Wall clock time and date at job start Tue Mar 31 2020 18:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00358 * 2 1 4 4 H 1.48495 * 109.47070 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46769 * 299.99699 * 3 2 1 6 6 H 1.48504 * 109.46912 * 59.99404 * 3 2 1 7 7 C 1.38817 * 119.99622 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99824 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00391 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00488 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47008 * 325.00353 * 10 9 7 12 12 C 1.53004 * 109.47171 * 84.99750 * 10 9 7 13 13 O 1.42898 * 109.46466 * 65.00228 * 12 10 9 14 14 C 1.52996 * 109.47509 * 205.00279 * 10 9 7 15 15 N 1.46498 * 109.47059 * 54.99655 * 14 10 9 16 16 C 1.34777 * 119.99828 * 179.72339 * 15 14 10 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 14 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 14 19 19 N 1.46492 * 109.47441 * 180.02562 * 18 16 15 20 20 C 1.34776 * 120.00063 * 180.02562 * 19 18 16 21 21 O 1.21277 * 120.00215 * 0.02562 * 20 19 18 22 22 C 1.50701 * 119.99977 * 179.97438 * 20 19 18 23 23 C 1.50708 * 109.47023 * 180.02562 * 22 20 19 24 24 C 1.38230 * 119.99636 * 269.72823 * 23 22 20 25 25 C 1.38240 * 119.99664 * 179.76596 * 24 23 22 26 26 C 1.38240 * 119.99727 * 0.51176 * 25 24 23 27 27 C 1.38232 * 120.00214 * 359.73877 * 26 25 24 28 28 C 1.38236 * 119.99579 * 90.00364 * 23 22 20 29 29 H 0.97003 * 119.99413 * 0.02562 * 1 2 3 30 30 H 0.97009 * 119.99600 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.47343 * 185.00159 * 12 10 9 32 32 H 1.09004 * 109.46984 * 305.00700 * 12 10 9 33 33 H 0.96700 * 113.99771 * 180.02562 * 13 12 10 34 34 H 1.09004 * 109.47066 * 294.99922 * 14 10 9 35 35 H 1.08994 * 109.46974 * 175.00070 * 14 10 9 36 36 H 0.97001 * 120.00384 * 0.02562 * 15 14 10 37 37 H 1.08998 * 109.46954 * 300.00581 * 18 16 15 38 38 H 1.09002 * 109.46946 * 59.99717 * 18 16 15 39 39 H 0.97003 * 120.00350 * 359.97438 * 19 18 16 40 40 H 1.08998 * 109.47477 * 300.00192 * 22 20 19 41 41 H 1.08997 * 109.47150 * 60.00298 * 22 20 19 42 42 H 1.07994 * 120.00371 * 359.97438 * 24 23 22 43 43 H 1.07995 * 120.00112 * 180.22989 * 25 24 23 44 44 H 1.08001 * 119.99765 * 179.72930 * 26 25 24 45 45 H 1.08001 * 120.00368 * 179.97438 * 27 26 25 46 46 H 1.07997 * 120.00275 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 2.9686 -3.5506 -0.5889 12 6 2.4218 -4.0357 1.4376 13 8 1.2275 -4.2886 2.1803 14 6 1.1808 -4.7522 -0.6091 15 7 0.7342 -4.3354 -1.9407 16 6 -0.0507 -5.1498 -2.6737 17 8 -0.3914 -6.2255 -2.2289 18 6 -0.5050 -4.7239 -4.0460 19 7 -1.3410 -5.7747 -4.6317 20 6 -1.8628 -5.6123 -5.8637 21 8 -1.6399 -4.5966 -6.4877 22 6 -2.7224 -6.6935 -6.4664 23 6 -3.1757 -6.2680 -7.8392 24 6 -4.3597 -5.5708 -7.9908 25 6 -4.7731 -5.1763 -9.2495 26 6 -4.0078 -5.4882 -10.3577 27 6 -2.8265 -6.1900 -10.2066 28 6 -2.4104 -6.5800 -8.9473 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 3.0423 -4.9318 1.4311 32 1 2.9715 -3.2165 1.9012 33 1 1.3826 -4.5345 3.1026 34 1 0.3131 -4.9201 0.0290 35 1 1.7556 -5.6746 -0.6908 36 1 1.0069 -3.4753 -2.2966 37 1 -1.0818 -3.8024 -3.9680 38 1 0.3650 -4.5553 -4.6807 39 1 -1.5184 -6.5876 -4.1331 40 1 -2.1457 -7.6152 -6.5440 41 1 -3.5926 -6.8618 -5.8319 42 1 -4.9600 -5.3314 -7.1256 43 1 -5.6962 -4.6284 -9.3676 44 1 -4.3331 -5.1838 -11.3416 45 1 -2.2288 -6.4340 -11.0724 46 1 -1.4875 -7.1282 -8.8292 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278194287.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:28 Heat of formation + Delta-G solvation = -115.100468 kcal Electronic energy + Delta-G solvation = -27594.423912 eV Core-core repulsion = 23482.979048 eV Total energy + Delta-G solvation = -4111.444865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.35110 -40.57619 -39.52841 -38.60966 -36.43120 -35.53925 -35.19275 -33.84231 -33.18485 -31.74114 -30.57982 -29.59086 -27.85627 -26.07359 -25.50249 -23.45281 -22.74692 -21.68078 -21.47627 -21.28450 -19.47983 -18.77584 -18.16274 -17.84656 -17.48754 -17.18495 -17.10611 -16.78507 -16.36590 -16.20658 -15.79834 -15.64344 -15.41173 -15.23673 -14.89806 -14.65097 -14.50750 -14.24473 -14.10538 -13.92078 -13.89587 -13.50988 -13.34918 -13.04217 -12.87437 -12.74579 -12.66294 -12.21429 -11.99193 -11.86633 -11.84467 -11.73820 -11.16287 -11.10398 -10.93564 -10.71086 -10.28264 -10.03221 -9.77368 -9.61682 -9.00294 -7.90756 -5.19337 0.43254 0.54740 1.47474 1.49365 1.50514 1.59193 1.60870 1.82512 2.47604 2.57796 2.96048 3.42053 3.60908 3.65037 3.69539 3.91029 3.97046 4.01596 4.05341 4.18710 4.27192 4.30504 4.39105 4.41491 4.46060 4.58050 4.60360 4.62756 4.67613 4.80366 4.86735 5.01357 5.13724 5.18918 5.22796 5.25247 5.43637 5.55989 5.58628 5.65174 5.68914 6.15261 6.28625 6.45703 6.49432 7.06536 7.10290 7.18328 7.37097 8.09834 8.34113 9.32122 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013246 B = 0.002121 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.357418 B =13195.783574 C =14738.139757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.298 1.298 6 H -0.302 1.302 7 C -0.233 4.233 8 H 0.082 0.918 9 N -0.722 5.722 10 C 0.159 3.841 11 H 0.081 0.919 12 C 0.064 3.936 13 O -0.584 6.584 14 C 0.130 3.870 15 N -0.706 5.706 16 C 0.512 3.488 17 O -0.574 6.574 18 C 0.105 3.895 19 N -0.711 5.711 20 C 0.515 3.485 21 O -0.576 6.576 22 C -0.094 4.094 23 C -0.082 4.082 24 C -0.124 4.124 25 C -0.132 4.132 26 C -0.131 4.131 27 C -0.131 4.131 28 C -0.121 4.121 29 H 0.248 0.752 30 H 0.373 0.627 31 H 0.067 0.933 32 H 0.035 0.965 33 H 0.385 0.615 34 H 0.053 0.947 35 H 0.083 0.917 36 H 0.412 0.588 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.418 0.582 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.826 -17.502 -14.126 22.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.225 1.225 6 H -0.230 1.230 7 C -0.365 4.365 8 H 0.100 0.900 9 N -0.362 5.362 10 C 0.050 3.950 11 H 0.099 0.901 12 C -0.017 4.017 13 O -0.391 6.391 14 C 0.006 3.994 15 N -0.356 5.356 16 C 0.298 3.702 17 O -0.455 6.455 18 C -0.023 4.023 19 N -0.367 5.367 20 C 0.303 3.697 21 O -0.455 6.455 22 C -0.133 4.133 23 C -0.083 4.083 24 C -0.142 4.142 25 C -0.150 4.150 26 C -0.149 4.149 27 C -0.148 4.148 28 C -0.139 4.139 29 H 0.056 0.944 30 H 0.204 0.796 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.233 0.767 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.249 0.751 37 H 0.112 0.888 38 H 0.126 0.874 39 H 0.257 0.743 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.155 0.845 44 H 0.158 0.842 45 H 0.158 0.842 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.988 -17.272 -14.798 22.940 hybrid contribution 0.282 1.361 1.058 1.747 sum -2.706 -15.911 -13.740 21.196 Atomic orbital electron populations 1.69840 1.06606 1.25643 1.59576 1.25471 0.96137 1.00803 1.04093 0.85179 0.78485 0.80507 0.76170 1.18746 1.22543 1.22969 1.19639 0.91497 0.84813 1.40516 0.90006 1.42487 1.05387 1.00217 1.88133 1.20884 0.95234 0.85319 0.93582 0.90146 1.22879 0.86535 0.98604 0.93643 1.86516 1.32898 1.92082 1.27597 1.21417 0.98589 0.97200 0.82182 1.45900 1.50367 1.21669 1.17703 1.20618 0.78084 0.84221 0.87289 1.90640 1.57936 1.23745 1.73147 1.20973 0.97416 0.92557 0.91348 1.45704 1.51399 1.21914 1.17677 1.21130 0.79764 0.88487 0.80300 1.90736 1.61284 1.31498 1.61941 1.20715 1.01081 0.97618 0.93932 1.19521 0.95290 0.99104 0.94342 1.21268 0.96729 0.98009 0.98238 1.21419 1.00816 1.00104 0.92674 1.21476 0.95222 0.98576 0.99606 1.21433 0.97079 0.98578 0.97748 1.21273 0.99510 1.00473 0.92644 0.94356 0.79558 0.91515 0.94662 0.76671 0.92825 0.89893 0.75115 0.88832 0.87355 0.74300 0.85067 0.85546 0.85562 0.84549 0.84202 0.84233 0.85066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.51 13.06 21.65 0.28 -57.23 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.97 44.54 29.55 68.60 2.03 46.56 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 6 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 7 C -0.23 -11.81 9.93 84.04 0.83 -10.98 16 8 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.72 -33.02 4.51 -322.95 -1.46 -34.48 16 10 C 0.16 5.50 2.84 44.99 0.13 5.63 16 11 H 0.08 2.58 8.08 -2.39 -0.02 2.56 16 12 C 0.06 1.98 6.86 71.98 0.49 2.48 16 13 O -0.58 -19.27 12.64 -148.98 -1.88 -21.15 16 14 C 0.13 4.18 5.12 86.38 0.44 4.63 16 15 N -0.71 -21.79 5.39 -463.07 -2.49 -24.28 16 16 C 0.51 15.18 7.90 87.66 0.69 15.87 16 17 O -0.57 -19.29 15.67 -3.04 -0.05 -19.33 16 18 C 0.10 2.69 6.15 85.64 0.53 3.22 16 19 N -0.71 -16.18 5.53 -466.80 -2.58 -18.76 16 20 C 0.52 12.25 7.82 87.66 0.69 12.94 16 21 O -0.58 -18.81 16.03 -3.02 -0.05 -18.86 16 22 C -0.09 -1.49 5.83 29.10 0.17 -1.32 16 23 C -0.08 -1.62 4.37 -19.86 -0.09 -1.71 16 24 C -0.12 -2.49 9.70 22.27 0.22 -2.27 16 25 C -0.13 -2.42 10.05 22.27 0.22 -2.19 16 26 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 27 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 28 C -0.12 -2.28 9.70 22.27 0.22 -2.06 16 29 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 30 H 0.37 19.42 7.80 -92.70 -0.72 18.70 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.39 8.78 9.12 -74.06 -0.68 8.11 16 34 H 0.05 2.01 7.39 -2.38 -0.02 1.99 16 35 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.41 13.02 8.14 -92.71 -0.75 12.27 16 37 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.42 8.46 7.44 -92.71 -0.69 7.77 16 40 H 0.13 1.35 8.08 -2.39 -0.02 1.33 16 41 H 0.13 1.45 8.08 -2.39 -0.02 1.43 16 42 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 43 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 44 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 45 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 46 H 0.13 2.02 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -74.20 396.84 -2.55 -76.74 By element: Atomic # 1 Polarization: 55.89 SS G_CDS: -1.81 Total: 54.09 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: 5.46 Total: 16.69 kcal Atomic # 7 Polarization: -128.50 SS G_CDS: -6.25 Total: -134.75 kcal Atomic # 8 Polarization: -57.36 SS G_CDS: -1.98 Total: -59.34 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -74.20 -2.55 -76.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278194287.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.357 kcal (2) G-P(sol) polarization free energy of solvation -74.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds