Wall clock time and date at job start Tue Mar 31 2020 19:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00022 * 2 1 4 4 H 1.48502 * 109.47079 * 239.99978 * 3 2 1 5 5 H 1.48501 * 109.47112 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47325 * 120.00181 * 3 2 1 7 7 C 1.37875 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99849 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00180 * 359.97438 * 7 2 1 10 10 N 1.46908 * 109.47165 * 180.02562 * 9 7 2 11 11 C 1.44362 * 110.99702 * 66.87454 * 10 9 7 12 12 C 1.53862 * 112.32313 * 215.75420 * 11 10 9 13 13 O 1.44153 * 112.89815 * 318.35936 * 12 11 10 14 14 C 1.40375 * 117.09150 * 317.95768 * 13 12 11 15 15 C 1.54184 * 108.63647 * 92.95369 * 14 13 12 16 16 C 1.54577 * 108.34115 * 47.47160 * 15 14 13 17 17 C 1.51291 * 104.17680 * 139.14976 * 16 15 14 18 18 O 1.21278 * 124.93955 * 163.93501 * 17 16 15 19 19 N 1.34433 * 110.11559 * 343.93500 * 17 16 15 20 20 C 1.46496 * 124.34678 * 179.48322 * 19 17 16 21 21 C 1.50706 * 109.47389 * 90.02640 * 20 19 17 22 22 C 1.41370 * 128.00922 * 89.99580 * 21 20 19 23 23 N 1.30183 * 106.39684 * 179.97438 * 22 21 20 24 24 O 1.20928 * 111.60049 * 359.97438 * 23 22 21 25 25 C 1.34042 * 111.56749 * 359.76602 * 24 23 22 26 26 C 1.46792 * 111.30221 * 359.47921 * 19 17 16 27 27 C 1.46486 * 112.01329 * 282.72631 * 15 14 13 28 28 H 0.97002 * 120.00307 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47097 * 60.00332 * 9 7 2 30 30 H 1.09004 * 109.46890 * 299.99595 * 9 7 2 31 31 H 1.09005 * 108.90918 * 336.48263 * 11 10 9 32 32 H 1.08992 * 108.91145 * 95.01938 * 11 10 9 33 33 H 1.09003 * 108.79720 * 79.24492 * 12 11 10 34 34 H 1.09000 * 108.79502 * 197.47905 * 12 11 10 35 35 H 1.08998 * 109.60861 * 333.20390 * 14 13 12 36 36 H 1.09005 * 109.60994 * 212.70215 * 14 13 12 37 37 H 1.09003 * 110.48668 * 257.82595 * 16 15 14 38 38 H 1.09001 * 110.48907 * 20.47506 * 16 15 14 39 39 H 1.09002 * 109.47126 * 210.02141 * 20 19 17 40 40 H 1.09000 * 109.47400 * 330.01914 * 20 19 17 41 41 H 1.07997 * 126.80826 * 359.94366 * 22 21 20 42 42 H 1.07996 * 126.77754 * 180.28898 * 25 24 23 43 43 H 1.09003 * 110.25317 * 258.02354 * 26 19 17 44 44 H 1.08998 * 110.25385 * 136.01637 * 26 19 17 45 45 H 1.09004 * 108.93958 * 181.54536 * 27 15 14 46 46 H 1.09000 * 108.94183 * 300.24561 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 2.9440 -3.6650 1.2389 12 6 4.4015 -4.1132 1.0334 13 8 4.5271 -5.1996 0.0944 14 6 3.5817 -6.2335 0.1826 15 6 2.4192 -5.9216 -0.7810 16 6 3.0159 -5.5192 -2.1490 17 6 2.1192 -6.2004 -3.1593 18 8 2.0685 -5.9259 -4.3395 19 7 1.3867 -7.1541 -2.5584 20 6 0.4064 -7.9989 -3.2451 21 6 1.0859 -9.2431 -3.7563 22 6 1.2524 -10.4797 -3.0917 23 7 1.8949 -11.2562 -3.9157 24 8 2.1394 -10.6941 -4.9580 25 6 1.6728 -9.4375 -4.9615 26 6 1.6954 -7.2404 -1.1259 27 6 1.5161 -4.9029 -0.2403 28 1 -0.4851 0.8400 -0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8898 31 1 2.9399 -2.6737 1.6922 32 1 2.4518 -4.3631 1.9159 33 1 4.9817 -3.2653 0.6693 34 1 4.8103 -4.4294 1.9931 35 1 3.2039 -6.2976 1.2030 36 1 4.0460 -7.1789 -0.0981 37 1 2.9817 -4.4372 -2.2766 38 1 4.0393 -5.8830 -2.2407 39 1 -0.3847 -8.2771 -2.5487 40 1 -0.0235 -7.4494 -4.0825 41 1 0.9141 -10.7305 -2.0972 42 1 1.7510 -8.7209 -5.7657 43 1 2.3485 -8.0912 -0.9312 44 1 0.7764 -7.3291 -0.5465 45 1 0.7014 -4.7417 -0.9463 46 1 1.1015 -5.2616 0.7018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:14 Heat of formation + Delta-G solvation = -13.713277 kcal Electronic energy + Delta-G solvation = -30094.934564 eV Core-core repulsion = 25987.886178 eV Total energy + Delta-G solvation = -4107.048386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.89975 -42.05784 -39.96731 -37.53022 -37.30722 -36.07307 -34.64902 -33.92872 -32.62873 -30.48196 -29.95797 -28.68745 -27.87377 -26.96601 -25.64811 -23.98691 -23.86653 -22.61964 -21.58610 -20.68461 -20.58303 -18.88288 -18.54175 -18.44751 -17.77651 -17.42722 -17.26793 -16.86975 -16.45061 -16.34856 -15.91878 -15.68384 -15.45377 -15.10933 -14.82483 -14.62845 -14.41076 -14.25789 -14.13525 -14.12417 -13.79265 -13.42944 -13.10732 -12.87452 -12.72365 -12.60308 -12.40899 -12.27947 -12.20131 -12.16343 -11.95373 -11.69311 -11.40358 -11.35603 -11.26363 -10.86311 -10.62504 -10.44236 -10.22548 -9.80885 -8.98250 -8.20585 -6.29966 0.48871 1.18663 1.40945 1.44078 1.51272 1.57326 2.20228 2.32756 2.39478 2.80775 3.12404 3.31650 3.34735 3.43806 3.68186 3.72237 3.82775 3.90024 3.99232 4.16536 4.20553 4.25286 4.38102 4.47627 4.59116 4.60569 4.64524 4.72734 4.73946 4.75642 4.78435 4.80076 4.87522 5.00636 5.08273 5.10770 5.15030 5.20779 5.29305 5.34115 5.57764 5.66440 6.05527 6.07236 6.36164 6.61369 6.64440 6.87313 7.16126 7.24820 7.39874 8.89774 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018483 B = 0.002952 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.502452 B = 9483.449561 C =10175.853475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.520 4.520 8 H 0.063 0.937 9 C 0.216 3.784 10 N -0.533 5.533 11 C 0.029 3.971 12 C 0.081 3.919 13 O -0.390 6.390 14 C 0.084 3.916 15 C -0.089 4.089 16 C -0.120 4.120 17 C 0.514 3.486 18 O -0.578 6.578 19 N -0.610 5.610 20 C 0.201 3.799 21 C -0.231 4.231 22 C 0.015 3.985 23 N -0.398 5.398 24 O 0.077 5.923 25 C -0.034 4.034 26 C 0.121 3.879 27 C 0.072 3.928 28 H 0.264 0.736 29 H -0.004 1.004 30 H -0.033 1.033 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.113 0.887 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.128 0.872 40 H 0.085 0.915 41 H 0.220 0.780 42 H 0.228 0.772 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.046 0.954 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 -20.963 0.853 21.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.194 4.194 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.559 4.559 8 H 0.081 0.919 9 C 0.090 3.910 10 N -0.257 5.257 11 C -0.101 4.101 12 C 0.004 3.996 13 O -0.308 6.308 14 C 0.006 3.994 15 C -0.090 4.090 16 C -0.160 4.160 17 C 0.303 3.697 18 O -0.458 6.458 19 N -0.342 5.342 20 C 0.080 3.920 21 C -0.236 4.236 22 C -0.164 4.164 23 N -0.106 5.106 24 O 0.017 5.983 25 C -0.116 4.116 26 C -0.002 4.002 27 C -0.056 4.056 28 H 0.072 0.928 29 H 0.014 0.986 30 H -0.015 1.015 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.130 0.870 37 H 0.097 0.903 38 H 0.127 0.873 39 H 0.146 0.854 40 H 0.104 0.896 41 H 0.237 0.763 42 H 0.244 0.756 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.064 0.936 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.652 -21.930 -0.244 22.233 hybrid contribution -1.187 2.149 0.637 2.536 sum 2.466 -19.781 0.393 19.938 Atomic orbital electron populations 1.70064 1.07659 1.27880 1.51830 1.25846 0.95655 1.03005 0.94937 0.85518 0.78221 0.78301 0.79099 1.19844 1.21102 1.18825 1.21420 0.93623 0.91011 1.49797 0.91860 1.19354 0.89853 0.88571 0.93213 1.61251 1.27129 1.02522 1.34764 1.22406 0.95413 1.01541 0.90712 1.23010 0.94817 0.89048 0.92725 1.87390 1.52088 1.32316 1.59042 1.22561 0.88257 0.90681 0.97896 1.21026 0.97224 0.94813 0.95941 1.22101 0.99365 1.01804 0.92712 1.21425 0.80640 0.79623 0.87999 1.90643 1.69248 1.67917 1.18027 1.48392 1.40335 1.34999 1.10514 1.19614 0.88945 0.85219 0.98271 1.21908 1.08004 0.98386 0.95285 1.25461 0.98623 0.89795 1.02523 1.73892 1.18630 1.22972 0.95093 1.84817 1.59532 1.23090 1.30853 1.26389 0.96799 0.87043 1.01419 1.22317 1.01974 0.96345 0.79553 1.20933 0.95257 0.89691 0.99704 0.92764 0.98619 1.01547 0.91486 0.93958 0.90660 0.90667 0.91483 0.86955 0.90268 0.87317 0.85413 0.89643 0.76299 0.75611 0.87779 0.87611 0.93570 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.39 13.29 21.45 0.28 -55.10 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.52 -28.51 8.11 25.60 0.21 -28.31 16 8 H 0.06 3.40 7.60 -2.91 -0.02 3.38 16 9 C 0.22 10.97 4.60 85.56 0.39 11.36 16 10 N -0.53 -20.81 3.79 -915.00 -3.47 -24.28 16 11 C 0.03 0.95 4.82 87.07 0.42 1.37 16 12 C 0.08 2.21 7.01 72.27 0.51 2.72 16 13 O -0.39 -10.36 9.26 -143.86 -1.33 -11.70 16 14 C 0.08 1.62 5.15 72.38 0.37 1.99 16 15 C -0.09 -2.02 0.62 -52.80 -0.03 -2.05 16 16 C -0.12 -3.50 5.27 30.57 0.16 -3.34 16 17 C 0.51 15.28 8.02 87.90 0.71 15.98 16 18 O -0.58 -21.67 17.60 -3.02 -0.05 -21.72 16 19 N -0.61 -12.41 2.92 -822.51 -2.40 -14.81 16 20 C 0.20 3.16 6.51 85.64 0.56 3.71 16 21 C -0.23 -3.72 5.91 -19.74 -0.12 -3.84 16 22 C 0.02 0.23 12.16 85.71 1.04 1.27 16 23 N -0.40 -8.26 12.07 -59.25 -0.72 -8.97 16 24 O 0.08 1.58 11.20 71.61 0.80 2.38 16 25 C -0.03 -0.60 12.26 67.18 0.82 0.22 16 26 C 0.12 1.80 6.47 86.78 0.56 2.36 16 27 C 0.07 2.17 3.78 84.09 0.32 2.49 16 28 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 29 H 0.00 -0.25 7.80 -2.39 -0.02 -0.26 16 30 H -0.03 -1.80 8.11 -2.38 -0.02 -1.82 16 31 H 0.07 2.61 6.64 -2.38 -0.02 2.59 16 32 H 0.04 1.22 6.73 -2.39 -0.02 1.20 16 33 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.11 7.15 -2.39 -0.02 1.09 16 36 H 0.11 1.55 7.53 -2.38 -0.02 1.53 16 37 H 0.08 3.03 7.47 -2.39 -0.02 3.01 16 38 H 0.11 2.99 7.50 -2.39 -0.02 2.97 16 39 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.09 1.58 7.93 -2.39 -0.02 1.56 16 41 H 0.22 1.67 8.06 -2.91 -0.02 1.64 16 42 H 0.23 3.34 8.06 -2.91 -0.02 3.32 16 43 H 0.10 1.02 7.38 -2.39 -0.02 1.00 16 44 H 0.11 1.12 7.92 -2.39 -0.02 1.11 16 45 H 0.05 1.59 7.64 -2.38 -0.02 1.57 16 46 H 0.05 1.32 7.42 -2.39 -0.02 1.31 16 Total: -1.00 -74.31 370.79 2.52 -71.78 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.99 Total: 10.00 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 6.38 Total: 6.62 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -6.29 Total: -103.16 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.58 Total: -31.04 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -74.31 2.52 -71.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.070 kcal (2) G-P(sol) polarization free energy of solvation -74.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds