Wall clock time and date at job start Tue Mar 31 2020 18:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86807 * 120.00099 * 2 1 4 4 H 1.48497 * 109.47388 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47142 * 300.00414 * 3 2 1 6 6 H 1.48503 * 109.46566 * 60.00076 * 3 2 1 7 7 C 1.38951 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00088 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99801 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99991 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99881 * 0.02562 * 10 9 7 12 12 C 1.50694 * 119.99946 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.46829 * 180.02562 * 12 10 9 14 14 C 1.44276 * 110.99681 * 68.02816 * 13 12 10 15 15 C 1.54061 * 111.97619 * 219.30968 * 14 13 12 16 16 C 1.54147 * 112.33372 * 318.82011 * 15 14 13 17 17 C 1.50458 * 113.12589 * 318.48903 * 16 15 14 18 18 H 1.09005 * 109.57373 * 332.10243 * 17 16 15 19 19 N 1.46504 * 109.57444 * 211.85737 * 17 16 15 20 20 C 1.34775 * 120.00008 * 85.24226 * 19 17 16 21 21 O 1.21697 * 120.00320 * 0.02562 * 20 19 17 22 22 C 1.46653 * 119.99854 * 180.02562 * 20 19 17 23 23 C 1.36544 * 125.98850 * 180.02562 * 22 20 19 24 24 C 1.40364 * 106.70997 * 179.74204 * 23 22 20 25 25 C 1.35134 * 107.11302 * 0.24501 * 24 23 22 26 26 O 1.33924 * 108.76672 * 359.97438 * 25 24 23 27 27 C 1.54512 * 108.96429 * 91.97762 * 17 16 15 28 28 C 1.45856 * 111.58777 * 282.88649 * 27 17 16 29 29 H 0.97008 * 120.00112 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00249 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47290 * 60.00212 * 12 10 9 32 32 H 1.09002 * 109.47306 * 299.99805 * 12 10 9 33 33 H 1.08996 * 108.97982 * 339.95391 * 14 13 12 34 34 H 1.09001 * 108.97867 * 98.66894 * 14 13 12 35 35 H 1.09003 * 108.92001 * 79.63990 * 15 14 13 36 36 H 1.08996 * 108.91994 * 198.28835 * 15 14 13 37 37 H 1.09004 * 108.80910 * 197.48041 * 16 15 14 38 38 H 1.08997 * 108.63850 * 79.37134 * 16 15 14 39 39 H 0.97001 * 119.99869 * 265.25449 * 19 17 16 40 40 H 1.08002 * 126.64784 * 0.02562 * 23 22 20 41 41 H 1.07997 * 126.44725 * 180.24400 * 24 23 22 42 42 H 1.08003 * 125.61576 * 179.97438 * 25 24 23 43 43 H 1.09002 * 109.05211 * 43.43339 * 27 17 16 44 44 H 1.08995 * 109.05557 * 162.34536 * 27 17 16 45 45 H 1.09001 * 108.79691 * 182.20659 * 28 27 17 46 46 H 1.08998 * 108.79625 * 300.43655 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8629 -0.0010 13 7 2.1984 -5.9795 -0.0017 14 6 2.9184 -6.0449 1.2468 15 6 4.4015 -6.4063 1.0389 16 6 4.5931 -7.5044 -0.0258 17 6 3.5758 -8.6084 0.0743 18 1 3.2336 -8.6974 1.1054 19 7 4.1800 -9.8728 -0.3531 20 6 4.8766 -10.6183 0.5274 21 8 5.0035 -10.2415 1.6776 22 6 5.4819 -11.8837 0.0994 23 6 6.2088 -12.7316 0.8850 24 6 6.5846 -13.8125 0.0721 25 6 6.0815 -13.5773 -1.1598 26 8 5.4202 -12.4129 -1.1401 27 6 2.3776 -8.2717 -0.8414 28 6 1.5095 -7.2651 -0.2408 29 1 -0.4851 0.8401 0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.6160 -4.9205 -0.8903 32 1 0.6181 -4.9209 0.8897 33 1 2.8556 -5.0766 1.7434 34 1 2.4557 -6.7988 1.8837 35 1 4.9427 -5.5128 0.7277 36 1 4.8152 -6.7586 1.9837 37 1 5.5887 -7.9335 0.0871 38 1 4.5201 -7.0487 -1.0133 39 1 4.0787 -10.1733 -1.2698 40 1 6.4447 -12.5988 1.9305 41 1 7.1663 -14.6707 0.3744 42 1 6.1943 -14.2221 -2.0189 43 1 2.7521 -7.8963 -1.7938 44 1 1.8003 -9.1787 -1.0200 45 1 0.6621 -7.0914 -0.9040 46 1 1.1362 -7.6455 0.7100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273383003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:16 Heat of formation + Delta-G solvation = -44.399173 kcal Electronic energy + Delta-G solvation = -28672.383036 eV Core-core repulsion = 24564.004010 eV Total energy + Delta-G solvation = -4108.379027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.02778 -40.18262 -38.99044 -37.61769 -35.41353 -33.84296 -33.46343 -32.64538 -32.04615 -31.17451 -30.15267 -27.89063 -25.42218 -25.04153 -23.83193 -23.11366 -22.11065 -20.92045 -20.50478 -19.72178 -18.97520 -18.71558 -17.82113 -16.71176 -16.65009 -16.54693 -16.03370 -15.52505 -15.14443 -14.67172 -14.60586 -14.33981 -14.19375 -13.96614 -13.69364 -13.59686 -13.37235 -13.34316 -13.04150 -12.87331 -12.56966 -12.11370 -11.97719 -11.72923 -11.47887 -11.20867 -10.97775 -10.86221 -10.65329 -10.51315 -10.44584 -10.41792 -10.32364 -10.19539 -10.06236 -9.46537 -9.32288 -8.99483 -8.38767 -7.92960 -7.87437 -6.38872 -3.79234 0.73265 1.98812 2.33119 2.93600 2.97725 3.18148 3.28511 3.35764 3.93461 3.97941 4.25875 4.32463 4.51634 4.53438 4.67151 5.02865 5.11547 5.19664 5.25330 5.27660 5.29252 5.38787 5.44308 5.46284 5.51504 5.53489 5.70855 5.72772 5.82142 5.84706 5.93062 5.99321 6.09929 6.13802 6.16874 6.31061 6.38203 6.44823 6.50224 6.58409 6.77791 7.24213 7.35290 7.48936 7.58191 7.87153 8.10001 8.65632 9.21835 9.58506 10.10600 10.79088 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.034603 B = 0.001962 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.972566 B =14265.035744 C =14567.030930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.568 5.568 10 C 0.444 3.556 11 O -0.573 6.573 12 C 0.045 3.955 13 N -0.506 5.506 14 C 0.064 3.936 15 C -0.098 4.098 16 C -0.116 4.116 17 C 0.148 3.852 18 H 0.088 0.912 19 N -0.713 5.713 20 C 0.601 3.399 21 O -0.517 6.517 22 C -0.077 4.077 23 C -0.123 4.123 24 C -0.225 4.225 25 C -0.009 4.009 26 O -0.164 6.164 27 C -0.117 4.117 28 C 0.055 3.945 29 H 0.270 0.730 30 H 0.391 0.609 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.028 0.972 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.403 0.597 40 H 0.160 0.840 41 H 0.156 0.844 42 H 0.210 0.790 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.335 -26.777 -2.697 27.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.755 3.245 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.425 4.425 8 H 0.121 0.879 9 N -0.205 5.205 10 C 0.229 3.771 11 O -0.456 6.456 12 C -0.086 4.086 13 N -0.230 5.230 14 C -0.064 4.064 15 C -0.136 4.136 16 C -0.155 4.155 17 C 0.044 3.956 18 H 0.107 0.893 19 N -0.363 5.363 20 C 0.386 3.614 21 O -0.394 6.394 22 C -0.129 4.129 23 C -0.144 4.144 24 C -0.244 4.244 25 C -0.079 4.079 26 O -0.060 6.060 27 C -0.156 4.156 28 C -0.073 4.073 29 H 0.080 0.920 30 H 0.224 0.776 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.046 0.954 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.238 0.762 40 H 0.178 0.822 41 H 0.174 0.826 42 H 0.227 0.773 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.285 -26.068 -2.493 26.930 hybrid contribution -0.721 0.360 0.219 0.835 sum 5.565 -25.707 -2.275 26.401 Atomic orbital electron populations 1.69620 1.05910 1.27940 1.51008 1.25245 0.95621 0.99661 0.97521 0.85819 0.79718 0.81270 0.77649 1.19255 1.20809 1.20838 1.19733 0.93351 0.82216 1.47231 0.87904 1.41879 1.09149 1.04601 1.64849 1.19750 0.88485 0.84517 0.84333 1.90521 1.13543 1.86930 1.54633 1.21958 0.93911 0.91252 1.01455 1.61203 1.25426 1.01095 1.35311 1.21828 0.94415 1.00798 0.89373 1.21722 0.96213 0.98243 0.97452 1.21548 0.97467 0.95013 1.01438 1.20915 0.93214 0.81799 0.99625 0.89346 1.46085 1.53648 1.22802 1.13791 1.16546 0.78473 0.80994 0.85355 1.90908 1.60086 1.70453 1.17939 1.22216 1.08498 0.98563 0.83600 1.22009 0.97751 0.93210 1.01382 1.21883 1.06981 1.01872 0.93697 1.24421 0.96468 0.86692 1.00323 1.84062 1.59261 1.31554 1.31098 1.20840 0.96224 0.98529 0.99958 1.20934 0.96123 0.90081 1.00178 0.92012 0.77576 0.89390 0.93461 0.90841 0.95427 0.90453 0.92821 0.92839 0.90986 0.76235 0.82208 0.82591 0.77334 0.90253 0.91172 0.90822 0.94563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.57 -14.28 5.29 -10.96 -0.06 -14.33 16 10 C 0.44 10.30 7.15 -10.99 -0.08 10.22 16 11 O -0.57 -15.11 14.63 5.55 0.08 -15.03 16 12 C 0.05 0.79 5.26 -4.98 -0.03 0.76 16 13 N -0.51 -8.09 3.95 -241.00 -0.95 -9.04 16 14 C 0.06 1.06 4.25 -4.67 -0.02 1.04 16 15 C -0.10 -1.56 6.14 -25.58 -0.16 -1.72 16 16 C -0.12 -1.62 5.12 -27.40 -0.14 -1.76 16 17 C 0.15 1.76 2.12 -68.40 -0.14 1.61 16 18 H 0.09 1.20 6.61 -51.93 -0.34 0.86 16 19 N -0.71 -7.46 4.99 -55.58 -0.28 -7.74 16 20 C 0.60 7.40 7.59 -12.87 -0.10 7.30 16 21 O -0.52 -8.07 16.53 5.19 0.09 -7.98 16 22 C -0.08 -0.80 7.13 -36.80 -0.26 -1.06 16 23 C -0.12 -1.14 10.62 -39.39 -0.42 -1.56 16 24 C -0.23 -1.51 10.88 -39.89 -0.43 -1.94 16 25 C -0.01 -0.05 12.08 29.63 0.36 0.30 16 26 O -0.16 -1.40 10.40 5.01 0.05 -1.35 16 27 C -0.12 -1.21 5.02 -29.32 -0.15 -1.36 16 28 C 0.05 0.66 4.96 -6.71 -0.03 0.63 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 31 H 0.09 1.37 7.78 -51.93 -0.40 0.96 16 32 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 33 H 0.07 1.41 6.38 -51.93 -0.33 1.08 16 34 H 0.03 0.41 6.51 -51.93 -0.34 0.07 16 35 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.76 7.80 -51.93 -0.40 0.36 16 38 H 0.07 1.06 7.39 -51.93 -0.38 0.68 16 39 H 0.40 3.28 8.37 -40.82 -0.34 2.93 16 40 H 0.16 1.41 8.06 -52.49 -0.42 0.98 16 41 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.21 0.34 8.06 -52.48 -0.42 -0.08 16 43 H 0.08 0.85 7.60 -51.93 -0.39 0.45 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.79 7.58 -51.93 -0.39 0.40 16 46 H 0.04 0.42 7.24 -51.93 -0.38 0.04 16 LS Contribution 376.48 15.07 5.67 5.67 Total: -1.00 -33.34 376.48 -8.03 -41.37 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -6.50 Total: 11.62 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -1.84 Total: 4.56 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.56 Total: -55.01 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: 0.22 Total: -24.36 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.34 -8.03 -41.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273383003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.027 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds