Wall clock time and date at job start Tue Mar 31 2020 19:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99934 * 2 1 4 4 H 1.48501 * 109.47156 * 240.00112 * 3 2 1 5 5 H 1.48493 * 109.47168 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46734 * 120.00508 * 3 2 1 7 7 C 1.37883 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00139 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99648 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46880 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.46672 * 179.97438 * 10 9 7 12 12 C 1.48574 * 111.00323 * 307.41042 * 11 10 9 13 13 C 1.55042 * 103.29201 * 200.56258 * 12 11 10 14 14 C 1.54129 * 102.80648 * 37.01534 * 13 12 11 15 15 C 1.48040 * 110.99614 * 189.99997 * 11 10 9 16 16 C 1.52604 * 110.31788 * 219.00620 * 14 13 12 17 17 N 1.46207 * 109.84491 * 286.54611 * 16 14 13 18 18 C 1.46500 * 118.77374 * 162.26039 * 17 16 14 19 19 C 1.50696 * 109.47279 * 269.73679 * 18 17 16 20 20 C 1.41380 * 128.00547 * 89.99795 * 19 18 17 21 21 N 1.30173 * 106.39466 * 179.76122 * 20 19 18 22 22 O 1.20921 * 111.60761 * 0.24442 * 21 20 19 23 23 C 1.34044 * 111.56503 * 359.97438 * 22 21 20 24 24 C 1.33847 * 122.44883 * 341.98944 * 17 16 14 25 25 O 1.21280 * 118.69445 * 182.69614 * 24 17 16 26 26 C 1.50304 * 122.60785 * 2.67610 * 24 17 16 27 27 O 1.42575 * 110.03726 * 97.49415 * 14 13 12 28 28 H 0.96998 * 120.00134 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.47723 * 59.99658 * 9 7 2 30 30 H 1.09002 * 109.46729 * 299.99603 * 9 7 2 31 31 H 1.08995 * 109.47175 * 59.99818 * 10 9 7 32 32 H 1.08999 * 109.46740 * 299.99755 * 10 9 7 33 33 H 1.08999 * 110.65738 * 319.01403 * 12 11 10 34 34 H 1.08997 * 110.65706 * 81.94860 * 12 11 10 35 35 H 1.09001 * 110.74699 * 278.68911 * 13 12 11 36 36 H 1.09000 * 110.74979 * 155.34653 * 13 12 11 37 37 H 1.09005 * 109.98027 * 26.39503 * 15 11 10 38 38 H 1.09004 * 110.00821 * 265.12741 * 15 11 10 39 39 H 1.09005 * 109.58426 * 166.34704 * 16 14 13 40 40 H 1.08996 * 109.29530 * 46.57308 * 16 14 13 41 41 H 1.09003 * 109.46798 * 149.73562 * 18 17 16 42 42 H 1.09001 * 109.46750 * 29.73734 * 18 17 16 43 43 H 1.08002 * 126.80618 * 0.03125 * 20 19 18 44 44 H 1.07999 * 126.77881 * 180.02562 * 23 22 21 45 45 H 1.08998 * 109.39992 * 103.70880 * 26 24 17 46 46 H 1.09003 * 109.39568 * 223.53082 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9342 0.0001 12 6 0.5151 -4.9737 1.1022 13 6 0.2476 -6.4896 1.2868 14 6 1.6375 -7.1129 1.0515 15 6 2.4243 -6.0741 0.2401 16 6 1.5082 -8.4149 0.2661 17 7 0.9678 -9.4638 1.1295 18 6 0.3971 -10.6625 0.5101 19 6 -1.0748 -10.4498 0.2665 20 6 -1.6982 -9.9134 -0.8835 21 7 -2.9782 -9.9253 -0.6468 22 8 -3.2242 -10.3726 0.4494 23 6 -2.1065 -10.7257 1.0996 24 6 0.9800 -9.3720 2.4647 25 8 0.5585 -10.3040 3.1163 26 6 1.4956 -8.1599 3.1886 27 8 2.2802 -7.3592 2.3001 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8901 30 1 0.6248 -2.5570 0.8897 31 1 2.8720 -3.6043 0.8894 32 1 2.8719 -3.6043 -0.8906 33 1 0.9320 -4.5431 2.0126 34 1 -0.3976 -4.4519 0.8146 35 1 -0.4669 -6.8487 0.5460 36 1 -0.1036 -6.6996 2.2970 37 1 3.2946 -5.7412 0.8057 38 1 2.7404 -6.5052 -0.7099 39 1 2.4884 -8.7184 -0.1020 40 1 0.8376 -8.2606 -0.5792 41 1 0.5359 -11.5157 1.1742 42 1 0.8983 -10.8550 -0.4385 43 1 -1.2097 -9.5669 -1.7822 44 1 -2.0417 -11.1504 2.0905 45 1 0.6542 -7.5732 3.5572 46 1 2.1128 -8.4759 4.0297 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040138.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:17 Heat of formation + Delta-G solvation = -15.854831 kcal Electronic energy + Delta-G solvation = -29774.107759 eV Core-core repulsion = 25666.966508 eV Total energy + Delta-G solvation = -4107.141251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.93166 -42.26409 -40.17118 -38.10476 -37.11616 -35.42963 -34.79181 -33.40351 -32.80749 -30.99810 -30.52814 -29.53348 -27.43797 -26.76056 -25.69944 -23.96943 -23.67935 -22.87931 -21.83319 -21.45544 -19.75111 -18.91155 -18.64977 -18.57426 -18.55469 -17.79976 -17.24353 -16.78555 -16.69611 -16.43609 -15.94456 -15.85014 -15.62609 -15.08990 -14.95832 -14.56888 -14.42891 -14.21977 -14.10650 -14.09424 -13.86730 -13.61971 -13.10424 -13.03981 -12.85256 -12.75510 -12.50143 -12.43425 -12.24094 -12.17806 -12.00794 -11.83613 -11.48848 -11.39347 -11.27261 -11.25145 -10.75378 -10.55536 -10.29053 -9.93243 -9.38502 -8.20582 -6.31873 0.49099 1.13333 1.38068 1.40456 1.43212 1.51121 1.93587 2.32957 2.37896 2.45050 3.11775 3.13173 3.16433 3.37073 3.45208 3.47532 3.62479 3.73454 3.94812 4.08294 4.16792 4.17929 4.24507 4.42108 4.44764 4.47690 4.53754 4.58601 4.62490 4.65191 4.68644 4.74380 4.78986 4.84484 4.95049 4.97729 5.04749 5.07964 5.22575 5.44324 5.60308 5.74957 5.77185 5.97209 6.08557 6.22261 6.28408 6.85072 6.89061 7.26541 7.37426 8.91082 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016972 B = 0.002659 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.342283 B =10526.113845 C =11422.729417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.033 3.967 10 C 0.070 3.930 11 N -0.519 5.519 12 C 0.044 3.956 13 C -0.138 4.138 14 C 0.098 3.902 15 C 0.051 3.949 16 C 0.103 3.897 17 N -0.593 5.593 18 C 0.188 3.812 19 C -0.228 4.228 20 C 0.006 3.994 21 N -0.400 5.400 22 O 0.078 5.922 23 C -0.032 4.032 24 C 0.492 3.508 25 O -0.569 6.569 26 C 0.043 3.957 27 O -0.368 6.368 28 H 0.263 0.737 29 H -0.007 1.007 30 H -0.006 1.006 31 H 0.023 0.977 32 H 0.071 0.929 33 H 0.032 0.968 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.126 0.874 43 H 0.212 0.788 44 H 0.233 0.767 45 H 0.097 0.903 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.947 -25.305 1.831 25.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.004 4.004 10 C -0.058 4.058 11 N -0.244 5.244 12 C -0.084 4.084 13 C -0.176 4.176 14 C 0.057 3.943 15 C -0.077 4.077 16 C -0.019 4.019 17 N -0.324 5.324 18 C 0.066 3.934 19 C -0.234 4.234 20 C -0.173 4.173 21 N -0.107 5.107 22 O 0.017 5.983 23 C -0.115 4.115 24 C 0.280 3.720 25 O -0.449 6.449 26 C -0.035 4.035 27 O -0.287 6.287 28 H 0.072 0.928 29 H 0.012 0.988 30 H 0.012 0.988 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.136 0.864 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.144 0.856 43 H 0.229 0.771 44 H 0.249 0.751 45 H 0.114 0.886 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.448 -25.260 1.000 25.321 hybrid contribution 0.840 1.262 1.120 1.885 sum 2.288 -23.998 2.120 24.200 Atomic orbital electron populations 1.70093 1.07811 1.27824 1.51410 1.25950 0.95723 1.03299 0.94645 0.85512 0.78277 0.78099 0.79235 1.18997 1.20968 1.19227 1.21607 0.93588 0.92269 1.50932 0.92053 1.18961 0.94234 0.92140 0.95088 1.22187 0.95741 0.88343 0.99541 1.64984 1.13770 1.02975 1.42661 1.23041 0.96469 0.96263 0.92641 1.23086 0.97068 0.94470 1.02996 1.22271 0.92466 0.94672 0.84856 1.22866 0.94623 0.90234 0.99972 1.22250 1.01848 0.84588 0.93256 1.47625 1.58829 1.20606 1.05379 1.19792 0.85247 0.87496 1.00843 1.21889 0.98866 1.07816 0.94787 1.25465 0.89131 1.00820 1.01914 1.73920 1.20055 1.17290 0.99441 1.84826 1.33775 1.58668 1.20983 1.26451 0.84220 1.00041 1.00750 1.21092 0.78314 0.89548 0.83014 1.90694 1.49347 1.39217 1.65692 1.22967 0.98641 0.88381 0.93545 1.88152 1.43121 1.71077 1.26322 0.92794 0.98840 0.98763 0.95845 0.91018 0.94954 0.91894 0.89477 0.89998 0.92463 0.86375 0.87707 0.87574 0.88148 0.85611 0.77098 0.75083 0.88559 0.83670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.55 -30.76 9.11 25.60 0.23 -30.53 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.03 1.73 4.63 29.85 0.14 1.87 16 10 C 0.07 2.82 4.97 86.30 0.43 3.25 16 11 N -0.52 -17.13 5.40 -883.30 -4.77 -21.90 16 12 C 0.04 1.44 5.11 86.68 0.44 1.89 16 13 C -0.14 -3.26 5.85 31.68 0.19 -3.07 16 14 C 0.10 1.95 0.98 -10.37 -0.01 1.94 16 15 C 0.05 1.21 6.17 86.25 0.53 1.74 16 16 C 0.10 1.37 5.08 86.30 0.44 1.81 16 17 N -0.59 -8.65 2.78 -829.57 -2.31 -10.96 16 18 C 0.19 2.11 5.91 85.63 0.51 2.62 16 19 C -0.23 -3.31 5.90 -19.74 -0.12 -3.42 16 20 C 0.01 0.10 12.16 85.71 1.04 1.14 16 21 N -0.40 -9.01 12.07 -59.26 -0.72 -9.72 16 22 O 0.08 1.62 11.20 71.60 0.80 2.43 16 23 C -0.03 -0.51 12.26 67.18 0.82 0.31 16 24 C 0.49 9.30 7.40 87.68 0.65 9.94 16 25 O -0.57 -13.28 16.34 -3.03 -0.05 -13.33 16 26 C 0.04 0.78 6.39 71.11 0.45 1.23 16 27 O -0.37 -7.82 10.31 -148.98 -1.54 -9.36 16 28 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 29 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 30 H -0.01 -0.33 6.79 -2.39 -0.02 -0.35 16 31 H 0.02 0.95 7.81 -2.39 -0.02 0.93 16 32 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.03 1.16 7.99 -2.39 -0.02 1.14 16 34 H 0.06 2.37 7.67 -2.39 -0.02 2.36 16 35 H 0.09 2.00 7.68 -2.39 -0.02 1.98 16 36 H 0.08 1.82 5.66 -2.39 -0.01 1.81 16 37 H 0.06 1.47 7.39 -2.38 -0.02 1.46 16 38 H 0.12 2.15 7.65 -2.38 -0.02 2.13 16 39 H 0.10 0.99 8.09 -2.38 -0.02 0.97 16 40 H 0.11 1.20 7.85 -2.39 -0.02 1.18 16 41 H 0.10 1.24 7.22 -2.39 -0.02 1.22 16 42 H 0.13 0.67 8.04 -2.39 -0.02 0.65 16 43 H 0.21 2.26 8.06 -2.91 -0.02 2.24 16 44 H 0.23 2.67 8.06 -2.91 -0.02 2.65 16 45 H 0.10 1.67 6.31 -2.39 -0.02 1.66 16 46 H 0.15 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -72.61 372.37 0.94 -71.67 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.99 Total: 10.29 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 6.21 Total: -8.72 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -7.51 Total: -98.91 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.78 Total: -20.26 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -72.61 0.94 -71.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040138.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.819 kcal (2) G-P(sol) polarization free energy of solvation -72.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds