Wall clock time and date at job start Tue Mar 31 2020 18:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00245 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00055 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47219 * 34.99842 * 10 9 7 12 12 C 1.52999 * 109.46890 * 275.00034 * 10 9 7 13 13 O 1.42903 * 109.46807 * 294.99741 * 12 10 9 14 14 C 1.52997 * 109.47167 * 154.99975 * 10 9 7 15 15 N 1.46505 * 109.46985 * 304.99505 * 14 10 9 16 16 C 1.34774 * 119.99861 * 180.02562 * 15 14 10 17 17 O 1.21286 * 120.00177 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.46500 * 109.47159 * 180.02562 * 18 16 15 20 20 C 1.34770 * 120.00354 * 180.02562 * 19 18 16 21 21 O 1.21289 * 119.99818 * 0.02562 * 20 19 18 22 22 C 1.50694 * 120.00429 * 179.97438 * 20 19 18 23 23 C 1.50702 * 109.47609 * 180.02562 * 22 20 19 24 24 C 1.38241 * 119.99552 * 269.72710 * 23 22 20 25 25 C 1.38240 * 119.99552 * 179.75849 * 24 23 22 26 26 C 1.38226 * 120.00013 * 0.51487 * 25 24 23 27 27 C 1.38233 * 120.00198 * 359.73564 * 26 25 24 28 28 C 1.38227 * 120.00210 * 0.02562 * 27 26 25 29 29 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 30 30 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47298 * 54.99525 * 12 10 9 32 32 H 1.08997 * 109.46949 * 174.99894 * 12 10 9 33 33 H 0.96702 * 113.99897 * 179.97438 * 13 12 10 34 34 H 1.08996 * 109.47726 * 64.99738 * 14 10 9 35 35 H 1.09001 * 109.46766 * 185.00478 * 14 10 9 36 36 H 0.96994 * 120.00104 * 0.02562 * 15 14 10 37 37 H 1.08997 * 109.47378 * 299.99789 * 18 16 15 38 38 H 1.09000 * 109.47199 * 60.00559 * 18 16 15 39 39 H 0.97005 * 120.00203 * 0.02562 * 19 18 16 40 40 H 1.09002 * 109.47330 * 299.99447 * 22 20 19 41 41 H 1.08996 * 109.47360 * 59.99711 * 22 20 19 42 42 H 1.08003 * 120.00074 * 359.97438 * 24 23 22 43 43 H 1.07998 * 119.99391 * 180.22608 * 25 24 23 44 44 H 1.08001 * 119.99882 * 179.72200 * 26 25 24 45 45 H 1.08006 * 120.00055 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.00536 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9709 -3.5519 0.5747 12 6 2.4163 -4.0324 -1.4507 13 8 1.2192 -4.2837 -2.1896 14 6 1.1830 -4.7535 0.5990 15 7 0.7416 -4.3398 1.9333 16 6 -0.0446 -5.1536 2.6654 17 8 -0.3863 -6.2286 2.2198 18 6 -0.4992 -4.7278 4.0377 19 7 -1.3358 -5.7784 4.6228 20 6 -1.8589 -5.6158 5.8542 21 8 -1.6373 -4.5994 6.4778 22 6 -2.7200 -6.6963 6.4558 23 6 -3.1755 -6.2701 7.8277 24 6 -2.4150 -6.5868 8.9378 25 6 -2.8304 -6.1916 10.1957 26 6 -4.0114 -5.4889 10.3445 27 6 -4.7744 -5.1767 9.2350 28 6 -4.3567 -5.5676 7.9766 29 1 -0.4851 -0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0015 31 1 2.9641 -3.2122 -1.9146 32 1 3.0368 -4.9285 -1.4486 33 1 1.3708 -4.5275 -3.1130 34 1 0.3130 -4.9200 -0.0361 35 1 1.7583 -5.6761 0.6765 36 1 1.0152 -3.4802 2.2898 37 1 0.3706 -4.5606 4.6729 38 1 -1.0750 -3.8056 3.9598 39 1 -1.5134 -6.5912 4.1239 40 1 -3.5897 -6.8638 5.8205 41 1 -2.1442 -7.6184 6.5340 42 1 -1.4947 -7.1401 8.8220 43 1 -2.2344 -6.4359 11.0626 44 1 -4.3381 -5.1840 11.3277 45 1 -5.6974 -4.6280 9.3513 46 1 -4.9530 -5.3241 7.1097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278194288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:32 Heat of formation + Delta-G solvation = -87.244867 kcal Electronic energy + Delta-G solvation = -27643.553094 eV Core-core repulsion = 23533.316139 eV Total energy + Delta-G solvation = -4110.236955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.36568 -39.57311 -38.67535 -37.30783 -35.16395 -34.46472 -33.81383 -33.12569 -31.54404 -31.07830 -29.24073 -28.09072 -26.89693 -24.85009 -23.47186 -22.78201 -21.97959 -20.52203 -20.42117 -20.20230 -17.97552 -17.65478 -17.04950 -16.78640 -16.48564 -16.12522 -16.09780 -15.62557 -15.46426 -15.08285 -14.65351 -14.47532 -14.10774 -13.75212 -13.72869 -13.61526 -13.50733 -13.34831 -13.24903 -12.96225 -12.74782 -12.63063 -12.13990 -11.85651 -11.55220 -11.35234 -11.20444 -10.93712 -10.79008 -10.51615 -10.10350 -10.05383 -9.89150 -9.56169 -9.27611 -9.23382 -9.08639 -9.03244 -8.92292 -8.81945 -7.15876 -6.17779 -3.20175 1.12576 1.23577 2.49561 2.66459 2.81453 3.46661 3.48149 3.50196 3.67530 3.69841 4.38358 4.57774 4.59324 4.70476 4.79976 4.80615 4.88808 4.91336 5.00081 5.18735 5.25352 5.28329 5.31290 5.37051 5.39729 5.44098 5.49540 5.74739 5.78875 5.84276 5.88122 5.89518 6.13291 6.21732 6.25465 6.32216 6.33927 6.37838 6.57177 6.66828 6.80578 7.36400 7.66227 7.68973 8.07102 8.09134 8.27917 8.67686 9.11240 9.98157 10.12931 11.29636 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013309 B = 0.002125 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.350023 B =13174.344181 C =14708.151884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.039 4.039 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.341 4.341 8 H 0.064 0.936 9 N -0.724 5.724 10 C 0.171 3.829 11 H 0.068 0.932 12 C 0.060 3.940 13 O -0.563 6.563 14 C 0.118 3.882 15 N -0.707 5.707 16 C 0.507 3.493 17 O -0.553 6.553 18 C 0.099 3.901 19 N -0.718 5.718 20 C 0.514 3.486 21 O -0.531 6.531 22 C -0.101 4.101 23 C -0.066 4.066 24 C -0.106 4.106 25 C -0.120 4.120 26 C -0.122 4.122 27 C -0.119 4.119 28 C -0.105 4.105 29 H 0.257 0.743 30 H 0.371 0.629 31 H 0.050 0.950 32 H 0.028 0.972 33 H 0.365 0.635 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.412 0.588 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.411 0.589 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.637 -16.143 13.620 21.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.238 4.238 3 Si 0.910 3.090 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.472 4.472 8 H 0.082 0.918 9 N -0.367 5.367 10 C 0.060 3.940 11 H 0.085 0.915 12 C -0.022 4.022 13 O -0.366 6.366 14 C -0.007 4.007 15 N -0.358 5.358 16 C 0.292 3.708 17 O -0.432 6.432 18 C -0.028 4.028 19 N -0.374 5.374 20 C 0.300 3.700 21 O -0.406 6.406 22 C -0.141 4.141 23 C -0.066 4.066 24 C -0.124 4.124 25 C -0.138 4.138 26 C -0.140 4.140 27 C -0.137 4.137 28 C -0.123 4.123 29 H 0.068 0.932 30 H 0.205 0.795 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.210 0.790 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.249 0.751 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.249 0.751 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.907 -14.302 14.325 20.616 hybrid contribution 0.453 -1.664 -0.896 1.943 sum -3.454 -15.966 13.429 21.146 Atomic orbital electron populations 1.70876 1.06067 1.28684 1.52483 1.25762 0.97001 1.00981 1.00025 0.83259 0.74249 0.75709 0.75813 1.21028 1.22188 1.22345 1.19997 0.91896 0.85669 1.49621 0.91755 1.42365 1.05038 1.00035 1.89270 1.20534 0.95017 0.86470 0.92019 0.91459 1.23018 0.86433 0.97401 0.95331 1.86541 1.32223 1.92032 1.25822 1.21610 0.99688 0.97141 0.82232 1.45925 1.50262 1.21797 1.17833 1.20409 0.78743 0.84748 0.86912 1.90657 1.57233 1.22863 1.72476 1.21066 0.96942 0.92534 0.92289 1.45709 1.51824 1.22087 1.17737 1.20518 0.80254 0.88409 0.80785 1.90761 1.59593 1.29421 1.60860 1.20655 1.00631 0.98172 0.94647 1.19272 0.95118 0.98736 0.93474 1.20988 0.98990 1.00080 0.92318 1.21097 0.96745 0.98799 0.97186 1.21144 0.95265 0.98872 0.98701 1.21112 1.00011 0.99995 0.92622 1.21009 0.96194 0.97509 0.97559 0.93166 0.79469 0.93184 0.95382 0.78979 0.90497 0.91814 0.75112 0.88405 0.88058 0.75113 0.87675 0.87739 0.86241 0.86118 0.86212 0.86056 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.11 13.70 55.49 0.76 -27.35 16 2 C -0.04 -1.08 5.50 -17.43 -0.10 -1.18 16 3 Si 1.08 25.03 29.92 -169.99 -5.09 19.94 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.30 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.34 -8.92 9.93 -15.06 -0.15 -9.07 16 8 H 0.06 1.65 7.83 -52.48 -0.41 1.23 16 9 N -0.72 -16.73 4.51 -53.43 -0.24 -16.97 16 10 C 0.17 3.14 2.84 -67.93 -0.19 2.94 16 11 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 12 C 0.06 1.00 6.86 37.16 0.25 1.26 16 13 O -0.56 -9.72 12.64 -35.23 -0.45 -10.16 16 14 C 0.12 1.97 5.12 -4.04 -0.02 1.95 16 15 N -0.71 -11.13 5.39 -60.29 -0.32 -11.46 16 16 C 0.51 7.66 7.90 -10.99 -0.09 7.57 16 17 O -0.55 -9.53 15.67 5.55 0.09 -9.44 16 18 C 0.10 1.29 6.15 -5.19 -0.03 1.26 16 19 N -0.72 -8.46 5.53 -61.48 -0.34 -8.80 16 20 C 0.51 6.30 7.82 -10.99 -0.09 6.21 16 21 O -0.53 -8.65 16.03 5.55 0.09 -8.56 16 22 C -0.10 -0.87 5.83 -29.04 -0.17 -1.04 16 23 C -0.07 -0.67 4.37 -104.62 -0.46 -1.13 16 24 C -0.11 -1.04 9.70 -39.58 -0.38 -1.43 16 25 C -0.12 -1.10 10.05 -39.59 -0.40 -1.50 16 26 C -0.12 -1.09 10.05 -39.59 -0.40 -1.49 16 27 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 28 C -0.10 -1.07 9.70 -39.59 -0.38 -1.45 16 29 H 0.26 7.67 6.77 -40.82 -0.28 7.39 16 30 H 0.37 9.30 6.63 -40.82 -0.27 9.03 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.37 4.52 9.12 45.56 0.42 4.94 16 34 H 0.08 1.45 7.39 -51.93 -0.38 1.07 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.41 6.61 8.14 -40.82 -0.33 6.27 16 37 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.41 4.41 7.44 -40.82 -0.30 4.11 16 40 H 0.11 0.70 8.08 -51.93 -0.42 0.28 16 41 H 0.10 0.66 8.08 -51.93 -0.42 0.24 16 42 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 43 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 45 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 46 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 395.13 15.07 5.95 5.95 Total: -1.00 -35.20 395.13 -8.39 -43.59 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: -5.85 Total: 21.88 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -3.00 Total: 1.38 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: -0.15 Total: -64.58 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.27 Total: -28.16 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.09 Total: 19.94 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.20 -8.39 -43.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278194288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.657 kcal (2) G-P(sol) polarization free energy of solvation -35.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds