Wall clock time and date at job start Tue Mar 31 2020 18:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00245 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00055 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47219 * 34.99842 * 10 9 7 12 12 C 1.52999 * 109.46890 * 275.00034 * 10 9 7 13 13 O 1.42903 * 109.46807 * 294.99741 * 12 10 9 14 14 C 1.52997 * 109.47167 * 154.99975 * 10 9 7 15 15 N 1.46505 * 109.46985 * 304.99505 * 14 10 9 16 16 C 1.34774 * 119.99861 * 180.02562 * 15 14 10 17 17 O 1.21286 * 120.00177 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.46500 * 109.47159 * 180.02562 * 18 16 15 20 20 C 1.34770 * 120.00354 * 180.02562 * 19 18 16 21 21 O 1.21289 * 119.99818 * 0.02562 * 20 19 18 22 22 C 1.50694 * 120.00429 * 179.97438 * 20 19 18 23 23 C 1.50702 * 109.47609 * 180.02562 * 22 20 19 24 24 C 1.38241 * 119.99552 * 269.72710 * 23 22 20 25 25 C 1.38240 * 119.99552 * 179.75849 * 24 23 22 26 26 C 1.38226 * 120.00013 * 0.51487 * 25 24 23 27 27 C 1.38233 * 120.00198 * 359.73564 * 26 25 24 28 28 C 1.38227 * 120.00210 * 0.02562 * 27 26 25 29 29 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 30 30 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47298 * 54.99525 * 12 10 9 32 32 H 1.08997 * 109.46949 * 174.99894 * 12 10 9 33 33 H 0.96702 * 113.99897 * 179.97438 * 13 12 10 34 34 H 1.08996 * 109.47726 * 64.99738 * 14 10 9 35 35 H 1.09001 * 109.46766 * 185.00478 * 14 10 9 36 36 H 0.96994 * 120.00104 * 0.02562 * 15 14 10 37 37 H 1.08997 * 109.47378 * 299.99789 * 18 16 15 38 38 H 1.09000 * 109.47199 * 60.00559 * 18 16 15 39 39 H 0.97005 * 120.00203 * 0.02562 * 19 18 16 40 40 H 1.09002 * 109.47330 * 299.99447 * 22 20 19 41 41 H 1.08996 * 109.47360 * 59.99711 * 22 20 19 42 42 H 1.08003 * 120.00074 * 359.97438 * 24 23 22 43 43 H 1.07998 * 119.99391 * 180.22608 * 25 24 23 44 44 H 1.08001 * 119.99882 * 179.72200 * 26 25 24 45 45 H 1.08006 * 120.00055 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.00536 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9709 -3.5519 0.5747 12 6 2.4163 -4.0324 -1.4507 13 8 1.2192 -4.2837 -2.1896 14 6 1.1830 -4.7535 0.5990 15 7 0.7416 -4.3398 1.9333 16 6 -0.0446 -5.1536 2.6654 17 8 -0.3863 -6.2286 2.2198 18 6 -0.4992 -4.7278 4.0377 19 7 -1.3358 -5.7784 4.6228 20 6 -1.8589 -5.6158 5.8542 21 8 -1.6373 -4.5994 6.4778 22 6 -2.7200 -6.6963 6.4558 23 6 -3.1755 -6.2701 7.8277 24 6 -2.4150 -6.5868 8.9378 25 6 -2.8304 -6.1916 10.1957 26 6 -4.0114 -5.4889 10.3445 27 6 -4.7744 -5.1767 9.2350 28 6 -4.3567 -5.5676 7.9766 29 1 -0.4851 -0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0015 31 1 2.9641 -3.2122 -1.9146 32 1 3.0368 -4.9285 -1.4486 33 1 1.3708 -4.5275 -3.1130 34 1 0.3130 -4.9200 -0.0361 35 1 1.7583 -5.6761 0.6765 36 1 1.0152 -3.4802 2.2898 37 1 0.3706 -4.5606 4.6729 38 1 -1.0750 -3.8056 3.9598 39 1 -1.5134 -6.5912 4.1239 40 1 -3.5897 -6.8638 5.8205 41 1 -2.1442 -7.6184 6.5340 42 1 -1.4947 -7.1401 8.8220 43 1 -2.2344 -6.4359 11.0626 44 1 -4.3381 -5.1840 11.3277 45 1 -5.6974 -4.6280 9.3513 46 1 -4.9530 -5.3241 7.1097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278194288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:31 Heat of formation + Delta-G solvation = -115.364627 kcal Electronic energy + Delta-G solvation = -27644.772459 eV Core-core repulsion = 23533.316139 eV Total energy + Delta-G solvation = -4111.456320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.40508 -40.63361 -39.55947 -38.74671 -36.59300 -35.65923 -35.37943 -33.86557 -33.21574 -31.75533 -30.47726 -29.51186 -27.89359 -26.14659 -25.42490 -23.46675 -22.77518 -21.85793 -21.57834 -21.34079 -19.59321 -18.92279 -18.27214 -17.88456 -17.57516 -17.27955 -17.16570 -16.79724 -16.45227 -16.04786 -15.93733 -15.70921 -15.53517 -15.38343 -15.00241 -14.91460 -14.59582 -14.26314 -14.17496 -13.94756 -13.91536 -13.39690 -13.36563 -13.06941 -12.89138 -12.71379 -12.54073 -12.08280 -12.00735 -11.89595 -11.85878 -11.28462 -11.21551 -11.13437 -10.94284 -10.78641 -10.33507 -10.12308 -9.78781 -9.63220 -9.11552 -8.33068 -5.28764 0.41672 0.53396 1.39930 1.57141 1.60836 1.69499 1.75913 1.85331 2.41427 2.73005 2.94254 3.42184 3.50469 3.56433 3.67117 3.73639 3.91088 3.95299 4.00791 4.17269 4.21095 4.29231 4.33488 4.34362 4.39349 4.47221 4.53263 4.58237 4.66106 4.74983 4.78891 4.90424 5.11588 5.13128 5.17492 5.19898 5.33876 5.57301 5.63651 5.63919 5.67282 6.13829 6.37437 6.44234 6.53092 6.96021 7.01148 7.10893 7.14629 8.00215 8.13889 9.17618 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013309 B = 0.002125 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.350023 B =13174.344181 C =14708.151884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.102 4.102 3 Si 1.124 2.876 4 H -0.301 1.301 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.324 4.324 8 H 0.072 0.928 9 N -0.733 5.733 10 C 0.165 3.835 11 H 0.078 0.922 12 C 0.065 3.935 13 O -0.585 6.585 14 C 0.130 3.870 15 N -0.708 5.708 16 C 0.512 3.488 17 O -0.572 6.572 18 C 0.105 3.895 19 N -0.712 5.712 20 C 0.515 3.485 21 O -0.575 6.575 22 C -0.094 4.094 23 C -0.083 4.083 24 C -0.121 4.121 25 C -0.130 4.130 26 C -0.131 4.131 27 C -0.132 4.132 28 C -0.124 4.124 29 H 0.243 0.757 30 H 0.359 0.641 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.387 0.613 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.411 0.589 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.418 0.582 40 H 0.127 0.873 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.438 -17.496 14.142 22.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.294 4.294 3 Si 0.950 3.050 4 H -0.227 1.227 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.456 4.456 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.055 3.945 11 H 0.096 0.904 12 C -0.016 4.016 13 O -0.392 6.392 14 C 0.006 3.994 15 N -0.359 5.359 16 C 0.298 3.702 17 O -0.452 6.452 18 C -0.023 4.023 19 N -0.367 5.367 20 C 0.303 3.697 21 O -0.454 6.454 22 C -0.133 4.133 23 C -0.083 4.083 24 C -0.139 4.139 25 C -0.148 4.148 26 C -0.148 4.148 27 C -0.150 4.150 28 C -0.142 4.142 29 H 0.054 0.946 30 H 0.191 0.809 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.235 0.765 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.248 0.752 37 H 0.126 0.874 38 H 0.112 0.888 39 H 0.257 0.743 40 H 0.145 0.855 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.158 0.842 44 H 0.158 0.842 45 H 0.155 0.845 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.662 -15.736 14.817 21.778 hybrid contribution 0.112 -1.357 -1.071 1.733 sum -2.551 -17.094 13.746 22.083 Atomic orbital electron populations 1.70991 1.07343 1.27883 1.56161 1.27018 0.97005 1.04487 1.00906 0.82657 0.73321 0.71954 0.77055 1.22729 1.20145 1.20747 1.20329 0.92339 0.86617 1.46284 0.90976 1.42476 1.04521 1.01044 1.89490 1.20808 0.95121 0.84945 0.93587 0.90411 1.22850 0.86506 0.98613 0.93610 1.86495 1.32813 1.92177 1.27684 1.21426 0.98649 0.97231 0.82130 1.45914 1.50517 1.21821 1.17603 1.20642 0.78020 0.84205 0.87311 1.90646 1.57841 1.23672 1.73070 1.20968 0.97431 0.92607 0.91271 1.45703 1.51378 1.21903 1.17739 1.21145 0.79753 0.88507 0.80264 1.90741 1.61310 1.31440 1.61916 1.20711 1.01023 0.97602 0.93981 1.19519 0.95351 0.99109 0.94323 1.21276 0.99528 1.00462 0.92644 1.21433 0.97081 0.98541 0.97771 1.21476 0.95199 0.98559 0.99610 1.21417 1.00813 1.00113 0.92655 1.21265 0.96720 0.98007 0.98252 0.94637 0.80939 0.94854 0.91349 0.76527 0.92729 0.89783 0.75244 0.87365 0.88815 0.74285 0.85537 0.85048 0.85059 0.84215 0.84174 0.84534 0.85590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -59.82 13.70 21.65 0.30 -59.53 16 2 C -0.10 -5.70 5.50 84.86 0.47 -5.23 16 3 Si 1.12 50.33 29.92 68.60 2.05 52.38 16 4 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 5 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.32 -16.79 9.93 84.03 0.83 -15.95 16 8 H 0.07 3.57 7.83 -2.91 -0.02 3.55 16 9 N -0.73 -33.76 4.51 -322.94 -1.46 -35.22 16 10 C 0.16 5.80 2.84 44.99 0.13 5.93 16 11 H 0.08 2.60 8.08 -2.38 -0.02 2.58 16 12 C 0.07 2.05 6.86 71.98 0.49 2.54 16 13 O -0.58 -19.37 12.64 -148.98 -1.88 -21.25 16 14 C 0.13 4.19 5.12 86.38 0.44 4.63 16 15 N -0.71 -21.83 5.39 -463.06 -2.49 -24.33 16 16 C 0.51 15.11 7.90 87.66 0.69 15.80 16 17 O -0.57 -19.09 15.67 -3.05 -0.05 -19.14 16 18 C 0.10 2.69 6.15 85.63 0.53 3.21 16 19 N -0.71 -16.08 5.53 -466.80 -2.58 -18.66 16 20 C 0.52 12.20 7.82 87.66 0.69 12.89 16 21 O -0.58 -18.76 16.03 -3.06 -0.05 -18.81 16 22 C -0.09 -1.48 5.83 29.10 0.17 -1.31 16 23 C -0.08 -1.63 4.37 -19.86 -0.09 -1.72 16 24 C -0.12 -2.27 9.70 22.27 0.22 -2.06 16 25 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 26 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 27 C -0.13 -2.41 10.05 22.27 0.22 -2.18 16 28 C -0.12 -2.48 9.70 22.27 0.22 -2.27 16 29 H 0.24 15.01 6.77 -92.71 -0.63 14.38 16 30 H 0.36 18.31 6.63 -92.71 -0.61 17.70 16 31 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.39 8.87 9.12 -74.06 -0.68 8.20 16 34 H 0.05 2.03 7.39 -2.39 -0.02 2.01 16 35 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.41 13.06 8.14 -92.71 -0.75 12.31 16 37 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.42 8.39 7.44 -92.70 -0.69 7.70 16 40 H 0.13 1.44 8.08 -2.39 -0.02 1.42 16 41 H 0.13 1.34 8.08 -2.39 -0.02 1.32 16 42 H 0.13 2.01 8.06 -2.91 -0.02 1.98 16 43 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 44 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 45 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 46 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -76.31 395.13 -2.26 -78.57 By element: Atomic # 1 Polarization: 57.26 SS G_CDS: -1.55 Total: 55.71 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 5.46 Total: 10.26 kcal Atomic # 7 Polarization: -131.50 SS G_CDS: -6.23 Total: -137.73 kcal Atomic # 8 Polarization: -57.21 SS G_CDS: -1.98 Total: -59.19 kcal Atomic # 14 Polarization: 50.33 SS G_CDS: 2.05 Total: 52.38 kcal Total: -76.31 -2.26 -78.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278194288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.795 kcal (2) G-P(sol) polarization free energy of solvation -76.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds