Wall clock time and date at job start Tue Mar 31 2020 18:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00006 * 2 1 4 4 H 1.48497 * 109.47486 * 270.00054 * 3 2 1 5 5 H 1.48500 * 109.47438 * 30.00172 * 3 2 1 6 6 H 1.48505 * 109.47413 * 150.00085 * 3 2 1 7 7 C 1.37876 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00016 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00080 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47177 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.46999 * 180.02562 * 10 9 7 12 12 C 1.46965 * 111.00285 * 314.75204 * 11 10 9 13 13 C 1.53766 * 108.95822 * 180.38504 * 12 11 10 14 14 H 1.08997 * 112.82246 * 187.64693 * 13 12 11 15 15 C 1.54693 * 107.65389 * 312.23303 * 13 12 11 16 16 C 1.54349 * 104.63327 * 87.37995 * 15 13 12 17 17 C 1.54695 * 104.63277 * 0.02562 * 16 15 13 18 18 H 1.09000 * 112.39074 * 147.76829 * 17 16 15 19 19 C 1.46970 * 111.00082 * 189.99644 * 11 10 9 20 20 N 1.48446 * 106.97412 * 63.52862 * 13 12 11 21 21 C 1.34769 * 128.45250 * 108.78436 * 20 13 12 22 22 O 1.21586 * 120.00115 * 0.02562 * 21 20 13 23 23 N 1.34778 * 120.00202 * 179.97438 * 21 20 13 24 24 C 1.46496 * 120.00354 * 179.97438 * 23 21 20 25 25 C 1.52996 * 109.47255 * 180.02562 * 24 23 21 26 26 F 1.39898 * 109.47457 * 60.00438 * 25 24 23 27 27 F 1.39909 * 109.47024 * 180.02562 * 25 24 23 28 28 F 1.39900 * 109.47392 * 299.99856 * 25 24 23 29 29 H 0.97001 * 119.99584 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46990 * 60.00251 * 9 7 2 31 31 H 1.08995 * 109.47717 * 299.99995 * 9 7 2 32 32 H 1.08998 * 109.46957 * 60.00229 * 10 9 7 33 33 H 1.08995 * 109.46897 * 300.00014 * 10 9 7 34 34 H 1.09002 * 109.55458 * 60.54458 * 12 11 10 35 35 H 1.08997 * 109.55673 * 300.22614 * 12 11 10 36 36 H 1.09001 * 110.40876 * 206.17290 * 15 13 12 37 37 H 1.08997 * 110.40459 * 328.47213 * 15 13 12 38 38 H 1.09002 * 110.40259 * 118.79476 * 16 15 13 39 39 H 1.08999 * 110.40559 * 241.09781 * 16 15 13 40 40 H 1.09007 * 109.55287 * 59.77243 * 19 11 10 41 41 H 1.08995 * 109.55920 * 299.46640 * 19 11 10 42 42 H 0.97002 * 119.99628 * 0.02562 * 23 21 20 43 43 H 1.08998 * 109.47607 * 300.00599 * 24 23 21 44 44 H 1.09006 * 109.46940 * 60.00322 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6366 -0.0023 11 7 5.4906 -2.6365 -0.0022 12 6 6.0173 -1.6698 -0.9758 13 6 7.5539 -1.7153 -0.9437 14 1 8.0128 -0.9305 -1.5450 15 6 7.9942 -1.6558 0.5381 16 6 7.9941 -3.1272 1.0043 17 6 7.5544 -3.9319 -0.2417 18 1 8.0134 -4.9197 -0.2812 19 6 6.0173 -3.9875 -0.2415 20 7 7.9565 -3.0744 -1.3845 21 6 8.5399 -3.4413 -2.5426 22 8 8.8008 -2.6034 -3.3841 23 7 8.8351 -4.7370 -2.7677 24 6 9.4688 -5.1359 -4.0268 25 6 9.6934 -6.6493 -4.0277 26 9 8.4636 -7.3034 -3.8969 27 9 10.2990 -7.0302 -5.2300 28 9 10.5234 -6.9983 -2.9569 29 1 -0.4849 0.8401 -0.0004 30 1 3.8752 -0.6804 0.8889 31 1 3.8746 -0.6800 -0.8911 32 1 3.6580 -3.1498 -0.8925 33 1 3.6586 -3.1509 0.8875 34 1 5.6765 -0.6676 -0.7157 35 1 5.6654 -1.9289 -1.9743 36 1 8.9947 -1.2311 0.6206 37 1 7.2844 -1.0702 1.1222 38 1 8.9945 -3.4270 1.3163 39 1 7.2846 -3.2675 1.8197 40 1 5.6653 -4.3506 -1.2072 41 1 5.6764 -4.6572 0.5480 42 1 8.6273 -5.4054 -2.0962 43 1 8.8220 -4.8645 -4.8611 44 1 10.4268 -4.6261 -4.1290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277944802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:21 Heat of formation + Delta-G solvation = -181.360112 kcal Electronic energy + Delta-G solvation = -30208.470872 eV Core-core repulsion = 25552.296033 eV Total energy + Delta-G solvation = -4656.174839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.24237 -48.75365 -48.71962 -42.09640 -40.11066 -37.07150 -36.22336 -34.85648 -32.81321 -32.56276 -31.68620 -30.00860 -27.73756 -25.74352 -25.19690 -24.34759 -22.99962 -21.93036 -21.37207 -20.80464 -19.70660 -19.50649 -19.32409 -18.99765 -18.14258 -17.21684 -17.08484 -16.55802 -16.43264 -16.06596 -15.64719 -15.60989 -15.35680 -15.23728 -15.14467 -15.06202 -14.87081 -14.85808 -14.79096 -14.74493 -14.50927 -14.10822 -13.80343 -13.65007 -13.29606 -13.06594 -13.02149 -12.72728 -12.34110 -12.14395 -11.94865 -11.82005 -11.73317 -11.67653 -11.47755 -11.27257 -11.21636 -10.76563 -10.61109 -9.71067 -9.25391 -8.30480 -6.34837 1.08789 1.36586 1.37930 1.50081 1.61020 1.92122 2.35771 2.54718 2.59874 2.90852 2.92562 3.05525 3.17398 3.64605 3.69550 3.90089 3.94489 4.09821 4.13339 4.22324 4.34384 4.40869 4.42402 4.50284 4.62737 4.76491 4.79857 4.84863 4.86837 4.93632 4.98261 5.08046 5.20152 5.28522 5.31697 5.46320 5.57154 5.61287 5.81627 6.03946 6.17885 6.28972 6.73429 6.76820 7.29957 7.30058 8.86278 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018881 B = 0.002703 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.611669 B =10356.842724 C =10674.541488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.006 3.994 3 Si 0.948 3.052 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.239 1.239 7 C -0.532 4.532 8 H 0.031 0.969 9 C -0.004 4.004 10 C 0.084 3.916 11 N -0.524 5.524 12 C 0.045 3.955 13 C 0.152 3.848 14 H 0.097 0.903 15 C -0.111 4.111 16 C -0.106 4.106 17 C 0.132 3.868 18 H 0.129 0.871 19 C 0.041 3.959 20 N -0.635 5.635 21 C 0.733 3.267 22 O -0.625 6.625 23 N -0.735 5.735 24 C 0.099 3.901 25 C 0.460 3.540 26 F -0.183 7.183 27 F -0.174 7.174 28 F -0.178 7.178 29 H 0.266 0.734 30 H 0.030 0.970 31 H 0.015 0.985 32 H 0.009 0.991 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.010 0.990 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.020 0.980 41 H 0.105 0.895 42 H 0.412 0.588 43 H 0.114 0.886 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.977 -13.191 -2.207 29.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.191 4.191 3 Si 0.772 3.228 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.162 1.162 7 C -0.571 4.571 8 H 0.050 0.950 9 C -0.042 4.042 10 C -0.044 4.044 11 N -0.248 5.248 12 C -0.084 4.084 13 C 0.048 3.952 14 H 0.115 0.885 15 C -0.149 4.149 16 C -0.144 4.144 17 C 0.029 3.971 18 H 0.147 0.853 19 C -0.088 4.088 20 N -0.372 5.372 21 C 0.435 3.565 22 O -0.506 6.506 23 N -0.394 5.394 24 C -0.027 4.027 25 C 0.405 3.595 26 F -0.164 7.164 27 F -0.155 7.155 28 F -0.160 7.160 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.033 0.967 32 H 0.027 0.973 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.029 0.971 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.039 0.961 41 H 0.124 0.876 42 H 0.249 0.751 43 H 0.132 0.868 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 26.246 -12.429 -2.468 29.145 hybrid contribution -1.122 -0.091 -0.949 1.472 sum 25.124 -12.520 -3.418 28.279 Atomic orbital electron populations 1.70069 1.08362 1.28183 1.52630 1.25989 0.95575 1.03520 0.94047 0.85680 0.79919 0.78206 0.79027 1.19696 1.21003 1.16195 1.21419 0.92063 0.93108 1.50490 0.95050 1.19553 0.93496 0.94395 0.96732 1.21829 0.85633 0.97656 0.99243 1.62114 1.07221 1.06787 1.48711 1.22642 0.94826 0.97982 0.92941 1.22369 0.92151 0.83878 0.96817 0.88452 1.22396 1.01684 0.98331 0.92504 1.22384 1.02381 0.93404 0.96236 1.22702 0.92821 0.95986 0.85599 0.85303 1.22773 0.95062 0.90527 1.00423 1.48508 1.61983 1.10802 1.15862 1.15216 0.77899 0.82309 0.81048 1.90928 1.61795 1.51585 1.46292 1.44519 1.67157 1.07367 1.20374 1.22337 1.03553 0.87625 0.89173 1.20376 0.74055 0.91188 0.73888 1.93238 1.43716 1.83920 1.95530 1.93234 1.83627 1.92594 1.46067 1.93231 1.72582 1.93710 1.56455 0.92496 0.95135 0.96725 0.97268 0.90939 0.89728 0.97150 0.90514 0.89910 0.89681 0.89109 0.96137 0.87638 0.75054 0.86773 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.86 13.96 21.45 0.30 -59.56 16 2 C 0.01 0.32 5.47 84.65 0.46 0.79 16 3 Si 0.95 44.01 27.47 68.60 1.88 45.89 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 7 C -0.53 -30.48 9.66 25.60 0.25 -30.23 16 8 H 0.03 1.98 7.99 -2.91 -0.02 1.95 16 9 C 0.00 -0.19 3.26 29.85 0.10 -0.09 16 10 C 0.08 3.17 5.23 86.31 0.45 3.62 16 11 N -0.52 -15.24 3.79 -892.64 -3.38 -18.62 16 12 C 0.05 1.37 4.18 86.55 0.36 1.74 16 13 C 0.15 3.71 4.20 45.45 0.19 3.90 16 14 H 0.10 2.54 7.95 -2.39 -0.02 2.52 16 15 C -0.11 -2.10 6.14 31.63 0.19 -1.91 16 16 C -0.11 -1.59 6.14 31.63 0.19 -1.40 16 17 C 0.13 2.17 4.10 45.47 0.19 2.35 16 18 H 0.13 1.25 6.88 -2.39 -0.02 1.23 16 19 C 0.04 0.91 5.04 86.56 0.44 1.34 16 20 N -0.64 -14.10 2.77 -773.33 -2.15 -16.25 16 21 C 0.73 17.77 8.59 179.06 1.54 19.31 16 22 O -0.63 -20.19 16.69 -3.99 -0.07 -20.26 16 23 N -0.74 -12.00 5.40 -478.55 -2.58 -14.58 16 24 C 0.10 1.31 5.64 86.38 0.49 1.80 16 25 C 0.46 5.66 3.11 71.98 0.22 5.88 16 26 F -0.18 -2.67 17.18 44.97 0.77 -1.90 16 27 F -0.17 -2.34 17.32 44.97 0.78 -1.56 16 28 F -0.18 -2.27 17.18 44.97 0.77 -1.50 16 29 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 30 H 0.03 1.37 7.20 -2.39 -0.02 1.35 16 31 H 0.01 0.66 5.77 -2.39 -0.01 0.65 16 32 H 0.01 0.37 8.06 -2.39 -0.02 0.35 16 33 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.08 2.75 6.25 -2.39 -0.01 2.74 16 35 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.76 7.81 -2.39 -0.02 1.74 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 39 H 0.09 1.43 7.81 -2.39 -0.02 1.41 16 40 H 0.02 0.52 8.12 -2.38 -0.02 0.50 16 41 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.41 4.96 6.80 -92.71 -0.63 4.33 16 43 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -72.52 359.22 1.75 -70.77 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.35 Total: 10.46 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 5.07 Total: 7.11 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -7.81 Total: -109.00 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.07 Total: -20.26 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 2.32 Total: -4.97 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.89 kcal Total: -72.52 1.75 -70.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277944802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.592 kcal (2) G-P(sol) polarization free energy of solvation -72.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds