Wall clock time and date at job start Tue Mar 31 2020 19:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46973 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46565 * 179.97438 * 10 9 7 12 12 C 1.48578 * 110.99785 * 52.59055 * 11 10 9 13 13 C 1.55054 * 103.28583 * 159.43502 * 12 11 10 14 14 C 1.54117 * 102.80674 * 322.97905 * 13 12 11 15 15 C 1.48042 * 110.99482 * 170.00057 * 11 10 9 16 16 C 1.52432 * 110.12555 * 140.95338 * 14 13 12 17 17 N 1.46200 * 109.94853 * 169.22168 * 16 14 13 18 18 C 1.46501 * 118.77107 * 162.48949 * 17 16 14 19 19 C 1.50697 * 109.47311 * 269.98263 * 18 17 16 20 20 C 1.41382 * 128.00587 * 269.67548 * 19 18 17 21 21 N 1.30178 * 106.39580 * 179.89543 * 20 19 18 22 22 O 1.20927 * 111.60177 * 0.39488 * 21 20 19 23 23 C 1.34041 * 111.56709 * 359.74198 * 22 21 20 24 24 C 1.33840 * 122.45763 * 342.47335 * 17 16 14 25 25 O 1.21284 * 118.70199 * 182.38191 * 24 17 16 26 26 C 1.50307 * 122.60153 * 2.39832 * 24 17 16 27 27 O 1.42581 * 110.05028 * 262.52626 * 14 13 12 28 28 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 30 30 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 31 31 H 1.08996 * 109.47332 * 299.99701 * 10 9 7 32 32 H 1.08996 * 109.46646 * 60.00565 * 10 9 7 33 33 H 1.08996 * 110.65497 * 277.88359 * 12 11 10 34 34 H 1.08999 * 110.66010 * 40.98896 * 12 11 10 35 35 H 1.08999 * 110.74160 * 204.64657 * 13 12 11 36 36 H 1.09000 * 110.89982 * 81.38214 * 13 12 11 37 37 H 1.08994 * 109.97711 * 333.61290 * 15 11 10 38 38 H 1.08996 * 109.97393 * 94.86064 * 15 11 10 39 39 H 1.08992 * 109.39345 * 289.37026 * 16 14 13 40 40 H 1.08996 * 109.39147 * 49.08153 * 16 14 13 41 41 H 1.09001 * 109.47058 * 29.98502 * 18 17 16 42 42 H 1.09003 * 109.46916 * 149.98026 * 18 17 16 43 43 H 1.08000 * 126.80359 * 0.04060 * 20 19 18 44 44 H 1.08000 * 126.77565 * 179.97438 * 23 22 21 45 45 H 1.09002 * 109.40005 * 223.41948 * 26 24 17 46 46 H 1.09005 * 109.32489 * 103.64080 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 7 5.4906 -2.6364 -0.0001 12 6 6.0230 -1.7937 1.1017 13 6 7.4698 -2.3202 1.2858 14 6 7.3145 -3.8354 1.0507 15 6 6.0212 -3.9975 0.2397 16 6 8.5065 -4.3691 0.2647 17 7 8.4889 -5.8310 0.2635 18 6 9.2928 -6.5450 -0.7317 19 6 8.4681 -6.7762 -1.9715 20 6 7.6459 -7.8854 -2.2759 21 7 7.1306 -7.6502 -3.4479 22 8 7.5109 -6.5941 -3.8977 23 6 8.3475 -5.9723 -3.0550 24 6 7.7662 -6.5414 1.1377 25 8 7.8358 -7.7518 1.1035 26 6 6.8713 -5.8986 2.1600 27 8 7.2065 -4.5152 2.2994 28 1 -0.4850 0.8400 -0.0004 29 1 3.8752 -0.6796 -0.8894 30 1 3.8746 -0.6807 0.8905 31 1 3.6580 -3.1505 0.8896 32 1 3.6587 -3.1500 -0.8904 33 1 6.0301 -0.7427 0.8130 34 1 5.4421 -1.9395 2.0124 35 1 7.8276 -2.1207 2.2959 36 1 8.1401 -1.8815 0.5466 37 1 5.2979 -4.5847 0.8055 38 1 6.2356 -4.4864 -0.7105 39 1 8.4553 -4.0057 -0.7615 40 1 9.4300 -4.0188 0.7256 41 1 10.1703 -5.9499 -0.9847 42 1 9.6100 -7.5040 -0.3221 43 1 7.4768 -8.7545 -1.6574 44 1 8.8306 -5.0188 -3.2096 45 1 6.9985 -6.4004 3.1193 46 1 5.8335 -5.9892 1.8389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040139.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:19 Heat of formation + Delta-G solvation = -16.290377 kcal Electronic energy + Delta-G solvation = -30083.517824 eV Core-core repulsion = 25976.357687 eV Total energy + Delta-G solvation = -4107.160138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.96624 -42.27493 -40.18501 -38.10034 -37.13790 -35.43208 -34.82925 -33.68815 -32.85437 -31.26148 -30.32841 -29.52983 -27.82499 -26.68784 -25.61400 -23.92424 -23.47432 -23.03220 -21.85620 -21.33207 -19.59771 -19.03946 -18.91705 -18.81281 -18.59769 -17.79524 -17.17771 -17.06085 -16.53035 -16.21613 -16.11013 -15.75817 -15.61787 -15.20289 -15.06953 -14.71322 -14.48487 -14.41336 -14.22428 -14.11658 -13.84006 -13.50842 -13.15290 -13.11369 -12.98700 -12.81303 -12.43406 -12.22630 -12.21146 -11.94714 -11.85793 -11.80340 -11.71441 -11.47836 -11.39384 -11.33419 -10.77700 -10.74125 -10.31260 -9.93845 -9.45547 -8.30917 -6.36860 0.53446 1.08172 1.35816 1.36991 1.40106 1.52558 1.92399 2.36686 2.41265 2.48472 3.02097 3.04693 3.14764 3.32156 3.42098 3.50373 3.67465 3.73223 3.94476 4.03194 4.16733 4.22480 4.29425 4.30909 4.37082 4.44217 4.47409 4.53897 4.59908 4.66838 4.69890 4.76842 4.78801 4.87312 4.95011 4.99441 5.07439 5.13161 5.23314 5.25391 5.41690 5.59627 5.73098 5.93394 5.99597 6.20621 6.25621 6.70942 6.88021 7.28222 7.28790 8.86102 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013631 B = 0.003182 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.617683 B = 8798.009399 C = 9736.431687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.004 3.996 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.240 1.240 7 C -0.539 4.539 8 H 0.025 0.975 9 C 0.001 3.999 10 C 0.074 3.926 11 N -0.511 5.511 12 C 0.027 3.973 13 C -0.092 4.092 14 C 0.091 3.909 15 C 0.013 3.987 16 C 0.100 3.900 17 N -0.594 5.594 18 C 0.189 3.811 19 C -0.232 4.232 20 C -0.009 4.009 21 N -0.403 5.403 22 O 0.086 5.914 23 C -0.022 4.022 24 C 0.489 3.511 25 O -0.574 6.574 26 C 0.045 3.955 27 O -0.363 6.363 28 H 0.267 0.733 29 H 0.028 0.972 30 H 0.024 0.976 31 H 0.013 0.987 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.032 0.968 35 H 0.102 0.898 36 H 0.125 0.875 37 H 0.034 0.966 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.139 0.861 42 H 0.089 0.911 43 H 0.182 0.818 44 H 0.264 0.736 45 H 0.145 0.855 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.724 -7.602 0.020 29.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.778 3.222 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.163 1.163 7 C -0.578 4.578 8 H 0.043 0.957 9 C -0.036 4.036 10 C -0.054 4.054 11 N -0.235 5.235 12 C -0.101 4.101 13 C -0.129 4.129 14 C 0.050 3.950 15 C -0.116 4.116 16 C -0.022 4.022 17 N -0.326 5.326 18 C 0.067 3.933 19 C -0.238 4.238 20 C -0.188 4.188 21 N -0.109 5.109 22 O 0.023 5.977 23 C -0.104 4.104 24 C 0.277 3.723 25 O -0.455 6.455 26 C -0.034 4.034 27 O -0.281 6.281 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.050 0.950 35 H 0.120 0.880 36 H 0.143 0.857 37 H 0.052 0.948 38 H 0.100 0.900 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.157 0.843 42 H 0.108 0.892 43 H 0.199 0.801 44 H 0.280 0.720 45 H 0.162 0.838 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 27.949 -8.494 -1.132 29.233 hybrid contribution -1.139 -0.142 1.263 1.707 sum 26.810 -8.636 0.131 28.167 Atomic orbital electron populations 1.70080 1.08535 1.28340 1.52343 1.26067 0.95642 1.03822 0.93741 0.85581 0.79696 0.77548 0.79391 1.18871 1.21074 1.16282 1.21416 0.92158 0.93050 1.51131 0.95707 1.19455 0.93358 0.93685 0.97118 1.21987 0.86606 0.98187 0.98658 1.64931 1.07639 1.07582 1.43388 1.23375 0.95424 0.99103 0.92188 1.22519 0.96236 0.88856 1.05323 1.22435 0.93372 0.95248 0.83917 1.23524 0.96276 0.91829 0.99929 1.22336 0.98978 0.77573 1.03274 1.47657 1.45980 1.07571 1.31364 1.19812 0.91515 0.99808 0.82158 1.21906 1.05875 0.95648 1.00341 1.25246 0.97519 1.02314 0.93680 1.73940 1.21227 1.01304 1.14388 1.84812 1.47505 1.24119 1.41226 1.26774 0.93904 1.00967 0.88771 1.21093 0.80833 0.87577 0.82754 1.90709 1.66024 1.15301 1.73444 1.22852 0.97726 0.82297 1.00570 1.88153 1.90609 1.20432 1.28928 0.92410 0.95408 0.95731 0.96863 0.92745 0.89180 0.94957 0.87963 0.85688 0.94783 0.89959 0.86655 0.86870 0.84287 0.89216 0.80062 0.72035 0.83785 0.89980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 2 C 0.00 0.24 5.47 84.65 0.46 0.70 16 3 Si 0.96 43.37 27.47 68.60 1.88 45.26 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.24 -9.90 6.54 99.48 0.65 -9.25 16 7 C -0.54 -31.42 9.66 25.60 0.25 -31.17 16 8 H 0.02 1.61 7.99 -2.92 -0.02 1.58 16 9 C 0.00 0.07 3.70 29.85 0.11 0.18 16 10 C 0.07 2.95 4.96 86.30 0.43 3.38 16 11 N -0.51 -15.27 5.40 -883.27 -4.77 -20.04 16 12 C 0.03 0.68 5.11 86.68 0.44 1.12 16 13 C -0.09 -1.40 6.32 31.68 0.20 -1.20 16 14 C 0.09 1.55 0.96 -10.43 -0.01 1.54 16 15 C 0.01 0.32 5.39 86.26 0.46 0.78 16 16 C 0.10 1.00 4.99 86.25 0.43 1.43 16 17 N -0.59 -8.53 2.79 -829.93 -2.32 -10.84 16 18 C 0.19 2.08 5.90 85.63 0.51 2.59 16 19 C -0.23 -3.48 5.90 -19.74 -0.12 -3.60 16 20 C -0.01 -0.20 12.16 85.71 1.04 0.84 16 21 N -0.40 -10.25 12.07 -59.25 -0.72 -10.96 16 22 O 0.09 1.77 11.20 71.62 0.80 2.57 16 23 C -0.02 -0.26 12.26 67.17 0.82 0.57 16 24 C 0.49 10.30 7.43 87.68 0.65 10.95 16 25 O -0.57 -15.67 16.34 -3.04 -0.05 -15.72 16 26 C 0.04 0.89 6.42 71.11 0.46 1.35 16 27 O -0.36 -7.32 10.34 -148.98 -1.54 -8.86 16 28 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 29 H 0.03 1.27 7.20 -2.39 -0.02 1.25 16 30 H 0.02 1.08 6.22 -2.39 -0.01 1.06 16 31 H 0.01 0.56 7.82 -2.39 -0.02 0.54 16 32 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.09 2.29 7.68 -2.39 -0.02 2.27 16 34 H 0.03 0.95 7.99 -2.39 -0.02 0.93 16 35 H 0.10 1.36 8.06 -2.39 -0.02 1.34 16 36 H 0.12 1.15 7.85 -2.39 -0.02 1.13 16 37 H 0.03 0.98 5.62 -2.39 -0.01 0.97 16 38 H 0.08 1.98 7.62 -2.39 -0.02 1.96 16 39 H 0.12 0.69 7.98 -2.39 -0.02 0.67 16 40 H 0.11 0.55 8.11 -2.39 -0.02 0.53 16 41 H 0.14 0.33 8.04 -2.39 -0.02 0.31 16 42 H 0.09 1.29 7.22 -2.39 -0.02 1.27 16 43 H 0.18 4.06 8.06 -2.91 -0.02 4.04 16 44 H 0.26 0.20 8.06 -2.91 -0.02 0.17 16 45 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.08 1.81 6.53 -2.38 -0.02 1.79 16 Total: -1.00 -80.25 369.59 0.67 -79.58 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 0.94 Total: 9.45 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 6.14 Total: -10.54 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -7.50 Total: -101.74 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.79 Total: -22.00 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.88 Total: 45.26 kcal Total: -80.25 0.67 -79.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040139.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.289 kcal (2) G-P(sol) polarization free energy of solvation -80.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds