Wall clock time and date at job start Tue Mar 31 2020 19:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00022 * 2 1 4 4 H 1.48502 * 109.47079 * 239.99978 * 3 2 1 5 5 H 1.48501 * 109.47112 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47325 * 120.00181 * 3 2 1 7 7 C 1.37875 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99849 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00180 * 359.97438 * 7 2 1 10 10 N 1.46908 * 109.47165 * 180.02562 * 9 7 2 11 11 C 1.44362 * 110.99702 * 66.87454 * 10 9 7 12 12 C 1.53862 * 112.32313 * 215.75420 * 11 10 9 13 13 O 1.44153 * 112.89815 * 318.35936 * 12 11 10 14 14 C 1.40375 * 117.09150 * 317.95768 * 13 12 11 15 15 C 1.54184 * 108.63647 * 92.95369 * 14 13 12 16 16 C 1.54577 * 108.34115 * 47.47160 * 15 14 13 17 17 C 1.51291 * 104.17680 * 139.14976 * 16 15 14 18 18 O 1.21278 * 124.93955 * 163.93501 * 17 16 15 19 19 N 1.34433 * 110.11559 * 343.93500 * 17 16 15 20 20 C 1.46496 * 124.34678 * 179.48322 * 19 17 16 21 21 C 1.50706 * 109.47389 * 90.02640 * 20 19 17 22 22 C 1.41370 * 128.00922 * 89.99580 * 21 20 19 23 23 N 1.30183 * 106.39684 * 179.97438 * 22 21 20 24 24 O 1.20928 * 111.60049 * 359.97438 * 23 22 21 25 25 C 1.34042 * 111.56749 * 359.76602 * 24 23 22 26 26 C 1.46792 * 111.30221 * 359.47921 * 19 17 16 27 27 C 1.46486 * 112.01329 * 282.72631 * 15 14 13 28 28 H 0.97002 * 120.00307 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47097 * 60.00332 * 9 7 2 30 30 H 1.09004 * 109.46890 * 299.99595 * 9 7 2 31 31 H 1.09005 * 108.90918 * 336.48263 * 11 10 9 32 32 H 1.08992 * 108.91145 * 95.01938 * 11 10 9 33 33 H 1.09003 * 108.79720 * 79.24492 * 12 11 10 34 34 H 1.09000 * 108.79502 * 197.47905 * 12 11 10 35 35 H 1.08998 * 109.60861 * 333.20390 * 14 13 12 36 36 H 1.09005 * 109.60994 * 212.70215 * 14 13 12 37 37 H 1.09003 * 110.48668 * 257.82595 * 16 15 14 38 38 H 1.09001 * 110.48907 * 20.47506 * 16 15 14 39 39 H 1.09002 * 109.47126 * 210.02141 * 20 19 17 40 40 H 1.09000 * 109.47400 * 330.01914 * 20 19 17 41 41 H 1.07997 * 126.80826 * 359.94366 * 22 21 20 42 42 H 1.07996 * 126.77754 * 180.28898 * 25 24 23 43 43 H 1.09003 * 110.25317 * 258.02354 * 26 19 17 44 44 H 1.08998 * 110.25385 * 136.01637 * 26 19 17 45 45 H 1.09004 * 108.93958 * 181.54536 * 27 15 14 46 46 H 1.09000 * 108.94183 * 300.24561 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 2.9440 -3.6650 1.2389 12 6 4.4015 -4.1132 1.0334 13 8 4.5271 -5.1996 0.0944 14 6 3.5817 -6.2335 0.1826 15 6 2.4192 -5.9216 -0.7810 16 6 3.0159 -5.5192 -2.1490 17 6 2.1192 -6.2004 -3.1593 18 8 2.0685 -5.9259 -4.3395 19 7 1.3867 -7.1541 -2.5584 20 6 0.4064 -7.9989 -3.2451 21 6 1.0859 -9.2431 -3.7563 22 6 1.2524 -10.4797 -3.0917 23 7 1.8949 -11.2562 -3.9157 24 8 2.1394 -10.6941 -4.9580 25 6 1.6728 -9.4375 -4.9615 26 6 1.6954 -7.2404 -1.1259 27 6 1.5161 -4.9029 -0.2403 28 1 -0.4851 0.8400 -0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8898 31 1 2.9399 -2.6737 1.6922 32 1 2.4518 -4.3631 1.9159 33 1 4.9817 -3.2653 0.6693 34 1 4.8103 -4.4294 1.9931 35 1 3.2039 -6.2976 1.2030 36 1 4.0460 -7.1789 -0.0981 37 1 2.9817 -4.4372 -2.2766 38 1 4.0393 -5.8830 -2.2407 39 1 -0.3847 -8.2771 -2.5487 40 1 -0.0235 -7.4494 -4.0825 41 1 0.9141 -10.7305 -2.0972 42 1 1.7510 -8.7209 -5.7657 43 1 2.3485 -8.0912 -0.9312 44 1 0.7764 -7.3291 -0.5465 45 1 0.7014 -4.7417 -0.9463 46 1 1.1015 -5.2616 0.7018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:14 Heat of formation + Delta-G solvation = 8.544727 kcal Electronic energy + Delta-G solvation = -30093.969385 eV Core-core repulsion = 25987.886178 eV Total energy + Delta-G solvation = -4106.083207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.17212 -40.97834 -38.77263 -36.39856 -35.89585 -35.18274 -33.17029 -32.52909 -31.79478 -29.21377 -28.57211 -27.46618 -26.77722 -25.74058 -24.37786 -23.20406 -22.27792 -21.82241 -20.16478 -19.57998 -19.55818 -18.13449 -17.77070 -16.74853 -16.55029 -16.30237 -16.08426 -15.67887 -15.29060 -15.08601 -14.68182 -14.48758 -14.21527 -13.91346 -13.76110 -13.49998 -13.29440 -13.20934 -12.92976 -12.81743 -12.39133 -12.29373 -11.87343 -11.50968 -11.41507 -11.28220 -11.15690 -10.94213 -10.68208 -10.66981 -10.64417 -10.48479 -10.30599 -9.96802 -9.88003 -9.48809 -9.32975 -9.12833 -8.86733 -8.51127 -7.41568 -6.09896 -4.11992 1.22572 1.89251 2.71825 3.00082 3.12073 3.29507 3.34494 3.37264 3.90388 4.01543 4.32399 4.34453 4.45986 4.52851 4.67639 4.74849 4.88202 4.91129 5.03300 5.25213 5.25947 5.29110 5.34903 5.40270 5.45748 5.47498 5.50323 5.59105 5.61681 5.72733 5.84470 5.85769 5.95946 6.06119 6.27952 6.38261 6.41789 6.44988 6.54620 7.08707 7.14819 7.20491 7.61897 7.71338 7.96926 7.99024 8.10388 8.26774 8.40865 8.95458 9.52926 11.00677 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018483 B = 0.002952 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.502452 B = 9483.449561 C =10175.853475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.197 3.803 10 N -0.522 5.522 11 C 0.028 3.972 12 C 0.073 3.927 13 O -0.376 6.376 14 C 0.086 3.914 15 C -0.092 4.092 16 C -0.123 4.123 17 C 0.521 3.479 18 O -0.535 6.535 19 N -0.619 5.619 20 C 0.203 3.797 21 C -0.226 4.226 22 C 0.002 3.998 23 N -0.369 5.369 24 O 0.093 5.907 25 C -0.031 4.031 26 C 0.116 3.884 27 C 0.068 3.932 28 H 0.263 0.737 29 H 0.031 0.969 30 H -0.009 1.009 31 H 0.095 0.905 32 H 0.022 0.978 33 H 0.091 0.909 34 H 0.042 0.958 35 H 0.049 0.951 36 H 0.081 0.919 37 H 0.122 0.878 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.189 0.811 42 H 0.218 0.782 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.250 -18.868 -0.923 19.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.073 3.927 10 N -0.246 5.246 11 C -0.101 4.101 12 C -0.004 4.004 13 O -0.293 6.293 14 C 0.008 3.992 15 C -0.094 4.094 16 C -0.163 4.163 17 C 0.311 3.689 18 O -0.411 6.411 19 N -0.354 5.354 20 C 0.080 3.920 21 C -0.232 4.232 22 C -0.178 4.178 23 N -0.073 5.073 24 O 0.030 5.970 25 C -0.114 4.114 26 C -0.008 4.008 27 C -0.060 4.060 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.008 0.992 31 H 0.113 0.887 32 H 0.040 0.960 33 H 0.109 0.891 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.140 0.860 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.206 0.794 42 H 0.235 0.765 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.927 -19.792 -2.035 20.110 hybrid contribution -0.918 1.544 1.188 2.154 sum 2.009 -18.248 -0.848 18.377 Atomic orbital electron populations 1.69938 1.06101 1.27039 1.50581 1.24976 0.94847 0.99349 0.95266 0.86557 0.79454 0.82681 0.78718 1.20042 1.21379 1.20276 1.21087 0.93505 0.89769 1.50564 0.91787 1.19792 0.89854 0.86912 0.96143 1.61334 1.27976 1.02118 1.33159 1.22375 0.93746 1.02380 0.91637 1.23127 0.97153 0.88913 0.91182 1.87398 1.51206 1.31945 1.58787 1.22309 0.89053 0.90523 0.97313 1.21095 0.96931 0.94223 0.97131 1.22250 0.98629 1.04428 0.90986 1.21364 0.80152 0.78816 0.88577 1.90675 1.67717 1.66379 1.16332 1.48356 1.41222 1.36071 1.09757 1.19423 0.88928 0.85878 0.97775 1.21895 1.07774 0.98212 0.95285 1.24978 1.00322 0.90650 1.01824 1.73890 1.17037 1.21940 0.94473 1.84833 1.58942 1.22655 1.30597 1.26050 0.97350 0.87260 1.00732 1.22137 1.00349 0.97548 0.80774 1.20890 0.95197 0.90658 0.99262 0.92781 0.95104 0.99154 0.88669 0.95996 0.89128 0.93974 0.93282 0.90074 0.85980 0.87896 0.88871 0.88516 0.79401 0.76512 0.91050 0.90313 0.91304 0.95135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.83 13.29 55.43 0.74 -25.09 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.51 -13.55 8.11 -34.44 -0.28 -13.83 16 8 H 0.06 1.67 7.60 -52.48 -0.40 1.28 16 9 C 0.20 4.78 4.60 -4.97 -0.02 4.76 16 10 N -0.52 -10.03 3.79 -240.56 -0.91 -10.94 16 11 C 0.03 0.48 4.82 -4.73 -0.02 0.46 16 12 C 0.07 1.07 7.01 37.61 0.26 1.33 16 13 O -0.38 -5.46 9.26 -33.80 -0.31 -5.77 16 14 C 0.09 1.01 5.15 37.78 0.19 1.20 16 15 C -0.09 -1.16 0.62 -155.47 -0.10 -1.25 16 16 C -0.12 -1.81 5.27 -26.76 -0.14 -1.95 16 17 C 0.52 7.80 8.02 -10.85 -0.09 7.71 16 18 O -0.53 -9.71 17.60 5.56 0.10 -9.61 16 19 N -0.62 -7.02 2.92 -173.85 -0.51 -7.53 16 20 C 0.20 1.85 6.51 -5.19 -0.03 1.81 16 21 C -0.23 -2.10 5.91 -104.42 -0.62 -2.72 16 22 C 0.00 0.02 12.16 -17.06 -0.21 -0.19 16 23 N -0.37 -4.17 12.07 30.36 0.37 -3.80 16 24 O 0.09 1.00 11.20 17.17 0.19 1.19 16 25 C -0.03 -0.29 12.26 29.74 0.36 0.07 16 26 C 0.12 1.11 6.47 -3.18 -0.02 1.09 16 27 C 0.07 1.06 3.78 -6.34 -0.02 1.04 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.03 0.82 7.80 -51.93 -0.41 0.42 16 30 H -0.01 -0.24 8.11 -51.93 -0.42 -0.66 16 31 H 0.10 1.83 6.64 -51.93 -0.34 1.48 16 32 H 0.02 0.34 6.73 -51.93 -0.35 -0.01 16 33 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.53 7.15 -51.93 -0.37 0.16 16 36 H 0.08 0.79 7.53 -51.93 -0.39 0.40 16 37 H 0.12 2.21 7.47 -51.93 -0.39 1.82 16 38 H 0.10 1.45 7.50 -51.93 -0.39 1.06 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.94 7.93 -51.93 -0.41 0.53 16 41 H 0.19 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.22 1.62 8.06 -52.49 -0.42 1.19 16 43 H 0.07 0.57 7.38 -51.93 -0.38 0.19 16 44 H 0.08 0.64 7.92 -51.93 -0.41 0.22 16 45 H 0.07 1.17 7.64 -51.93 -0.40 0.77 16 46 H 0.03 0.44 7.42 -51.93 -0.39 0.06 16 LS Contribution 370.79 15.07 5.59 5.59 Total: -1.00 -32.13 370.79 -7.29 -39.42 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.70 Total: -0.49 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -0.83 Total: 1.01 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: -0.32 Total: -47.36 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.02 Total: -14.18 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.13 -7.29 -39.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.964 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds