Wall clock time and date at job start Tue Mar 31 2020 19:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46973 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46565 * 179.97438 * 10 9 7 12 12 C 1.48578 * 110.99785 * 52.59055 * 11 10 9 13 13 C 1.55054 * 103.28583 * 159.43502 * 12 11 10 14 14 C 1.54117 * 102.80674 * 322.97905 * 13 12 11 15 15 C 1.48042 * 110.99482 * 170.00057 * 11 10 9 16 16 C 1.52432 * 110.12555 * 140.95338 * 14 13 12 17 17 N 1.46200 * 109.94853 * 169.22168 * 16 14 13 18 18 C 1.46501 * 118.77107 * 162.48949 * 17 16 14 19 19 C 1.50697 * 109.47311 * 269.98263 * 18 17 16 20 20 C 1.41382 * 128.00587 * 269.67548 * 19 18 17 21 21 N 1.30178 * 106.39580 * 179.89543 * 20 19 18 22 22 O 1.20927 * 111.60177 * 0.39488 * 21 20 19 23 23 C 1.34041 * 111.56709 * 359.74198 * 22 21 20 24 24 C 1.33840 * 122.45763 * 342.47335 * 17 16 14 25 25 O 1.21284 * 118.70199 * 182.38191 * 24 17 16 26 26 C 1.50307 * 122.60153 * 2.39832 * 24 17 16 27 27 O 1.42581 * 110.05028 * 262.52626 * 14 13 12 28 28 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 30 30 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 31 31 H 1.08996 * 109.47332 * 299.99701 * 10 9 7 32 32 H 1.08996 * 109.46646 * 60.00565 * 10 9 7 33 33 H 1.08996 * 110.65497 * 277.88359 * 12 11 10 34 34 H 1.08999 * 110.66010 * 40.98896 * 12 11 10 35 35 H 1.08999 * 110.74160 * 204.64657 * 13 12 11 36 36 H 1.09000 * 110.89982 * 81.38214 * 13 12 11 37 37 H 1.08994 * 109.97711 * 333.61290 * 15 11 10 38 38 H 1.08996 * 109.97393 * 94.86064 * 15 11 10 39 39 H 1.08992 * 109.39345 * 289.37026 * 16 14 13 40 40 H 1.08996 * 109.39147 * 49.08153 * 16 14 13 41 41 H 1.09001 * 109.47058 * 29.98502 * 18 17 16 42 42 H 1.09003 * 109.46916 * 149.98026 * 18 17 16 43 43 H 1.08000 * 126.80359 * 0.04060 * 20 19 18 44 44 H 1.08000 * 126.77565 * 179.97438 * 23 22 21 45 45 H 1.09002 * 109.40005 * 223.41948 * 26 24 17 46 46 H 1.09005 * 109.32489 * 103.64080 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 7 5.4906 -2.6364 -0.0001 12 6 6.0230 -1.7937 1.1017 13 6 7.4698 -2.3202 1.2858 14 6 7.3145 -3.8354 1.0507 15 6 6.0212 -3.9975 0.2397 16 6 8.5065 -4.3691 0.2647 17 7 8.4889 -5.8310 0.2635 18 6 9.2928 -6.5450 -0.7317 19 6 8.4681 -6.7762 -1.9715 20 6 7.6459 -7.8854 -2.2759 21 7 7.1306 -7.6502 -3.4479 22 8 7.5109 -6.5941 -3.8977 23 6 8.3475 -5.9723 -3.0550 24 6 7.7662 -6.5414 1.1377 25 8 7.8358 -7.7518 1.1035 26 6 6.8713 -5.8986 2.1600 27 8 7.2065 -4.5152 2.2994 28 1 -0.4850 0.8400 -0.0004 29 1 3.8752 -0.6796 -0.8894 30 1 3.8746 -0.6807 0.8905 31 1 3.6580 -3.1505 0.8896 32 1 3.6587 -3.1500 -0.8904 33 1 6.0301 -0.7427 0.8130 34 1 5.4421 -1.9395 2.0124 35 1 7.8276 -2.1207 2.2959 36 1 8.1401 -1.8815 0.5466 37 1 5.2979 -4.5847 0.8055 38 1 6.2356 -4.4864 -0.7105 39 1 8.4553 -4.0057 -0.7615 40 1 9.4300 -4.0188 0.7256 41 1 10.1703 -5.9499 -0.9847 42 1 9.6100 -7.5040 -0.3221 43 1 7.4768 -8.7545 -1.6574 44 1 8.8306 -5.0188 -3.2096 45 1 6.9985 -6.4004 3.1193 46 1 5.8335 -5.9892 1.8389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040139.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:20 Heat of formation + Delta-G solvation = 9.800254 kcal Electronic energy + Delta-G solvation = -30082.386450 eV Core-core repulsion = 25976.357687 eV Total energy + Delta-G solvation = -4106.028763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.19202 -41.45859 -39.23110 -37.00537 -36.40963 -34.15701 -33.56139 -32.23435 -31.97093 -29.74504 -29.47056 -28.68730 -26.75254 -25.78326 -24.23254 -23.15151 -22.27244 -22.00054 -21.02908 -19.85881 -18.79758 -18.20934 -17.96727 -17.80339 -17.06784 -16.92523 -16.35198 -16.10115 -15.42701 -15.26404 -14.83114 -14.63147 -14.39763 -14.07286 -13.95335 -13.84229 -13.53306 -13.44443 -13.00149 -12.85255 -12.59775 -12.52250 -12.34141 -12.08273 -11.58059 -11.48740 -11.33309 -11.30024 -11.07210 -10.94880 -10.71067 -10.59116 -10.09239 -10.03615 -9.89985 -9.82703 -9.53452 -9.26943 -9.23251 -8.57864 -8.14112 -6.08204 -4.07164 1.16346 1.85588 2.16848 2.60837 2.98679 3.27593 3.27668 3.35658 3.39270 3.86919 4.03079 4.14196 4.30883 4.34201 4.38243 4.41673 4.50752 4.55417 4.79843 4.85014 4.98758 5.02998 5.09680 5.12407 5.24462 5.26117 5.32855 5.37107 5.38591 5.47412 5.64832 5.73547 5.75027 5.88696 5.90235 6.02535 6.12586 6.17822 6.56572 6.63880 6.92958 7.00766 7.09536 7.30193 7.47783 7.66194 7.77091 7.99835 8.48125 8.95452 9.53463 11.05178 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013631 B = 0.003182 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.617683 B = 8798.009399 C = 9736.431687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.523 4.523 8 H 0.070 0.930 9 C -0.009 4.009 10 C 0.061 3.939 11 N -0.513 5.513 12 C 0.037 3.963 13 C -0.106 4.106 14 C 0.090 3.910 15 C 0.012 3.988 16 C 0.099 3.901 17 N -0.600 5.600 18 C 0.187 3.813 19 C -0.226 4.226 20 C 0.009 3.991 21 N -0.365 5.365 22 O 0.100 5.900 23 C -0.041 4.041 24 C 0.494 3.506 25 O -0.540 6.540 26 C 0.045 3.955 27 O -0.355 6.355 28 H 0.264 0.736 29 H 0.025 0.975 30 H 0.013 0.987 31 H 0.029 0.971 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.190 0.810 44 H 0.216 0.784 45 H 0.133 0.867 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.330 -10.063 0.164 26.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.088 0.912 9 C -0.047 4.047 10 C -0.066 4.066 11 N -0.238 5.238 12 C -0.091 4.091 13 C -0.144 4.144 14 C 0.050 3.950 15 C -0.116 4.116 16 C -0.024 4.024 17 N -0.333 5.333 18 C 0.065 3.935 19 C -0.231 4.231 20 C -0.170 4.170 21 N -0.068 5.068 22 O 0.036 5.964 23 C -0.124 4.124 24 C 0.282 3.718 25 O -0.418 6.418 26 C -0.034 4.034 27 O -0.273 6.273 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.031 0.969 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.121 0.879 43 H 0.207 0.793 44 H 0.233 0.767 45 H 0.150 0.850 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 23.521 -10.959 -0.979 25.968 hybrid contribution 0.316 0.696 1.210 1.431 sum 23.837 -10.264 0.231 25.954 Atomic orbital electron populations 1.69912 1.06339 1.26972 1.50873 1.25000 0.94720 0.99182 0.94423 0.86768 0.80497 0.83518 0.78484 1.20312 1.21350 1.18782 1.21053 0.89311 0.94557 1.51272 0.91150 1.19612 0.96880 0.91371 0.96795 1.22341 0.83452 1.00733 1.00063 1.65008 1.10914 1.05602 1.42256 1.23255 0.92814 0.99162 0.93828 1.22502 0.98805 0.89797 1.03309 1.22373 0.93888 0.94502 0.84228 1.23487 0.95015 0.93717 0.99425 1.22162 0.99311 0.78776 1.02108 1.47600 1.46820 1.06842 1.32027 1.19610 0.90932 0.99503 0.83496 1.21744 1.05824 0.96358 0.99221 1.25057 0.96787 1.01363 0.93807 1.73938 1.19548 0.99986 1.13355 1.84865 1.46764 1.24346 1.40446 1.25920 0.95855 1.00317 0.90289 1.21019 0.80601 0.87898 0.82259 1.90720 1.64758 1.13914 1.72387 1.22847 0.98353 0.82358 0.99872 1.88158 1.90616 1.20265 1.28306 0.92666 0.95670 0.96919 0.95232 0.91227 0.89238 0.92899 0.89386 0.89036 0.92829 0.90210 0.89034 0.90164 0.88754 0.87914 0.79325 0.76736 0.84982 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 7 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.21 3.70 -27.88 -0.10 -0.31 16 10 C 0.06 1.20 4.96 -3.82 -0.02 1.18 16 11 N -0.51 -8.06 5.40 -230.53 -1.25 -9.31 16 12 C 0.04 0.52 5.11 -1.81 -0.01 0.51 16 13 C -0.11 -1.05 6.32 -25.06 -0.16 -1.21 16 14 C 0.09 0.93 0.96 -90.06 -0.09 0.84 16 15 C 0.01 0.16 5.39 -2.93 -0.02 0.14 16 16 C 0.10 0.75 4.99 -4.49 -0.02 0.73 16 17 N -0.60 -5.28 2.79 -176.09 -0.49 -5.77 16 18 C 0.19 1.35 5.90 -5.19 -0.03 1.32 16 19 C -0.23 -1.95 5.90 -104.42 -0.62 -2.57 16 20 C 0.01 0.10 12.16 -17.06 -0.21 -0.11 16 21 N -0.36 -4.58 12.07 30.36 0.37 -4.21 16 22 O 0.10 1.09 11.20 17.17 0.19 1.28 16 23 C -0.04 -0.31 12.26 29.74 0.36 0.06 16 24 C 0.49 5.49 7.43 -11.59 -0.09 5.41 16 25 O -0.54 -7.35 16.34 5.55 0.09 -7.26 16 26 C 0.04 0.46 6.42 35.82 0.23 0.69 16 27 O -0.36 -3.97 10.34 -35.23 -0.36 -4.33 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.02 0.60 7.20 -51.93 -0.37 0.22 16 30 H 0.01 0.29 6.22 -51.93 -0.32 -0.04 16 31 H 0.03 0.59 7.82 -51.93 -0.41 0.19 16 32 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.09 1.28 7.68 -51.93 -0.40 0.88 16 34 H 0.05 0.81 7.99 -51.93 -0.41 0.39 16 35 H 0.09 0.80 8.06 -51.93 -0.42 0.38 16 36 H 0.09 0.72 7.85 -51.93 -0.41 0.32 16 37 H 0.05 0.76 5.62 -51.93 -0.29 0.46 16 38 H 0.08 1.03 7.62 -51.93 -0.40 0.64 16 39 H 0.09 0.58 7.98 -51.93 -0.41 0.17 16 40 H 0.08 0.48 8.11 -51.93 -0.42 0.06 16 41 H 0.09 0.39 8.04 -51.93 -0.42 -0.03 16 42 H 0.10 0.83 7.22 -51.93 -0.38 0.46 16 43 H 0.19 1.95 8.06 -52.49 -0.42 1.53 16 44 H 0.22 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.09 0.98 6.53 -51.93 -0.34 0.64 16 LS Contribution 369.59 15.07 5.57 5.57 Total: -1.00 -34.35 369.59 -7.64 -41.99 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.67 Total: -1.17 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -1.19 Total: -6.54 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.60 Total: -46.20 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -0.08 Total: -10.31 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.35 -7.64 -41.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040139.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.794 kcal (2) G-P(sol) polarization free energy of solvation -34.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds