0.90931 0.88419 1.00861 1.21286 0.98609 1.07334 0.93140 1.25320 0.90080 1.00582 1.02155 1.73902 1.24641 1.20874 0.91530 1.84791 1.26748 1.61216 1.25116 1.26547 0.85875 0.99253 1.00460 1.23680 0.92864 0.94080 1.01101 1.88133 1.59951 1.65445 1.14230 1.22824 0.85398 1.05470 0.88264 1.21689 0.92950 0.76078 0.83191 1.90746 1.68743 1.51902 1.35649 0.92328 0.98587 0.95517 0.88963 0.92650 0.90461 0.87091 0.89550 0.87581 0.89252 0.90849 0.90974 0.89080 0.78495 0.73263 0.91123 0.89844 0.84470 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.29 13.96 21.45 0.30 -59.00 16 2 C 0.01 0.60 5.47 84.66 0.46 1.06 16 3 Si 0.95 45.50 27.47 68.60 1.88 47.38 16 4 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 7 C -0.53 -30.72 9.66 25.60 0.25 -30.47 16 8 H 0.04 2.57 7.99 -2.91 -0.02 2.55 16 9 C -0.01 -0.60 4.36 29.85 0.13 -0.47 16 10 C 0.13 5.24 5.23 86.38 0.45 5.69 16 11 N -0.60 -18.71 2.80 -825.61 -2.31 -21.02 16 12 C 0.09 1.89 5.13 86.25 0.44 2.33 16 13 C 0.10 1.69 1.04 -10.42 -0.01 1.68 16 14 C -0.10 -1.23 6.44 31.36 0.20 -1.03 16 15 C 0.04 0.30 5.77 86.49 0.50 0.80 16 16 N -0.51 -6.15 5.36 -886.33 -4.75 -10.91 16 17 C 0.12 1.09 5.40 85.56 0.46 1.55 16 18 C -0.20 -2.13 5.41 -19.73 -0.11 -2.24 16 19 C 0.00 -0.04 12.16 85.71 1.04 1.00 16 20 N -0.40 -7.48 12.07 -59.27 -0.72 -8.19 16 21 O 0.08 1.24 11.20 71.64 0.80 2.04 16 22 C -0.04 -0.31 11.90 67.18 0.80 0.49 16 23 C 0.01 0.15 5.32 86.26 0.46 0.61 16 24 O -0.36 -7.95 10.32 -148.98 -1.54 -9.48 16 25 C 0.06 1.38 6.39 71.11 0.45 1.83 16 26 C 0.47 15.61 7.41 87.67 0.65 16.26 16 27 O -0.59 -25.49 16.37 -3.02 -0.05 -25.54 16 28 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 29 H 0.00 -0.23 7.58 -2.38 -0.02 -0.24 16 30 H 0.03 1.22 7.19 -2.39 -0.02 1.20 16 31 H 0.09 3.17 7.95 -2.38 -0.02 3.15 16 32 H 0.05 2.45 7.29 -2.38 -0.02 2.44 16 33 H 0.08 1.70 8.09 -2.39 -0.02 1.68 16 34 H 0.11 1.78 7.69 -2.39 -0.02 1.77 16 35 H 0.09 1.19 7.97 -2.39 -0.02 1.17 16 36 H 0.11 0.89 7.68 -2.39 -0.02 0.87 16 37 H 0.09 0.76 8.04 -2.39 -0.02 0.74 16 38 H 0.07 0.33 7.82 -2.39 -0.02 0.31 16 39 H 0.07 0.42 7.88 -2.39 -0.02 0.40 16 40 H 0.09 0.84 8.13 -2.39 -0.02 0.82 16 41 H 0.20 2.26 8.06 -2.91 -0.02 2.23 16 42 H 0.25 -0.26 8.06 -2.91 -0.02 -0.29 16 43 H 0.07 0.90 7.50 -2.39 -0.02 0.89 16 44 H 0.08 1.37 5.65 -2.39 -0.01 1.36 16 45 H 0.14 2.96 8.14 -2.38 -0.02 2.94 16 46 H 0.11 2.09 6.33 -2.39 -0.02 2.07 16 Total: -1.00 -80.52 370.71 0.74 -79.78 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 0.94 Total: 5.84 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: 6.18 Total: -0.90 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -7.48 Total: -99.12 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.78 Total: -32.99 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.88 Total: 47.38 kcal Total: -80.52 0.74 -79.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272709063.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.121 kcal (2) G-P(sol) polarization free energy of solvation -80.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds