Wall clock time and date at job start Tue Mar 31 2020 19:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46577 * 180.02562 * 9 7 2 11 11 C 1.40424 * 111.00010 * 66.04804 * 10 9 7 12 12 C 1.54109 * 111.96792 * 188.31647 * 11 10 9 13 13 O 1.40644 * 109.12272 * 282.16287 * 12 11 10 14 14 C 1.44078 * 116.45477 * 93.87927 * 13 12 11 15 15 C 1.53440 * 112.40348 * 318.27353 * 14 13 12 16 16 C 1.54164 * 109.52722 * 194.30032 * 15 14 13 17 17 C 1.51405 * 104.08685 * 219.27579 * 16 15 14 18 18 O 1.21273 * 124.94537 * 195.83566 * 17 16 15 19 19 N 1.34494 * 110.10367 * 15.87158 * 17 16 15 20 20 C 1.46498 * 124.34910 * 180.44558 * 19 17 16 21 21 C 1.50698 * 109.47582 * 269.97829 * 20 19 17 22 22 C 1.41380 * 128.00807 * 89.99509 * 21 20 19 23 23 N 1.30168 * 106.39851 * 179.97438 * 22 21 20 24 24 O 1.20929 * 111.60479 * 0.02562 * 23 22 21 25 25 C 1.34044 * 111.56240 * 359.75735 * 24 23 22 26 26 C 1.46903 * 111.29354 * 0.43094 * 19 17 16 27 27 C 1.48028 * 110.99766 * 194.24409 * 10 9 7 28 28 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 30 30 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 31 31 H 1.08991 * 108.97851 * 308.95379 * 11 10 9 32 32 H 1.08998 * 108.98455 * 67.76128 * 11 10 9 33 33 H 1.08996 * 109.53335 * 42.06035 * 12 11 10 34 34 H 1.09005 * 109.52821 * 162.20313 * 12 11 10 35 35 H 1.09008 * 108.89591 * 79.02969 * 14 13 12 36 36 H 1.09000 * 108.89463 * 197.52081 * 14 13 12 37 37 H 1.09001 * 110.50743 * 337.92678 * 16 15 14 38 38 H 1.09000 * 110.50556 * 100.62754 * 16 15 14 39 39 H 1.08998 * 109.47103 * 29.98224 * 20 19 17 40 40 H 1.09004 * 109.46784 * 149.97932 * 20 19 17 41 41 H 1.08003 * 126.79875 * 359.97438 * 22 21 20 42 42 H 1.08005 * 126.77170 * 180.28865 * 25 24 23 43 43 H 1.09001 * 110.26355 * 224.35805 * 26 19 17 44 44 H 1.09001 * 110.34609 * 102.34915 * 26 19 17 45 45 H 1.08999 * 109.61287 * 274.28741 * 27 10 9 46 46 H 1.09004 * 109.61759 * 34.80827 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 7 2.2057 -3.6157 -0.0015 11 6 2.9363 -3.6528 1.1972 12 6 4.0819 -4.6822 1.1424 13 8 3.5513 -5.9721 1.3235 14 6 3.2276 -6.7068 0.1272 15 6 2.5516 -5.8283 -0.9338 16 6 1.9168 -6.7239 -2.0161 17 6 2.1924 -5.9890 -3.3108 18 8 1.6349 -6.2069 -4.3655 19 7 3.1461 -5.0599 -3.1210 20 6 3.6462 -4.1632 -4.1659 21 6 4.8147 -4.8087 -4.8651 22 6 4.7931 -5.6481 -6.0026 23 7 6.0313 -5.9654 -6.2487 24 8 6.7874 -5.4591 -5.4522 25 6 6.1292 -4.7151 -4.5522 26 6 3.6216 -5.0597 -1.7310 27 6 1.5326 -4.8892 -0.3426 28 1 -0.4849 0.8400 0.0004 29 1 0.6240 -2.5575 0.8880 30 1 0.6247 -2.5562 -0.8920 31 1 3.3560 -2.6651 1.3872 32 1 2.2642 -3.9154 2.0141 33 1 4.5773 -4.6248 0.1732 34 1 4.8016 -4.4688 1.9328 35 1 4.1446 -7.1226 -0.2907 36 1 2.5570 -7.5260 0.3867 37 1 2.3907 -7.7055 -2.0258 38 1 0.8434 -6.8187 -1.8519 39 1 2.8531 -3.9686 -4.8879 40 1 3.9662 -3.2234 -3.7157 41 1 3.9218 -5.9636 -6.5573 42 1 6.5616 -4.1531 -3.7376 43 1 3.7064 -4.0378 -1.3612 44 1 4.5834 -5.5676 -1.6594 45 1 1.1071 -5.3309 0.5585 46 1 0.7422 -4.7021 -1.0696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032529.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:11 Heat of formation + Delta-G solvation = -5.977674 kcal Electronic energy + Delta-G solvation = -30732.286076 eV Core-core repulsion = 26625.573130 eV Total energy + Delta-G solvation = -4106.712945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.95015 -42.19650 -40.05915 -37.44964 -37.37045 -36.11371 -34.60551 -34.03670 -32.67601 -30.61923 -29.76103 -28.56013 -28.13328 -26.93307 -25.58003 -24.07229 -23.75762 -22.74294 -21.89375 -20.69023 -20.26433 -18.94080 -18.61992 -18.55841 -17.77835 -17.55980 -17.01947 -16.79926 -16.47379 -16.35121 -16.22592 -15.70742 -15.61789 -15.07035 -14.82090 -14.66630 -14.43215 -14.22409 -14.05972 -14.01731 -13.46505 -13.42586 -13.18875 -13.11557 -12.85722 -12.58420 -12.47650 -12.25188 -12.22289 -12.10543 -11.94064 -11.62482 -11.57537 -11.30891 -11.20000 -10.87938 -10.58200 -10.46950 -10.31563 -9.74033 -8.89571 -8.16301 -6.26578 0.53760 1.13035 1.45829 1.47556 1.54999 1.56792 2.25081 2.41259 2.42598 2.93180 3.07456 3.18170 3.27567 3.35270 3.61780 3.66421 3.76351 3.92152 3.98559 4.08323 4.21182 4.26234 4.48191 4.52929 4.53236 4.59501 4.64409 4.68807 4.71593 4.75229 4.80807 4.84566 4.87962 4.98100 5.04089 5.08981 5.16029 5.24231 5.30732 5.34626 5.58720 5.68208 6.07662 6.16775 6.40973 6.46005 6.75691 6.92795 7.16474 7.27289 7.43816 8.94308 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009815 B = 0.004282 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.035524 B = 6537.606579 C = 7779.842334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.514 4.514 8 H 0.075 0.925 9 C 0.216 3.784 10 N -0.535 5.535 11 C 0.045 3.955 12 C 0.067 3.933 13 O -0.399 6.399 14 C 0.079 3.921 15 C -0.090 4.090 16 C -0.134 4.134 17 C 0.509 3.491 18 O -0.582 6.582 19 N -0.602 5.602 20 C 0.202 3.798 21 C -0.231 4.231 22 C -0.005 4.005 23 N -0.395 5.395 24 O 0.093 5.907 25 C -0.018 4.018 26 C 0.105 3.895 27 C 0.077 3.923 28 H 0.261 0.739 29 H -0.045 1.045 30 H -0.002 1.002 31 H 0.078 0.922 32 H -0.004 1.004 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.135 0.865 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.184 0.816 42 H 0.260 0.740 43 H 0.113 0.887 44 H 0.090 0.910 45 H 0.039 0.961 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.444 -12.182 -1.932 18.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.190 1.190 7 C -0.552 4.552 8 H 0.093 0.907 9 C 0.090 3.910 10 N -0.258 5.258 11 C -0.085 4.085 12 C -0.010 4.010 13 O -0.318 6.318 14 C 0.003 3.997 15 C -0.091 4.091 16 C -0.174 4.174 17 C 0.298 3.702 18 O -0.463 6.463 19 N -0.333 5.333 20 C 0.080 3.920 21 C -0.236 4.236 22 C -0.184 4.184 23 N -0.101 5.101 24 O 0.030 5.970 25 C -0.100 4.100 26 C -0.017 4.017 27 C -0.050 4.050 28 H 0.070 0.930 29 H -0.028 1.028 30 H 0.016 0.984 31 H 0.096 0.904 32 H 0.014 0.986 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.101 0.899 36 H 0.124 0.876 37 H 0.153 0.847 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.132 0.868 41 H 0.201 0.799 42 H 0.276 0.724 43 H 0.130 0.870 44 H 0.108 0.892 45 H 0.057 0.943 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.958 -12.874 -3.605 19.328 hybrid contribution -1.885 1.583 0.659 2.548 sum 12.074 -11.290 -2.945 16.790 Atomic orbital electron populations 1.70097 1.07997 1.27767 1.52047 1.25897 0.95523 1.03205 0.95032 0.85490 0.78099 0.78051 0.79307 1.18896 1.21981 1.19020 1.21432 0.93899 0.90401 1.49505 0.90672 1.19311 0.89911 0.88872 0.92906 1.59331 1.28042 1.03251 1.35202 1.21607 0.96413 1.00925 0.89510 1.22752 0.93840 0.80810 1.03605 1.87516 1.83539 1.28967 1.31753 1.23166 1.00020 0.92598 0.83933 1.21596 0.96232 0.95431 0.95883 1.22381 1.04297 1.00210 0.90497 1.21417 0.78421 0.80169 0.90207 1.90662 1.54382 1.69143 1.32064 1.48423 1.38252 1.35380 1.11262 1.19440 0.92079 0.91667 0.88841 1.21808 0.96886 1.05409 0.99527 1.25167 0.95648 0.99072 0.98475 1.73888 1.03319 1.19019 1.13830 1.84793 1.34066 1.47391 1.30784 1.26619 0.90992 0.96256 0.96157 1.22809 0.95949 1.04787 0.78107 1.21667 0.94937 0.89624 0.98806 0.92990 1.02774 0.98428 0.90398 0.98552 0.90073 0.87620 0.89864 0.87575 0.84741 0.87731 0.90539 0.86773 0.79877 0.72388 0.86958 0.89180 0.94320 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.76 13.29 21.45 0.28 -54.48 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.97 41.39 29.54 68.60 2.03 43.41 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.51 -26.24 8.35 25.60 0.21 -26.03 16 8 H 0.08 3.58 7.08 -2.91 -0.02 3.56 16 9 C 0.22 10.57 4.73 85.56 0.40 10.97 16 10 N -0.54 -19.27 2.23 -916.21 -2.05 -21.32 16 11 C 0.05 1.49 4.94 87.85 0.43 1.92 16 12 C 0.07 1.52 6.36 72.36 0.46 1.98 16 13 O -0.40 -9.19 10.18 -145.66 -1.48 -10.67 16 14 C 0.08 1.36 5.52 72.13 0.40 1.76 16 15 C -0.09 -1.95 0.58 -52.06 -0.03 -1.98 16 16 C -0.13 -2.79 5.73 30.47 0.17 -2.62 16 17 C 0.51 14.48 8.03 87.93 0.71 15.19 16 18 O -0.58 -21.11 17.60 -3.01 -0.05 -21.17 16 19 N -0.60 -14.79 2.92 -822.68 -2.40 -17.20 16 20 C 0.20 4.64 6.51 85.63 0.56 5.20 16 21 C -0.23 -4.76 5.91 -19.74 -0.12 -4.88 16 22 C 0.00 -0.12 12.16 85.71 1.04 0.92 16 23 N -0.40 -9.96 12.07 -59.27 -0.72 -10.68 16 24 O 0.09 1.89 11.20 71.59 0.80 2.70 16 25 C -0.02 -0.27 12.26 67.17 0.82 0.55 16 26 C 0.11 2.19 4.54 86.64 0.39 2.58 16 27 C 0.08 2.39 4.61 85.33 0.39 2.78 16 28 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 29 H -0.05 -2.53 8.11 -2.39 -0.02 -2.55 16 30 H 0.00 -0.13 7.70 -2.39 -0.02 -0.15 16 31 H 0.08 2.79 6.43 -2.39 -0.02 2.78 16 32 H 0.00 -0.14 8.10 -2.39 -0.02 -0.15 16 33 H 0.08 1.53 4.75 -2.39 -0.01 1.52 16 34 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.08 1.02 7.55 -2.38 -0.02 1.00 16 36 H 0.11 1.53 8.04 -2.39 -0.02 1.52 16 37 H 0.13 1.98 7.81 -2.39 -0.02 1.96 16 38 H 0.10 2.23 7.80 -2.39 -0.02 2.21 16 39 H 0.08 2.04 7.93 -2.39 -0.02 2.02 16 40 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.18 4.47 8.06 -2.91 -0.02 4.45 16 42 H 0.26 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.11 2.82 5.25 -2.39 -0.01 2.81 16 44 H 0.09 1.34 7.18 -2.39 -0.02 1.33 16 45 H 0.04 1.23 7.72 -2.39 -0.02 1.21 16 46 H 0.05 1.82 7.20 -2.39 -0.02 1.81 16 Total: -1.00 -71.69 365.41 3.73 -67.96 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 1.00 Total: 12.55 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 6.32 Total: 8.89 kcal Atomic # 7 Polarization: -98.79 SS G_CDS: -4.88 Total: -103.67 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.73 Total: -29.14 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Total: -71.69 3.73 -67.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032529.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.987 kcal (2) G-P(sol) polarization free energy of solvation -71.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds