Wall clock time and date at job start Tue Mar 31 2020 19:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46577 * 180.02562 * 9 7 2 11 11 C 1.40424 * 111.00010 * 66.04804 * 10 9 7 12 12 C 1.54109 * 111.96792 * 188.31647 * 11 10 9 13 13 O 1.40644 * 109.12272 * 282.16287 * 12 11 10 14 14 C 1.44078 * 116.45477 * 93.87927 * 13 12 11 15 15 C 1.53440 * 112.40348 * 318.27353 * 14 13 12 16 16 C 1.54164 * 109.52722 * 194.30032 * 15 14 13 17 17 C 1.51405 * 104.08685 * 219.27579 * 16 15 14 18 18 O 1.21273 * 124.94537 * 195.83566 * 17 16 15 19 19 N 1.34494 * 110.10367 * 15.87158 * 17 16 15 20 20 C 1.46498 * 124.34910 * 180.44558 * 19 17 16 21 21 C 1.50698 * 109.47582 * 269.97829 * 20 19 17 22 22 C 1.41380 * 128.00807 * 89.99509 * 21 20 19 23 23 N 1.30168 * 106.39851 * 179.97438 * 22 21 20 24 24 O 1.20929 * 111.60479 * 0.02562 * 23 22 21 25 25 C 1.34044 * 111.56240 * 359.75735 * 24 23 22 26 26 C 1.46903 * 111.29354 * 0.43094 * 19 17 16 27 27 C 1.48028 * 110.99766 * 194.24409 * 10 9 7 28 28 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 30 30 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 31 31 H 1.08991 * 108.97851 * 308.95379 * 11 10 9 32 32 H 1.08998 * 108.98455 * 67.76128 * 11 10 9 33 33 H 1.08996 * 109.53335 * 42.06035 * 12 11 10 34 34 H 1.09005 * 109.52821 * 162.20313 * 12 11 10 35 35 H 1.09008 * 108.89591 * 79.02969 * 14 13 12 36 36 H 1.09000 * 108.89463 * 197.52081 * 14 13 12 37 37 H 1.09001 * 110.50743 * 337.92678 * 16 15 14 38 38 H 1.09000 * 110.50556 * 100.62754 * 16 15 14 39 39 H 1.08998 * 109.47103 * 29.98224 * 20 19 17 40 40 H 1.09004 * 109.46784 * 149.97932 * 20 19 17 41 41 H 1.08003 * 126.79875 * 359.97438 * 22 21 20 42 42 H 1.08005 * 126.77170 * 180.28865 * 25 24 23 43 43 H 1.09001 * 110.26355 * 224.35805 * 26 19 17 44 44 H 1.09001 * 110.34609 * 102.34915 * 26 19 17 45 45 H 1.08999 * 109.61287 * 274.28741 * 27 10 9 46 46 H 1.09004 * 109.61759 * 34.80827 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 7 2.2057 -3.6157 -0.0015 11 6 2.9363 -3.6528 1.1972 12 6 4.0819 -4.6822 1.1424 13 8 3.5513 -5.9721 1.3235 14 6 3.2276 -6.7068 0.1272 15 6 2.5516 -5.8283 -0.9338 16 6 1.9168 -6.7239 -2.0161 17 6 2.1924 -5.9890 -3.3108 18 8 1.6349 -6.2069 -4.3655 19 7 3.1461 -5.0599 -3.1210 20 6 3.6462 -4.1632 -4.1659 21 6 4.8147 -4.8087 -4.8651 22 6 4.7931 -5.6481 -6.0026 23 7 6.0313 -5.9654 -6.2487 24 8 6.7874 -5.4591 -5.4522 25 6 6.1292 -4.7151 -4.5522 26 6 3.6216 -5.0597 -1.7310 27 6 1.5326 -4.8892 -0.3426 28 1 -0.4849 0.8400 0.0004 29 1 0.6240 -2.5575 0.8880 30 1 0.6247 -2.5562 -0.8920 31 1 3.3560 -2.6651 1.3872 32 1 2.2642 -3.9154 2.0141 33 1 4.5773 -4.6248 0.1732 34 1 4.8016 -4.4688 1.9328 35 1 4.1446 -7.1226 -0.2907 36 1 2.5570 -7.5260 0.3867 37 1 2.3907 -7.7055 -2.0258 38 1 0.8434 -6.8187 -1.8519 39 1 2.8531 -3.9686 -4.8879 40 1 3.9662 -3.2234 -3.7157 41 1 3.9218 -5.9636 -6.5573 42 1 6.5616 -4.1531 -3.7376 43 1 3.7064 -4.0378 -1.3612 44 1 4.5834 -5.5676 -1.6594 45 1 1.1071 -5.3309 0.5585 46 1 0.7422 -4.7021 -1.0696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032529.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:11 Heat of formation + Delta-G solvation = 14.428013 kcal Electronic energy + Delta-G solvation = -30731.401219 eV Core-core repulsion = 26625.573130 eV Total energy + Delta-G solvation = -4105.828088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.04994 -41.10914 -38.89030 -36.26128 -36.04675 -35.14521 -33.12530 -32.59897 -31.75400 -29.36077 -28.39187 -27.41199 -26.98239 -25.67947 -24.30123 -22.95601 -22.39322 -21.84258 -20.54605 -19.65480 -19.12755 -18.05833 -17.65667 -17.05528 -16.63457 -16.13260 -15.80112 -15.75721 -15.34298 -15.11784 -14.73791 -14.62052 -14.46343 -13.74625 -13.63979 -13.53055 -13.41327 -13.15159 -12.89574 -12.47422 -12.45008 -12.22277 -11.94763 -11.52869 -11.40856 -11.31982 -11.12467 -10.97178 -10.88855 -10.68486 -10.61792 -10.56464 -10.35057 -9.95808 -9.82895 -9.54304 -9.36316 -9.23790 -8.68611 -8.53373 -7.32827 -6.13189 -4.16252 1.32918 2.05753 2.66881 3.11237 3.24482 3.27567 3.30682 3.31028 3.88097 4.18155 4.21473 4.30737 4.37459 4.59816 4.67107 4.77291 4.86892 5.01080 5.07535 5.09636 5.22733 5.39029 5.43949 5.48823 5.51381 5.54216 5.59665 5.64198 5.66147 5.71756 5.76054 5.85294 5.91844 6.03731 6.18155 6.24993 6.39346 6.57669 6.60043 7.17682 7.20553 7.24821 7.44894 7.64964 7.99838 8.11118 8.15908 8.26285 8.39547 8.90353 9.48673 10.97157 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009815 B = 0.004282 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.035524 B = 6537.606579 C = 7779.842334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.201 3.799 10 N -0.548 5.548 11 C 0.047 3.953 12 C 0.054 3.946 13 O -0.386 6.386 14 C 0.080 3.920 15 C -0.098 4.098 16 C -0.143 4.143 17 C 0.522 3.478 18 O -0.539 6.539 19 N -0.603 5.603 20 C 0.202 3.798 21 C -0.217 4.217 22 C 0.008 3.992 23 N -0.371 5.371 24 O 0.093 5.907 25 C -0.046 4.046 26 C 0.103 3.897 27 C 0.075 3.925 28 H 0.263 0.737 29 H -0.007 1.007 30 H 0.030 0.970 31 H 0.094 0.906 32 H 0.020 0.980 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.189 0.811 42 H 0.217 0.783 43 H 0.130 0.870 44 H 0.056 0.944 45 H 0.043 0.957 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.052 -11.415 -2.754 15.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.076 3.924 10 N -0.272 5.272 11 C -0.083 4.083 12 C -0.024 4.024 13 O -0.305 6.305 14 C 0.004 3.996 15 C -0.100 4.100 16 C -0.184 4.184 17 C 0.310 3.690 18 O -0.417 6.417 19 N -0.335 5.335 20 C 0.079 3.921 21 C -0.223 4.223 22 C -0.171 4.171 23 N -0.076 5.076 24 O 0.029 5.971 25 C -0.128 4.128 26 C -0.019 4.019 27 C -0.053 4.053 28 H 0.073 0.927 29 H 0.010 0.990 30 H 0.048 0.952 31 H 0.112 0.888 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.207 0.793 42 H 0.234 0.766 43 H 0.147 0.853 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.522 -12.086 -4.440 16.628 hybrid contribution -0.776 1.353 0.889 1.796 sum 9.746 -10.733 -3.551 14.926 Atomic orbital electron populations 1.69937 1.06100 1.27051 1.50299 1.24973 0.94815 0.99283 0.95279 0.86589 0.79475 0.82900 0.78586 1.20198 1.21368 1.20261 1.21066 0.93257 0.89864 1.50930 0.91939 1.19695 0.89747 0.86654 0.96258 1.59348 1.29600 1.03675 1.34534 1.21524 0.95636 1.00034 0.91141 1.22861 0.95727 0.82130 1.01636 1.87514 1.83507 1.29162 1.30308 1.22960 0.98397 0.93117 0.85174 1.21739 0.97084 0.95907 0.95265 1.22379 1.03897 0.99314 0.92789 1.20855 0.78606 0.79796 0.89780 1.90687 1.52929 1.67748 1.30308 1.48275 1.38699 1.35939 1.10609 1.19465 0.92208 0.91203 0.89204 1.21959 0.96283 1.04619 0.99392 1.25070 0.95732 0.98529 0.97764 1.73882 1.03092 1.17859 1.12738 1.84817 1.34217 1.47364 1.30686 1.25935 0.91970 0.98165 0.96775 1.22768 0.94702 1.05406 0.79059 1.21663 0.94147 0.90075 0.99389 0.92741 0.98956 0.95219 0.88767 0.96189 0.92009 0.89788 0.93002 0.89245 0.87997 0.87698 0.88588 0.88021 0.79348 0.76604 0.85293 0.92633 0.93860 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.24 13.29 55.43 0.74 -24.51 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.51 -12.91 8.35 -34.44 -0.29 -13.20 16 8 H 0.06 1.51 7.08 -52.49 -0.37 1.14 16 9 C 0.20 4.69 4.73 -4.97 -0.02 4.66 16 10 N -0.55 -9.80 2.23 -240.94 -0.54 -10.34 16 11 C 0.05 0.78 4.94 -6.60 -0.03 0.75 16 12 C 0.05 0.70 6.36 37.74 0.24 0.94 16 13 O -0.39 -5.16 10.18 -34.30 -0.35 -5.51 16 14 C 0.08 0.87 5.52 37.39 0.21 1.08 16 15 C -0.10 -1.19 0.58 -154.33 -0.09 -1.28 16 16 C -0.14 -1.65 5.73 -26.93 -0.15 -1.80 16 17 C 0.52 7.61 8.03 -10.77 -0.09 7.53 16 18 O -0.54 -9.60 17.60 5.56 0.10 -9.50 16 19 N -0.60 -7.86 2.92 -173.91 -0.51 -8.37 16 20 C 0.20 2.41 6.51 -5.20 -0.03 2.38 16 21 C -0.22 -2.43 5.91 -104.43 -0.62 -3.05 16 22 C 0.01 0.10 12.16 -17.06 -0.21 -0.10 16 23 N -0.37 -4.88 12.07 30.35 0.37 -4.52 16 24 O 0.09 1.06 11.20 17.16 0.19 1.26 16 25 C -0.05 -0.43 12.26 29.74 0.36 -0.06 16 26 C 0.10 1.23 4.54 -3.31 -0.02 1.22 16 27 C 0.08 1.16 4.61 -4.37 -0.02 1.14 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H -0.01 -0.19 8.11 -51.93 -0.42 -0.61 16 30 H 0.03 0.76 7.70 -51.93 -0.40 0.36 16 31 H 0.09 1.71 6.43 -51.93 -0.33 1.38 16 32 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 33 H 0.06 0.73 4.75 -51.93 -0.25 0.48 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.49 7.55 -51.92 -0.39 0.09 16 36 H 0.09 0.85 8.04 -51.93 -0.42 0.43 16 37 H 0.10 0.96 7.81 -51.93 -0.41 0.55 16 38 H 0.10 1.17 7.80 -51.93 -0.40 0.77 16 39 H 0.10 1.23 7.93 -51.93 -0.41 0.82 16 40 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.19 2.20 8.06 -52.48 -0.42 1.78 16 42 H 0.22 1.20 8.06 -52.48 -0.42 0.78 16 43 H 0.13 1.81 5.25 -51.93 -0.27 1.53 16 44 H 0.06 0.57 7.18 -51.93 -0.37 0.20 16 45 H 0.04 0.68 7.72 -51.93 -0.40 0.28 16 46 H 0.07 1.24 7.20 -51.93 -0.37 0.87 16 LS Contribution 365.41 15.07 5.51 5.51 Total: -1.00 -31.12 365.41 -6.84 -37.96 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.47 Total: 1.18 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -0.85 Total: 1.65 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.06 Total: -47.74 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.06 Total: -13.76 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.12 -6.84 -37.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032529.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.387 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds