Wall clock time and date at job start Tue Mar 31 2020 18:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00144 * 2 1 4 4 H 1.48499 * 109.47064 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47310 * 299.99934 * 3 2 1 6 6 H 1.48502 * 109.47149 * 60.00026 * 3 2 1 7 7 C 1.38810 * 119.99830 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00367 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99897 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99753 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.46780 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.51481 * 60.10109 * 11 10 9 13 13 C 1.53709 * 109.48398 * 180.36117 * 11 10 9 14 14 N 1.47156 * 108.16312 * 172.39619 * 13 11 10 15 15 C 1.34781 * 120.97826 * 129.43197 * 14 13 11 16 16 O 1.21576 * 120.00036 * 353.16817 * 15 14 13 17 17 C 1.47511 * 119.99651 * 173.44175 * 15 14 13 18 18 O 1.35187 * 127.15555 * 352.05624 * 17 15 14 19 19 N 1.21477 * 111.55321 * 179.74518 * 18 17 15 20 20 C 1.29067 * 111.68923 * 0.39585 * 19 18 17 21 21 C 1.35245 * 127.15532 * 172.37316 * 17 15 14 22 22 C 1.50115 * 131.33277 * 0.37760 * 21 17 15 23 23 C 1.53577 * 108.01565 * 163.70438 * 22 21 17 24 24 C 1.53008 * 109.80221 * 50.04360 * 23 22 21 25 25 C 1.50648 * 130.34176 * 180.12162 * 20 19 18 26 26 C 1.47148 * 118.03830 * 309.16141 * 14 13 11 27 27 C 1.53298 * 108.38430 * 50.78507 * 26 14 13 28 28 O 1.42963 * 109.21903 * 307.69650 * 27 26 14 29 29 H 0.97002 * 119.99856 * 359.97438 * 1 2 3 30 30 H 0.96993 * 120.00111 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.46914 * 60.00108 * 10 9 7 32 32 H 1.08992 * 109.46862 * 300.00067 * 10 9 7 33 33 H 1.09002 * 109.83653 * 52.72222 * 13 11 10 34 34 H 1.08999 * 109.74811 * 292.02634 * 13 11 10 35 35 H 1.08996 * 109.75281 * 283.33204 * 22 21 17 36 36 H 1.08992 * 109.75280 * 44.07726 * 22 21 17 37 37 H 1.08999 * 109.41693 * 289.94336 * 23 22 21 38 38 H 1.08999 * 109.41916 * 170.14309 * 23 22 21 39 39 H 1.08994 * 109.37811 * 168.09807 * 24 23 22 40 40 H 1.09003 * 109.38036 * 48.43256 * 24 23 22 41 41 H 1.09005 * 109.73915 * 282.82037 * 25 20 19 42 42 H 1.08994 * 109.74036 * 43.52847 * 25 20 19 43 43 H 1.09006 * 109.68518 * 170.50648 * 26 14 13 44 44 H 1.08999 * 109.68430 * 291.05983 * 26 14 13 45 45 H 1.09003 * 109.51400 * 67.62164 * 27 26 14 46 46 H 1.09000 * 109.51210 * 187.77605 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0017 11 6 1.0636 -4.8197 0.0021 12 1 0.4381 -4.7642 -0.8889 13 6 1.8318 -6.1510 0.0124 14 7 0.8596 -7.2401 0.1976 15 6 0.8487 -8.3076 -0.6251 16 8 1.5637 -8.3247 -1.6083 17 6 -0.0352 -9.4526 -0.3359 18 8 -0.7755 -9.6518 0.7776 19 7 -1.4043 -10.6893 0.7158 20 6 -1.1840 -11.3153 -0.3912 21 6 -0.2690 -10.5243 -1.1270 22 6 0.2650 -10.8926 -2.4808 23 6 -0.0158 -12.3847 -2.7123 24 6 -1.4851 -12.6883 -2.4121 25 6 -1.7371 -12.6210 -0.8998 26 6 -0.0962 -7.1321 1.3111 27 6 -0.7670 -5.7555 1.2407 28 8 0.2408 -4.7440 1.1687 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.6838 -3.7142 0.8922 32 1 2.6852 -3.7149 -0.8877 33 1 2.5503 -6.1571 0.8320 34 1 2.3540 -6.2823 -0.9353 35 1 -0.2346 -10.3005 -3.2474 36 1 1.3390 -10.7103 -2.5152 37 1 0.6187 -12.9790 -2.0548 38 1 0.2018 -12.6376 -3.7500 39 1 -1.7296 -13.6863 -2.7755 40 1 -2.1160 -11.9567 -2.9169 41 1 -1.2334 -13.4517 -0.4054 42 1 -2.8080 -12.6690 -0.7026 43 1 -0.8514 -7.9133 1.2238 44 1 0.4315 -7.2353 2.2592 45 1 -1.3992 -5.7034 0.3543 46 1 -1.3750 -5.6008 2.1321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273292446.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:55 Heat of formation + Delta-G solvation = 1.080818 kcal Electronic energy + Delta-G solvation = -29252.879517 eV Core-core repulsion = 25146.472651 eV Total energy + Delta-G solvation = -4106.406866 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.33071 -40.40614 -38.56146 -38.05239 -35.20304 -34.44777 -33.33251 -32.76998 -32.17896 -30.48105 -30.03555 -28.25070 -26.12484 -25.30736 -23.77400 -23.47650 -23.40122 -21.96051 -20.83920 -20.41967 -19.76117 -18.12197 -17.79305 -17.09519 -16.70726 -16.49904 -16.13195 -15.55920 -15.44393 -14.99162 -14.87620 -14.53501 -14.41076 -14.38507 -14.07089 -13.64682 -13.44429 -13.17255 -13.08526 -12.88636 -12.71508 -12.45390 -12.18700 -12.08308 -11.61807 -11.45403 -11.42285 -11.02929 -10.97476 -10.88784 -10.80229 -10.65065 -10.35307 -10.22878 -10.02151 -9.93354 -9.80477 -9.68496 -8.86077 -8.66860 -6.88035 -5.71775 -3.00518 0.50411 1.70672 2.20633 2.63972 2.81931 3.46566 3.47254 3.51826 3.54329 3.90188 3.95146 4.27454 4.34549 4.40922 4.52008 4.58082 4.71526 4.75370 4.88026 4.93696 4.99969 5.03108 5.08710 5.13347 5.26318 5.30279 5.35993 5.47186 5.50275 5.54675 5.60630 5.61342 5.65713 5.71567 5.79578 5.81908 5.84204 5.91111 6.14751 6.27358 6.54857 6.68452 6.93531 7.43562 7.56315 7.73537 7.80755 8.46310 9.58179 10.15247 10.51136 11.51069 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028381 B = 0.002244 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.326620 B =12474.346169 C =12909.010589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.163 3.837 11 C 0.073 3.927 12 H 0.065 0.935 13 C 0.086 3.914 14 N -0.599 5.599 15 C 0.606 3.394 16 O -0.510 6.510 17 C -0.078 4.078 18 O 0.098 5.902 19 N -0.336 5.336 20 C 0.019 3.981 21 C -0.118 4.118 22 C -0.051 4.051 23 C -0.121 4.121 24 C -0.120 4.120 25 C -0.041 4.041 26 C 0.063 3.937 27 C 0.048 3.952 28 O -0.355 6.355 29 H 0.254 0.746 30 H 0.388 0.612 31 H 0.029 0.971 32 H 0.037 0.963 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.054 0.946 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.244 -29.114 -2.199 29.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.370 5.370 10 C 0.035 3.965 11 C 0.014 3.986 12 H 0.083 0.917 13 C -0.036 4.036 14 N -0.332 5.332 15 C 0.391 3.609 16 O -0.386 6.386 17 C -0.141 4.141 18 O 0.031 5.969 19 N -0.041 5.041 20 C -0.142 4.142 21 C -0.123 4.123 22 C -0.089 4.089 23 C -0.159 4.159 24 C -0.158 4.158 25 C -0.079 4.079 26 C -0.060 4.060 27 C -0.030 4.030 28 O -0.272 6.272 29 H 0.064 0.936 30 H 0.222 0.778 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.120 0.880 44 H 0.104 0.896 45 H 0.072 0.928 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.424 -29.078 -1.519 29.318 hybrid contribution 0.301 0.730 -0.564 0.971 sum -3.123 -28.348 -2.084 28.595 Atomic orbital electron populations 1.69687 1.05116 1.25446 1.57744 1.24750 0.95533 0.97693 1.03071 0.86106 0.78767 0.84111 0.77136 1.20542 1.21920 1.21892 1.19270 0.91043 0.84056 1.42588 0.91067 1.42218 1.06085 0.99432 1.89314 1.20626 0.92318 0.84674 0.98868 1.22896 0.93000 0.93974 0.88708 0.91678 1.22587 0.91133 0.85255 1.04633 1.48053 1.34960 1.20081 1.30114 1.16589 0.81135 0.80233 0.82907 1.90851 1.41630 1.79482 1.26628 1.23366 1.01305 0.99747 0.89703 1.85362 1.44417 1.31005 1.36095 1.73420 1.13872 0.96136 1.20645 1.23413 0.99141 1.00433 0.91200 1.21136 0.98599 0.92956 0.99581 1.20157 1.02335 0.96282 0.90094 1.21677 0.96367 0.95338 1.02508 1.21635 0.97187 1.02807 0.94171 1.20147 1.01446 0.90230 0.96042 1.22894 0.93004 1.00225 0.89890 1.22921 0.90838 0.86156 1.03106 1.88182 1.45926 1.50474 1.42660 0.93613 0.77808 0.95287 0.94587 0.89668 0.87607 0.89323 0.88675 0.91392 0.90458 0.90332 0.91156 0.89234 0.89339 0.87981 0.89594 0.92757 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.87 5.50 -59.91 -0.33 -19.20 16 10 C 0.16 3.30 5.96 -4.04 -0.02 3.28 16 11 C 0.07 1.23 2.88 -26.37 -0.08 1.15 16 12 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 13 C 0.09 1.18 5.97 -3.32 -0.02 1.16 16 14 N -0.60 -7.73 3.01 -173.26 -0.52 -8.25 16 15 C 0.61 8.11 7.69 -12.48 -0.10 8.01 16 16 O -0.51 -7.82 15.36 5.30 0.08 -7.74 16 17 C -0.08 -0.92 6.86 -36.87 -0.25 -1.18 16 18 O 0.10 1.13 8.06 13.83 0.11 1.24 16 19 N -0.34 -3.88 12.03 33.15 0.40 -3.48 16 20 C 0.02 0.19 7.22 -82.51 -0.60 -0.41 16 21 C -0.12 -1.25 6.02 -104.70 -0.63 -1.88 16 22 C -0.05 -0.44 5.65 -27.87 -0.16 -0.59 16 23 C -0.12 -0.70 5.87 -26.43 -0.16 -0.85 16 24 C -0.12 -0.61 5.84 -26.49 -0.15 -0.76 16 25 C -0.04 -0.26 6.32 -27.67 -0.17 -0.43 16 26 C 0.06 0.70 6.30 -3.53 -0.02 0.68 16 27 C 0.05 0.62 6.99 37.31 0.26 0.88 16 28 O -0.35 -6.17 10.13 -35.23 -0.36 -6.52 16 29 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.39 10.75 7.54 -40.82 -0.31 10.44 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.11 1.46 7.06 -51.93 -0.37 1.09 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.89 7.67 -51.93 -0.40 0.49 16 37 H 0.07 0.39 8.11 -51.93 -0.42 -0.03 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 40 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.10 1.04 4.48 -51.98 -0.23 0.80 16 44 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 369.88 15.07 5.57 5.57 Total: -1.00 -33.82 369.88 -8.45 -42.27 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -6.77 Total: 4.82 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -2.34 Total: 1.60 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.27 Total: -58.91 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.16 Total: -13.01 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.82 -8.45 -42.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273292446.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.354 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds