Wall clock time and date at job start Tue Mar 31 2020 18:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00006 * 2 1 4 4 H 1.48497 * 109.47486 * 270.00054 * 3 2 1 5 5 H 1.48500 * 109.47438 * 30.00172 * 3 2 1 6 6 H 1.48505 * 109.47413 * 150.00085 * 3 2 1 7 7 C 1.37876 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00016 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00080 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47177 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.46999 * 180.02562 * 10 9 7 12 12 C 1.46965 * 111.00285 * 314.75204 * 11 10 9 13 13 C 1.53766 * 108.95822 * 180.38504 * 12 11 10 14 14 H 1.08997 * 112.82246 * 187.64693 * 13 12 11 15 15 C 1.54693 * 107.65389 * 312.23303 * 13 12 11 16 16 C 1.54349 * 104.63327 * 87.37995 * 15 13 12 17 17 C 1.54695 * 104.63277 * 0.02562 * 16 15 13 18 18 H 1.09000 * 112.39074 * 147.76829 * 17 16 15 19 19 C 1.46970 * 111.00082 * 189.99644 * 11 10 9 20 20 N 1.48446 * 106.97412 * 63.52862 * 13 12 11 21 21 C 1.34769 * 128.45250 * 108.78436 * 20 13 12 22 22 O 1.21586 * 120.00115 * 0.02562 * 21 20 13 23 23 N 1.34778 * 120.00202 * 179.97438 * 21 20 13 24 24 C 1.46496 * 120.00354 * 179.97438 * 23 21 20 25 25 C 1.52996 * 109.47255 * 180.02562 * 24 23 21 26 26 F 1.39898 * 109.47457 * 60.00438 * 25 24 23 27 27 F 1.39909 * 109.47024 * 180.02562 * 25 24 23 28 28 F 1.39900 * 109.47392 * 299.99856 * 25 24 23 29 29 H 0.97001 * 119.99584 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46990 * 60.00251 * 9 7 2 31 31 H 1.08995 * 109.47717 * 299.99995 * 9 7 2 32 32 H 1.08998 * 109.46957 * 60.00229 * 10 9 7 33 33 H 1.08995 * 109.46897 * 300.00014 * 10 9 7 34 34 H 1.09002 * 109.55458 * 60.54458 * 12 11 10 35 35 H 1.08997 * 109.55673 * 300.22614 * 12 11 10 36 36 H 1.09001 * 110.40876 * 206.17290 * 15 13 12 37 37 H 1.08997 * 110.40459 * 328.47213 * 15 13 12 38 38 H 1.09002 * 110.40259 * 118.79476 * 16 15 13 39 39 H 1.08999 * 110.40559 * 241.09781 * 16 15 13 40 40 H 1.09007 * 109.55287 * 59.77243 * 19 11 10 41 41 H 1.08995 * 109.55920 * 299.46640 * 19 11 10 42 42 H 0.97002 * 119.99628 * 0.02562 * 23 21 20 43 43 H 1.08998 * 109.47607 * 300.00599 * 24 23 21 44 44 H 1.09006 * 109.46940 * 60.00322 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6366 -0.0023 11 7 5.4906 -2.6365 -0.0022 12 6 6.0173 -1.6698 -0.9758 13 6 7.5539 -1.7153 -0.9437 14 1 8.0128 -0.9305 -1.5450 15 6 7.9942 -1.6558 0.5381 16 6 7.9941 -3.1272 1.0043 17 6 7.5544 -3.9319 -0.2417 18 1 8.0134 -4.9197 -0.2812 19 6 6.0173 -3.9875 -0.2415 20 7 7.9565 -3.0744 -1.3845 21 6 8.5399 -3.4413 -2.5426 22 8 8.8008 -2.6034 -3.3841 23 7 8.8351 -4.7370 -2.7677 24 6 9.4688 -5.1359 -4.0268 25 6 9.6934 -6.6493 -4.0277 26 9 8.4636 -7.3034 -3.8969 27 9 10.2990 -7.0302 -5.2300 28 9 10.5234 -6.9983 -2.9569 29 1 -0.4849 0.8401 -0.0004 30 1 3.8752 -0.6804 0.8889 31 1 3.8746 -0.6800 -0.8911 32 1 3.6580 -3.1498 -0.8925 33 1 3.6586 -3.1509 0.8875 34 1 5.6765 -0.6676 -0.7157 35 1 5.6654 -1.9289 -1.9743 36 1 8.9947 -1.2311 0.6206 37 1 7.2844 -1.0702 1.1222 38 1 8.9945 -3.4270 1.3163 39 1 7.2846 -3.2675 1.8197 40 1 5.6653 -4.3506 -1.2072 41 1 5.6764 -4.6572 0.5480 42 1 8.6273 -5.4054 -2.0962 43 1 8.8220 -4.8645 -4.8611 44 1 10.4268 -4.6261 -4.1290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277944802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:21 Heat of formation + Delta-G solvation = -159.393378 kcal Electronic energy + Delta-G solvation = -30207.518323 eV Core-core repulsion = 25552.296033 eV Total energy + Delta-G solvation = -4655.222290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.64122 -48.15348 -48.11482 -41.11063 -39.09589 -35.73019 -35.33664 -32.85207 -31.89980 -31.45031 -30.06028 -29.25063 -26.30261 -24.62244 -24.06294 -23.35173 -21.87614 -20.83961 -20.20282 -19.75512 -19.10890 -18.85144 -18.32848 -17.50931 -16.85611 -16.25554 -16.05960 -15.64035 -15.15513 -14.98496 -14.81613 -14.57516 -14.54195 -14.32254 -14.26263 -14.22297 -13.98223 -13.87097 -13.74431 -13.43523 -13.26196 -12.78272 -12.64500 -12.45790 -12.39041 -11.82191 -11.60547 -11.24494 -11.16492 -11.03505 -10.82667 -10.46013 -10.40275 -10.04054 -9.91266 -9.85245 -9.74436 -9.23543 -8.73229 -8.56885 -7.94436 -6.08202 -4.06975 1.86872 2.27418 2.89711 3.17345 3.28916 3.35007 3.36793 3.39362 3.50467 3.78944 4.12302 4.42002 4.55475 4.59847 4.67210 4.77322 4.80871 4.97695 5.10157 5.25631 5.26138 5.40400 5.52975 5.59158 5.75174 5.77291 5.80863 5.92909 5.93982 6.07369 6.13974 6.20193 6.22981 6.38147 6.64830 6.67376 7.04531 7.22121 7.42303 7.50566 7.66551 7.78708 8.25390 8.48270 8.95599 9.53749 11.05166 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018881 B = 0.002703 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.611669 B =10356.842724 C =10674.541488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.013 4.013 10 C 0.072 3.928 11 N -0.534 5.534 12 C 0.043 3.957 13 C 0.151 3.849 14 H 0.105 0.895 15 C -0.115 4.115 16 C -0.111 4.111 17 C 0.126 3.874 18 H 0.093 0.907 19 C 0.045 3.955 20 N -0.633 5.633 21 C 0.736 3.264 22 O -0.585 6.585 23 N -0.747 5.747 24 C 0.100 3.900 25 C 0.448 3.552 26 F -0.177 7.177 27 F -0.173 7.173 28 F -0.179 7.179 29 H 0.263 0.737 30 H 0.026 0.974 31 H 0.013 0.987 32 H 0.026 0.974 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.037 0.963 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.033 0.967 41 H 0.086 0.914 42 H 0.402 0.598 43 H 0.114 0.886 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.018 -12.694 -3.110 26.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.561 4.561 8 H 0.089 0.911 9 C -0.050 4.050 10 C -0.055 4.055 11 N -0.259 5.259 12 C -0.086 4.086 13 C 0.048 3.952 14 H 0.123 0.877 15 C -0.154 4.154 16 C -0.149 4.149 17 C 0.022 3.978 18 H 0.111 0.889 19 C -0.085 4.085 20 N -0.370 5.370 21 C 0.439 3.561 22 O -0.462 6.462 23 N -0.407 5.407 24 C -0.027 4.027 25 C 0.394 3.606 26 F -0.158 7.158 27 F -0.154 7.154 28 F -0.160 7.160 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.031 0.969 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.052 0.948 41 H 0.104 0.896 42 H 0.237 0.763 43 H 0.132 0.868 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 23.262 -11.870 -3.392 26.334 hybrid contribution -0.141 -0.138 -0.625 0.656 sum 23.120 -12.008 -4.018 26.360 Atomic orbital electron populations 1.69913 1.06345 1.26966 1.50932 1.25004 0.94720 0.99192 0.94440 0.86780 0.80489 0.83540 0.78525 1.20331 1.21377 1.18739 1.21048 0.89326 0.94517 1.51183 0.91132 1.19690 0.96927 0.91697 0.96700 1.22136 0.82977 1.00431 0.99945 1.62140 1.09956 1.04888 1.48901 1.22695 0.92712 0.98679 0.94494 1.22475 0.94326 0.83259 0.95154 0.87715 1.22427 1.01224 0.97129 0.94611 1.22369 1.00934 0.94808 0.96826 1.22524 0.94715 0.94371 0.86177 0.88942 1.22600 0.93173 0.92293 1.00386 1.48479 1.62332 1.10736 1.15476 1.15062 0.78000 0.81698 0.81374 1.90957 1.60119 1.50180 1.44989 1.44670 1.67925 1.08430 1.19634 1.22244 1.03135 0.87341 0.89943 1.20571 0.74361 0.91683 0.74017 1.93244 1.43288 1.83801 1.95506 1.93233 1.83629 1.92632 1.45928 1.93228 1.72607 1.93724 1.56469 0.92679 0.95605 0.96934 0.95596 0.91055 0.88433 0.94491 0.92034 0.88978 0.92114 0.89175 0.94837 0.89600 0.76261 0.86816 0.86840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 9 C -0.01 -0.29 3.26 -27.88 -0.09 -0.38 16 10 C 0.07 1.35 5.23 -3.82 -0.02 1.33 16 11 N -0.53 -8.07 3.79 -233.49 -0.88 -8.95 16 12 C 0.04 0.66 4.18 -3.39 -0.01 0.65 16 13 C 0.15 1.95 4.20 -65.57 -0.28 1.67 16 14 H 0.10 1.39 7.95 -51.93 -0.41 0.98 16 15 C -0.12 -1.25 6.14 -25.13 -0.15 -1.41 16 16 C -0.11 -1.05 6.14 -25.13 -0.15 -1.21 16 17 C 0.13 1.25 4.10 -65.55 -0.27 0.98 16 18 H 0.09 0.67 6.88 -51.93 -0.36 0.31 16 19 C 0.04 0.54 5.04 -3.36 -0.02 0.53 16 20 N -0.63 -7.67 2.77 -158.40 -0.44 -8.11 16 21 C 0.74 9.52 8.59 -86.92 -0.75 8.77 16 22 O -0.58 -9.64 16.69 5.29 0.09 -9.55 16 23 N -0.75 -6.93 5.40 -65.23 -0.35 -7.28 16 24 C 0.10 0.75 5.64 -4.05 -0.02 0.73 16 25 C 0.45 3.21 3.11 37.16 0.12 3.32 16 26 F -0.18 -1.46 17.18 2.25 0.04 -1.42 16 27 F -0.17 -1.31 17.32 2.25 0.04 -1.27 16 28 F -0.18 -1.36 17.18 2.25 0.04 -1.32 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.03 0.59 7.20 -51.93 -0.37 0.22 16 31 H 0.01 0.29 5.77 -51.93 -0.30 -0.01 16 32 H 0.03 0.51 8.06 -51.93 -0.42 0.09 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.10 1.60 6.25 -51.93 -0.32 1.28 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.09 7.81 -51.93 -0.41 0.68 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.89 7.81 -51.93 -0.41 0.48 16 40 H 0.03 0.45 8.12 -51.92 -0.42 0.03 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.40 3.04 6.80 -40.82 -0.28 2.77 16 43 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 359.22 15.07 5.41 5.41 Total: -1.00 -32.51 359.22 -8.28 -40.79 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.24 Total: -0.09 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -2.08 Total: 1.96 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.90 Total: -51.18 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.12 Total: -4.02 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.51 -8.28 -40.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277944802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.605 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds