Wall clock time and date at job start Tue Mar 31 2020 18:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00144 * 2 1 4 4 H 1.48499 * 109.47064 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47310 * 299.99934 * 3 2 1 6 6 H 1.48502 * 109.47149 * 60.00026 * 3 2 1 7 7 C 1.38810 * 119.99830 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00367 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99897 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99753 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.46780 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.51481 * 60.10109 * 11 10 9 13 13 C 1.53709 * 109.48398 * 180.36117 * 11 10 9 14 14 N 1.47156 * 108.16312 * 172.39619 * 13 11 10 15 15 C 1.34781 * 120.97826 * 129.43197 * 14 13 11 16 16 O 1.21576 * 120.00036 * 353.16817 * 15 14 13 17 17 C 1.47511 * 119.99651 * 173.44175 * 15 14 13 18 18 O 1.35187 * 127.15555 * 352.05624 * 17 15 14 19 19 N 1.21477 * 111.55321 * 179.74518 * 18 17 15 20 20 C 1.29067 * 111.68923 * 0.39585 * 19 18 17 21 21 C 1.35245 * 127.15532 * 172.37316 * 17 15 14 22 22 C 1.50115 * 131.33277 * 0.37760 * 21 17 15 23 23 C 1.53577 * 108.01565 * 163.70438 * 22 21 17 24 24 C 1.53008 * 109.80221 * 50.04360 * 23 22 21 25 25 C 1.50648 * 130.34176 * 180.12162 * 20 19 18 26 26 C 1.47148 * 118.03830 * 309.16141 * 14 13 11 27 27 C 1.53298 * 108.38430 * 50.78507 * 26 14 13 28 28 O 1.42963 * 109.21903 * 307.69650 * 27 26 14 29 29 H 0.97002 * 119.99856 * 359.97438 * 1 2 3 30 30 H 0.96993 * 120.00111 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.46914 * 60.00108 * 10 9 7 32 32 H 1.08992 * 109.46862 * 300.00067 * 10 9 7 33 33 H 1.09002 * 109.83653 * 52.72222 * 13 11 10 34 34 H 1.08999 * 109.74811 * 292.02634 * 13 11 10 35 35 H 1.08996 * 109.75281 * 283.33204 * 22 21 17 36 36 H 1.08992 * 109.75280 * 44.07726 * 22 21 17 37 37 H 1.08999 * 109.41693 * 289.94336 * 23 22 21 38 38 H 1.08999 * 109.41916 * 170.14309 * 23 22 21 39 39 H 1.08994 * 109.37811 * 168.09807 * 24 23 22 40 40 H 1.09003 * 109.38036 * 48.43256 * 24 23 22 41 41 H 1.09005 * 109.73915 * 282.82037 * 25 20 19 42 42 H 1.08994 * 109.74036 * 43.52847 * 25 20 19 43 43 H 1.09006 * 109.68518 * 170.50648 * 26 14 13 44 44 H 1.08999 * 109.68430 * 291.05983 * 26 14 13 45 45 H 1.09003 * 109.51400 * 67.62164 * 27 26 14 46 46 H 1.09000 * 109.51210 * 187.77605 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0017 11 6 1.0636 -4.8197 0.0021 12 1 0.4381 -4.7642 -0.8889 13 6 1.8318 -6.1510 0.0124 14 7 0.8596 -7.2401 0.1976 15 6 0.8487 -8.3076 -0.6251 16 8 1.5637 -8.3247 -1.6083 17 6 -0.0352 -9.4526 -0.3359 18 8 -0.7755 -9.6518 0.7776 19 7 -1.4043 -10.6893 0.7158 20 6 -1.1840 -11.3153 -0.3912 21 6 -0.2690 -10.5243 -1.1270 22 6 0.2650 -10.8926 -2.4808 23 6 -0.0158 -12.3847 -2.7123 24 6 -1.4851 -12.6883 -2.4121 25 6 -1.7371 -12.6210 -0.8998 26 6 -0.0962 -7.1321 1.3111 27 6 -0.7670 -5.7555 1.2407 28 8 0.2408 -4.7440 1.1687 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.6838 -3.7142 0.8922 32 1 2.6852 -3.7149 -0.8877 33 1 2.5503 -6.1571 0.8320 34 1 2.3540 -6.2823 -0.9353 35 1 -0.2346 -10.3005 -3.2474 36 1 1.3390 -10.7103 -2.5152 37 1 0.6187 -12.9790 -2.0548 38 1 0.2018 -12.6376 -3.7500 39 1 -1.7296 -13.6863 -2.7755 40 1 -2.1160 -11.9567 -2.9169 41 1 -1.2334 -13.4517 -0.4054 42 1 -2.8080 -12.6690 -0.7026 43 1 -0.8514 -7.9133 1.2238 44 1 0.4315 -7.2353 2.2592 45 1 -1.3992 -5.7034 0.3543 46 1 -1.3750 -5.6008 2.1321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273292446.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:54 Heat of formation + Delta-G solvation = -21.583633 kcal Electronic energy + Delta-G solvation = -29253.862322 eV Core-core repulsion = 25146.472651 eV Total energy + Delta-G solvation = -4107.389671 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.15180 -41.51331 -39.68942 -38.73512 -36.71341 -35.91915 -34.23842 -33.79281 -33.44037 -31.94479 -30.94679 -29.46065 -27.58724 -26.06900 -25.13817 -24.64426 -24.19554 -23.35867 -22.15562 -21.05093 -20.63019 -19.24546 -18.95971 -18.67708 -17.88948 -17.46772 -17.25294 -16.74634 -16.55345 -16.09355 -15.94440 -15.76083 -15.62117 -15.12901 -15.02489 -14.92966 -14.56543 -14.43549 -14.26252 -14.05529 -13.76157 -13.44807 -13.34728 -12.97625 -12.86840 -12.81446 -12.66034 -12.29492 -12.03434 -11.99543 -11.91103 -11.86490 -11.72262 -11.51059 -11.39400 -11.21349 -10.99543 -10.96102 -10.65882 -9.78586 -8.99517 -7.93067 -5.22429 -0.40757 0.92540 1.23583 1.48719 1.50109 1.60236 1.64454 1.86174 2.57217 2.71130 2.79961 3.08031 3.41028 3.47083 3.56135 3.72449 3.80582 3.87797 3.89176 3.93062 4.01219 4.10475 4.23760 4.27073 4.36077 4.37761 4.45303 4.47022 4.50315 4.63644 4.70288 4.80481 4.83421 4.87187 4.94154 4.95598 5.06621 5.09382 5.11134 5.13495 5.26897 5.38070 5.50258 5.90423 6.18576 6.28594 6.55052 6.93757 7.34698 8.09059 8.33180 9.30961 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028381 B = 0.002244 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.326620 B =12474.346169 C =12909.010589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.243 4.243 8 H 0.080 0.920 9 N -0.741 5.741 10 C 0.160 3.840 11 C 0.084 3.916 12 H 0.051 0.949 13 C 0.097 3.903 14 N -0.601 5.601 15 C 0.607 3.393 16 O -0.535 6.535 17 C -0.096 4.096 18 O 0.092 5.908 19 N -0.353 5.353 20 C 0.023 3.977 21 C -0.117 4.117 22 C -0.055 4.055 23 C -0.117 4.117 24 C -0.116 4.116 25 C -0.043 4.043 26 C 0.070 3.930 27 C 0.043 3.957 28 O -0.383 6.383 29 H 0.251 0.749 30 H 0.375 0.625 31 H 0.034 0.966 32 H 0.048 0.952 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.115 0.885 44 H 0.101 0.899 45 H 0.050 0.950 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.909 -31.236 -2.294 31.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.384 5.384 10 C 0.033 3.967 11 C 0.025 3.975 12 H 0.069 0.931 13 C -0.026 4.026 14 N -0.333 5.333 15 C 0.394 3.606 16 O -0.413 6.413 17 C -0.159 4.159 18 O 0.026 5.974 19 N -0.059 5.059 20 C -0.138 4.138 21 C -0.122 4.122 22 C -0.092 4.092 23 C -0.154 4.154 24 C -0.154 4.154 25 C -0.081 4.081 26 C -0.052 4.052 27 C -0.034 4.034 28 O -0.302 6.302 29 H 0.059 0.941 30 H 0.207 0.793 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.123 0.877 40 H 0.084 0.916 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.132 0.868 44 H 0.119 0.881 45 H 0.068 0.932 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.056 -31.229 -1.602 31.420 hybrid contribution 0.168 1.280 -0.535 1.398 sum -2.888 -29.949 -2.137 30.164 Atomic orbital electron populations 1.69851 1.06745 1.25953 1.59591 1.25628 0.96446 1.01286 1.03761 0.85020 0.78286 0.79529 0.76588 1.18787 1.22038 1.22112 1.19713 0.91638 0.85152 1.41013 0.90210 1.42425 1.05738 1.00881 1.89336 1.20790 0.92963 0.83703 0.99231 1.22614 0.92414 0.94199 0.88226 0.93112 1.22387 0.90977 0.83948 1.05257 1.48092 1.35040 1.19700 1.30461 1.16721 0.80943 0.80524 0.82415 1.90830 1.42734 1.80099 1.27597 1.23194 1.02142 0.99907 0.90651 1.85324 1.44681 1.31357 1.35997 1.73404 1.14451 0.96455 1.21624 1.24015 0.98237 1.01254 0.90264 1.21533 0.98107 0.92394 1.00151 1.20266 1.01431 0.98511 0.88986 1.21690 0.97068 0.92990 1.03699 1.21655 0.96396 1.04215 0.93140 1.20401 1.02072 0.88671 0.96924 1.22928 0.93024 0.99350 0.89887 1.23155 0.90150 0.86109 1.03959 1.88123 1.47002 1.52497 1.42568 0.94067 0.79329 0.94853 0.93449 0.88272 0.87625 0.89369 0.89856 0.91090 0.88750 0.87700 0.91589 0.87674 0.88294 0.86778 0.88133 0.93200 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.02 13.06 21.65 0.28 -60.73 16 2 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 3 Si 0.98 46.91 29.55 68.60 2.03 48.94 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 7 C -0.24 -13.90 9.99 84.03 0.84 -13.06 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 9 N -0.74 -39.10 5.50 -343.46 -1.89 -40.99 16 10 C 0.16 6.48 5.96 86.38 0.51 6.99 16 11 C 0.08 2.86 2.88 30.83 0.09 2.94 16 12 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 13 C 0.10 2.62 5.97 86.49 0.52 3.14 16 14 N -0.60 -15.20 3.01 -820.33 -2.47 -17.67 16 15 C 0.61 16.16 7.69 86.69 0.67 16.82 16 16 O -0.53 -16.48 15.36 -3.95 -0.06 -16.54 16 17 C -0.10 -2.24 6.86 24.03 0.16 -2.07 16 18 O 0.09 2.05 8.06 59.49 0.48 2.53 16 19 N -0.35 -7.75 12.03 -50.84 -0.61 -8.37 16 20 C 0.02 0.43 7.22 43.77 0.32 0.74 16 21 C -0.12 -2.37 6.02 -19.91 -0.12 -2.49 16 22 C -0.05 -0.88 5.65 29.86 0.17 -0.71 16 23 C -0.12 -1.07 5.87 30.79 0.18 -0.89 16 24 C -0.12 -0.83 5.84 30.75 0.18 -0.65 16 25 C -0.04 -0.43 6.32 29.99 0.19 -0.24 16 26 C 0.07 1.50 6.30 86.36 0.54 2.04 16 27 C 0.04 1.10 6.99 72.08 0.50 1.60 16 28 O -0.38 -13.37 10.13 -148.98 -1.51 -14.88 16 29 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.37 21.41 7.54 -92.71 -0.70 20.71 16 31 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.11 2.88 7.06 -2.39 -0.02 2.86 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.54 7.67 -2.39 -0.02 1.52 16 37 H 0.07 0.63 8.11 -2.39 -0.02 0.61 16 38 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.07 0.56 8.10 -2.39 -0.02 0.54 16 41 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.11 2.21 4.48 -3.29 -0.01 2.20 16 44 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -73.27 369.88 1.77 -71.50 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.31 Total: 26.24 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 5.22 Total: 9.99 kcal Atomic # 7 Polarization: -123.07 SS G_CDS: -4.69 Total: -127.76 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -1.09 Total: -28.90 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -73.27 1.77 -71.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273292446.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.914 kcal (2) G-P(sol) polarization free energy of solvation -73.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds