Wall clock time and date at job start Tue Mar 31 2020 18:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86807 * 120.00099 * 2 1 4 4 H 1.48497 * 109.47388 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47142 * 300.00414 * 3 2 1 6 6 H 1.48503 * 109.46566 * 60.00076 * 3 2 1 7 7 C 1.38951 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00088 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99801 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99991 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99881 * 0.02562 * 10 9 7 12 12 C 1.50694 * 119.99946 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.46829 * 180.02562 * 12 10 9 14 14 C 1.44276 * 110.99681 * 68.02816 * 13 12 10 15 15 C 1.54061 * 111.97619 * 219.30968 * 14 13 12 16 16 C 1.54147 * 112.33372 * 318.82011 * 15 14 13 17 17 C 1.50458 * 113.12589 * 318.48903 * 16 15 14 18 18 H 1.09005 * 109.57373 * 332.10243 * 17 16 15 19 19 N 1.46504 * 109.57444 * 211.85737 * 17 16 15 20 20 C 1.34775 * 120.00008 * 85.24226 * 19 17 16 21 21 O 1.21697 * 120.00320 * 0.02562 * 20 19 17 22 22 C 1.46653 * 119.99854 * 180.02562 * 20 19 17 23 23 C 1.36544 * 125.98850 * 180.02562 * 22 20 19 24 24 C 1.40364 * 106.70997 * 179.74204 * 23 22 20 25 25 C 1.35134 * 107.11302 * 0.24501 * 24 23 22 26 26 O 1.33924 * 108.76672 * 359.97438 * 25 24 23 27 27 C 1.54512 * 108.96429 * 91.97762 * 17 16 15 28 28 C 1.45856 * 111.58777 * 282.88649 * 27 17 16 29 29 H 0.97008 * 120.00112 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00249 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47290 * 60.00212 * 12 10 9 32 32 H 1.09002 * 109.47306 * 299.99805 * 12 10 9 33 33 H 1.08996 * 108.97982 * 339.95391 * 14 13 12 34 34 H 1.09001 * 108.97867 * 98.66894 * 14 13 12 35 35 H 1.09003 * 108.92001 * 79.63990 * 15 14 13 36 36 H 1.08996 * 108.91994 * 198.28835 * 15 14 13 37 37 H 1.09004 * 108.80910 * 197.48041 * 16 15 14 38 38 H 1.08997 * 108.63850 * 79.37134 * 16 15 14 39 39 H 0.97001 * 119.99869 * 265.25449 * 19 17 16 40 40 H 1.08002 * 126.64784 * 0.02562 * 23 22 20 41 41 H 1.07997 * 126.44725 * 180.24400 * 24 23 22 42 42 H 1.08003 * 125.61576 * 179.97438 * 25 24 23 43 43 H 1.09002 * 109.05211 * 43.43339 * 27 17 16 44 44 H 1.08995 * 109.05557 * 162.34536 * 27 17 16 45 45 H 1.09001 * 108.79691 * 182.20659 * 28 27 17 46 46 H 1.08998 * 108.79625 * 300.43655 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8629 -0.0010 13 7 2.1984 -5.9795 -0.0017 14 6 2.9184 -6.0449 1.2468 15 6 4.4015 -6.4063 1.0389 16 6 4.5931 -7.5044 -0.0258 17 6 3.5758 -8.6084 0.0743 18 1 3.2336 -8.6974 1.1054 19 7 4.1800 -9.8728 -0.3531 20 6 4.8766 -10.6183 0.5274 21 8 5.0035 -10.2415 1.6776 22 6 5.4819 -11.8837 0.0994 23 6 6.2088 -12.7316 0.8850 24 6 6.5846 -13.8125 0.0721 25 6 6.0815 -13.5773 -1.1598 26 8 5.4202 -12.4129 -1.1401 27 6 2.3776 -8.2717 -0.8414 28 6 1.5095 -7.2651 -0.2408 29 1 -0.4851 0.8401 0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.6160 -4.9205 -0.8903 32 1 0.6181 -4.9209 0.8897 33 1 2.8556 -5.0766 1.7434 34 1 2.4557 -6.7988 1.8837 35 1 4.9427 -5.5128 0.7277 36 1 4.8152 -6.7586 1.9837 37 1 5.5887 -7.9335 0.0871 38 1 4.5201 -7.0487 -1.0133 39 1 4.0787 -10.1733 -1.2698 40 1 6.4447 -12.5988 1.9305 41 1 7.1663 -14.6707 0.3744 42 1 6.1943 -14.2221 -2.0189 43 1 2.7521 -7.8963 -1.7938 44 1 1.8003 -9.1787 -1.0200 45 1 0.6621 -7.0914 -0.9040 46 1 1.1362 -7.6455 0.7100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273383003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:16 Heat of formation + Delta-G solvation = -69.572488 kcal Electronic energy + Delta-G solvation = -28673.474633 eV Core-core repulsion = 24564.004010 eV Total energy + Delta-G solvation = -4109.470624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.62989 -41.23926 -40.36440 -39.14047 -36.59437 -35.78859 -34.11887 -33.81403 -33.19400 -33.06358 -30.87399 -29.27314 -27.03687 -26.09938 -25.40592 -23.94448 -22.69536 -21.94804 -21.35209 -21.14148 -20.52186 -19.81908 -19.48649 -17.72911 -17.63921 -17.32131 -17.23144 -16.76935 -16.59036 -16.24177 -15.75715 -15.61410 -15.60254 -15.40881 -15.06126 -14.77073 -14.24137 -14.11908 -13.94564 -13.83099 -13.67607 -13.55234 -13.49549 -13.22141 -12.91492 -12.79731 -12.38143 -12.34639 -12.12312 -11.96607 -11.88566 -11.57178 -11.47420 -11.45155 -11.22274 -11.04621 -10.28032 -10.23876 -9.96014 -9.63852 -9.18643 -8.44341 -5.91968 0.03174 1.36627 1.41400 1.43674 1.55324 1.65569 2.09274 2.11398 2.20557 2.29415 2.77010 3.23070 3.43652 3.59475 3.74793 3.96041 3.96758 4.03076 4.12947 4.20504 4.31924 4.33457 4.38964 4.39859 4.53731 4.60492 4.62520 4.70585 4.77756 4.82442 4.91375 4.94924 4.96561 5.07565 5.17925 5.24716 5.36554 5.37048 5.40482 5.43518 5.45935 5.84470 5.94638 6.15749 6.27695 6.44262 6.65016 7.01237 7.17098 7.61681 8.18344 8.73398 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.034603 B = 0.001962 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.972566 B =14265.035744 C =14567.030930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.990 3.010 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.328 4.328 8 H 0.077 0.923 9 N -0.578 5.578 10 C 0.441 3.559 11 O -0.610 6.610 12 C 0.058 3.942 13 N -0.523 5.523 14 C 0.072 3.928 15 C -0.095 4.095 16 C -0.105 4.105 17 C 0.154 3.846 18 H 0.074 0.926 19 N -0.701 5.701 20 C 0.599 3.401 21 O -0.561 6.561 22 C -0.109 4.109 23 C -0.129 4.129 24 C -0.236 4.236 25 C 0.012 3.988 26 O -0.169 6.169 27 C -0.110 4.110 28 C 0.053 3.947 29 H 0.276 0.724 30 H 0.395 0.605 31 H 0.116 0.884 32 H 0.067 0.933 33 H 0.037 0.963 34 H 0.047 0.953 35 H 0.042 0.958 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.064 0.936 39 H 0.417 0.583 40 H 0.155 0.845 41 H 0.182 0.818 42 H 0.256 0.744 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.443 -29.215 -4.291 29.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.214 4.214 3 Si 0.814 3.186 4 H -0.200 1.200 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.457 4.457 8 H 0.095 0.905 9 N -0.217 5.217 10 C 0.228 3.772 11 O -0.495 6.495 12 C -0.073 4.073 13 N -0.247 5.247 14 C -0.057 4.057 15 C -0.134 4.134 16 C -0.143 4.143 17 C 0.050 3.950 18 H 0.092 0.908 19 N -0.351 5.351 20 C 0.386 3.614 21 O -0.442 6.442 22 C -0.160 4.160 23 C -0.150 4.150 24 C -0.255 4.255 25 C -0.057 4.057 26 O -0.064 6.064 27 C -0.148 4.148 28 C -0.074 4.074 29 H 0.086 0.914 30 H 0.229 0.771 31 H 0.134 0.866 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.254 0.746 40 H 0.172 0.828 41 H 0.199 0.801 42 H 0.272 0.728 43 H 0.098 0.902 44 H 0.121 0.879 45 H 0.115 0.885 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.360 -28.532 -4.123 29.322 hybrid contribution -0.357 0.978 0.692 1.250 sum 5.002 -27.553 -3.431 28.213 Atomic orbital electron populations 1.69676 1.06713 1.29037 1.50862 1.25982 0.96531 1.02243 0.96618 0.84911 0.77977 0.77416 0.78269 1.20018 1.19588 1.19748 1.19649 0.92563 0.84089 1.49437 0.90548 1.41943 1.09257 1.04682 1.65769 1.20856 0.88418 0.85980 0.81924 1.90502 1.15612 1.87804 1.55625 1.21835 0.93522 0.88338 1.03596 1.61173 1.26003 1.02682 1.34867 1.21700 0.94718 0.99325 0.89965 1.21637 0.95978 0.97560 0.98186 1.21435 0.97982 0.94996 0.99933 1.20741 0.93206 0.81504 0.99582 0.90795 1.45914 1.52940 1.21934 1.14263 1.16812 0.78054 0.81608 0.84917 1.90874 1.61835 1.71784 1.19718 1.21824 1.10645 0.98709 0.84855 1.22261 0.97217 0.94006 1.01549 1.22219 1.07631 1.01983 0.93628 1.25398 0.93577 0.85380 1.01387 1.84054 1.59765 1.32568 1.30027 1.20810 0.95458 0.99436 0.99074 1.21089 0.96794 0.88121 1.01431 0.91439 0.77086 0.86638 0.91539 0.94393 0.93480 0.93955 0.92743 0.93670 0.91755 0.74629 0.82754 0.80063 0.72794 0.90153 0.87852 0.88504 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.10 13.05 21.66 0.28 -49.82 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 3 Si 0.99 43.69 29.55 68.60 2.03 45.72 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.33 -18.79 9.68 84.04 0.81 -17.98 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.58 -29.77 5.29 -306.99 -1.62 -31.39 16 10 C 0.44 20.92 7.15 87.65 0.63 21.54 16 11 O -0.61 -33.65 14.63 -3.07 -0.04 -33.69 16 12 C 0.06 1.95 5.26 85.55 0.45 2.40 16 13 N -0.52 -16.22 3.95 -916.40 -3.62 -19.84 16 14 C 0.07 2.41 4.25 87.15 0.37 2.78 16 15 C -0.09 -3.21 6.14 31.34 0.19 -3.02 16 16 C -0.10 -2.99 5.12 30.16 0.15 -2.84 16 17 C 0.15 3.52 2.12 44.68 0.09 3.62 16 18 H 0.07 1.97 6.61 -2.38 -0.02 1.95 16 19 N -0.70 -13.99 4.99 -447.98 -2.23 -16.22 16 20 C 0.60 14.80 7.59 86.44 0.66 15.46 16 21 O -0.56 -18.19 16.53 -4.34 -0.07 -18.26 16 22 C -0.11 -2.19 7.13 24.07 0.17 -2.02 16 23 C -0.13 -2.33 10.62 22.39 0.24 -2.09 16 24 C -0.24 -2.56 10.88 22.07 0.24 -2.32 16 25 C 0.01 0.10 12.08 67.10 0.81 0.91 16 26 O -0.17 -2.50 10.40 -4.99 -0.05 -2.56 16 27 C -0.11 -1.96 5.02 28.92 0.15 -1.82 16 28 C 0.05 1.11 4.96 83.94 0.42 1.52 16 29 H 0.28 14.05 8.31 -92.70 -0.77 13.28 16 30 H 0.40 19.28 7.90 -92.71 -0.73 18.55 16 31 H 0.12 3.28 7.78 -2.39 -0.02 3.26 16 32 H 0.07 2.01 8.09 -2.39 -0.02 1.99 16 33 H 0.04 1.52 6.38 -2.39 -0.02 1.51 16 34 H 0.05 1.37 6.51 -2.39 -0.02 1.36 16 35 H 0.04 1.70 8.11 -2.39 -0.02 1.68 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.04 1.34 7.80 -2.38 -0.02 1.32 16 38 H 0.06 1.93 7.39 -2.39 -0.02 1.91 16 39 H 0.42 6.00 8.37 -92.71 -0.78 5.23 16 40 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 41 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.26 -0.52 8.06 -2.91 -0.02 -0.54 16 43 H 0.08 1.49 7.60 -2.39 -0.02 1.47 16 44 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.10 1.66 7.58 -2.39 -0.02 1.64 16 46 H 0.05 0.93 7.24 -2.39 -0.02 0.91 16 Total: -1.00 -76.54 376.48 0.04 -76.50 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -0.48 Total: 33.73 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 5.85 Total: 15.82 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -7.19 Total: -117.27 kcal Atomic # 8 Polarization: -54.34 SS G_CDS: -0.17 Total: -54.51 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -76.54 0.04 -76.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273383003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.932 kcal (2) G-P(sol) polarization free energy of solvation -76.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds