Wall clock time and date at job start Tue Mar 31 2020 18:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00081 * 2 1 4 4 H 1.48502 * 109.47348 * 269.99770 * 3 2 1 5 5 H 1.48497 * 109.47487 * 29.99883 * 3 2 1 6 6 H 1.48505 * 109.46970 * 150.00214 * 3 2 1 7 7 C 1.38813 * 119.99425 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99498 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00563 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64362 * 0.02562 * 9 7 2 11 11 C 1.54330 * 107.26840 * 178.90400 * 10 9 7 12 12 C 1.55155 * 102.94292 * 337.81024 * 11 10 9 13 13 O 1.42906 * 111.03447 * 277.41115 * 12 11 10 14 14 C 1.52998 * 111.00688 * 153.57723 * 12 11 10 15 15 N 1.46499 * 109.47155 * 191.34773 * 14 12 11 16 16 C 1.34774 * 119.99880 * 179.97438 * 15 14 12 17 17 O 1.21284 * 119.99989 * 359.97438 * 16 15 14 18 18 C 1.50705 * 119.99988 * 179.97438 * 16 15 14 19 19 C 1.53001 * 109.46785 * 180.02562 * 18 16 15 20 20 N 1.46499 * 109.46677 * 180.02562 * 19 18 16 21 21 C 1.35769 * 119.62752 * 269.72266 * 20 19 18 22 22 C 1.35345 * 120.70350 * 179.76228 * 21 20 19 23 23 C 1.40196 * 119.95089 * 0.51345 * 22 21 20 24 24 C 1.36405 * 119.26104 * 359.74725 * 23 22 21 25 25 C 1.34659 * 119.62562 * 90.00133 * 20 19 18 26 26 O 1.22057 * 119.98581 * 359.97438 * 25 20 19 27 27 C 1.47420 * 125.65209 * 179.97438 * 9 7 2 28 28 H 0.97001 * 119.99700 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.88351 * 298.31999 * 10 9 7 30 30 H 1.08998 * 109.88379 * 59.48789 * 10 9 7 31 31 H 1.08998 * 110.71700 * 96.16950 * 11 10 9 32 32 H 1.08991 * 110.72004 * 219.44241 * 11 10 9 33 33 H 0.96700 * 113.99958 * 173.66878 * 13 12 11 34 34 H 1.09000 * 109.46974 * 311.34938 * 14 12 11 35 35 H 1.08999 * 109.47378 * 71.34625 * 14 12 11 36 36 H 0.96999 * 120.00324 * 359.97438 * 15 14 12 37 37 H 1.08999 * 109.46911 * 300.00236 * 18 16 15 38 38 H 1.08999 * 109.46927 * 60.00139 * 18 16 15 39 39 H 1.08999 * 109.47413 * 299.99714 * 19 18 16 40 40 H 1.08999 * 109.47450 * 60.00245 * 19 18 16 41 41 H 1.07998 * 119.64252 * 0.02562 * 21 20 19 42 42 H 1.08004 * 120.02646 * 180.23925 * 22 21 20 43 43 H 1.07998 * 120.36659 * 179.77042 * 23 22 21 44 44 H 1.07999 * 120.33961 * 180.02562 * 24 23 22 45 45 H 1.08997 * 110.36858 * 323.00452 * 27 9 7 46 46 H 1.08997 * 110.36396 * 85.21439 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1377 -2.5327 -0.0005 11 6 -0.4487 -4.0441 -0.0283 12 6 0.8521 -4.6559 -0.6123 13 8 0.8602 -4.5774 -2.0392 14 6 1.0368 -6.1008 -0.1444 15 7 2.3877 -6.5550 -0.4835 16 6 2.7781 -7.8050 -0.1649 17 8 2.0113 -8.5537 0.4029 18 6 4.1676 -8.2725 -0.5142 19 6 4.3522 -9.7174 -0.0462 20 7 5.7031 -10.1716 -0.3852 21 6 5.9287 -10.7728 -1.5815 22 6 7.1690 -11.1965 -1.9190 23 6 8.2347 -11.0255 -1.0243 24 6 8.0051 -10.4260 0.1793 25 6 6.7060 -9.9931 0.4955 26 8 6.4867 -9.4551 1.5689 27 6 1.9332 -3.7312 0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5551 -2.0849 0.9013 30 1 -0.5571 -2.0517 -0.8841 31 1 -0.6325 -4.4185 0.9787 32 1 -1.2982 -4.2511 -0.6789 33 1 1.6924 -4.8581 -2.4438 34 1 0.8958 -6.1540 0.9351 35 1 0.3042 -6.7391 -0.6384 36 1 3.0011 -5.9561 -0.9373 37 1 4.3079 -8.2198 -1.5939 38 1 4.9005 -7.6339 -0.0210 39 1 4.2117 -9.7704 1.0334 40 1 3.6194 -10.3557 -0.5398 41 1 5.1104 -10.9105 -2.2727 42 1 7.3368 -11.6699 -2.8752 43 1 9.2263 -11.3644 -1.2852 44 1 8.8134 -10.2851 0.8815 45 1 2.8332 -3.7404 -0.6143 46 1 2.1673 -4.0416 1.0188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278781187.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:19 Heat of formation + Delta-G solvation = -55.022675 kcal Electronic energy + Delta-G solvation = -28483.078624 eV Core-core repulsion = 24374.238928 eV Total energy + Delta-G solvation = -4108.839696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.71723 -40.01297 -38.52273 -37.21844 -35.49141 -35.09796 -34.25158 -32.18109 -31.60009 -30.19747 -29.61608 -28.26129 -26.14330 -25.23589 -24.11168 -23.48015 -22.44969 -20.86999 -20.10535 -19.86430 -18.21957 -17.69899 -17.43075 -16.94612 -16.68847 -16.22867 -16.08705 -15.86528 -15.41057 -14.93074 -14.70454 -14.57633 -14.47461 -14.06559 -13.83372 -13.62153 -13.21415 -13.02971 -12.89030 -12.73086 -12.39747 -12.22837 -12.13185 -11.95138 -11.74483 -11.59136 -11.02215 -10.89983 -10.74702 -10.60280 -10.41982 -10.29383 -10.24077 -10.13105 -9.91267 -9.75810 -9.45889 -9.18620 -8.61366 -8.36226 -6.86210 -5.73686 -3.07591 0.43543 1.50248 2.17885 2.44166 3.04404 3.31482 3.38588 3.43317 3.45559 4.13543 4.23891 4.33533 4.44383 4.45623 4.49382 4.57936 4.70664 4.83993 4.85905 4.89781 5.01687 5.09594 5.31320 5.33498 5.45695 5.49032 5.58484 5.62320 5.69260 5.80141 5.88193 5.91588 6.12115 6.14009 6.24607 6.31560 6.39732 6.51422 6.56987 6.71016 7.28589 7.51003 7.61526 7.70747 7.81072 7.94336 8.01697 8.22813 9.18411 9.78446 10.43336 11.38009 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016406 B = 0.002209 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.258298 B =12674.320273 C =13662.499852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.181 3.819 11 C -0.128 4.128 12 C 0.101 3.899 13 O -0.537 6.537 14 C 0.104 3.896 15 N -0.724 5.724 16 C 0.521 3.479 17 O -0.542 6.542 18 C -0.157 4.157 19 C 0.106 3.894 20 N -0.496 5.496 21 C 0.134 3.866 22 C -0.236 4.236 23 C -0.018 4.018 24 C -0.244 4.244 25 C 0.510 3.490 26 O -0.546 6.546 27 C 0.116 3.884 28 H 0.253 0.747 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.364 0.636 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.401 0.599 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.162 0.838 42 H 0.145 0.855 43 H 0.134 0.866 44 H 0.148 0.852 45 H 0.037 0.963 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.886 -24.199 -6.990 27.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.324 5.324 10 C 0.057 3.943 11 C -0.167 4.167 12 C 0.059 3.941 13 O -0.341 6.341 14 C -0.020 4.020 15 N -0.375 5.375 16 C 0.306 3.694 17 O -0.419 6.419 18 C -0.198 4.198 19 C -0.015 4.015 20 N -0.207 5.207 21 C 0.007 3.993 22 C -0.259 4.259 23 C -0.040 4.040 24 C -0.266 4.266 25 C 0.311 3.689 26 O -0.428 6.428 27 C -0.011 4.011 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.210 0.790 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.235 0.765 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.129 0.871 40 H 0.119 0.881 41 H 0.180 0.820 42 H 0.162 0.838 43 H 0.152 0.848 44 H 0.165 0.835 45 H 0.055 0.945 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 10.459 -23.890 -5.735 26.702 hybrid contribution 1.433 0.994 -0.481 1.810 sum 11.892 -22.896 -6.216 26.538 Atomic orbital electron populations 1.69961 1.04895 1.25116 1.56703 1.24812 0.95742 0.97718 1.02058 0.86104 0.78566 0.83415 0.77560 1.21574 1.21618 1.20703 1.19018 0.90343 0.82333 1.44238 0.90526 1.44344 1.01647 0.99421 1.87026 1.21149 0.84223 0.87673 1.01289 1.22916 0.94808 0.99676 0.99262 1.22708 0.99340 0.90773 0.81262 1.86636 1.39433 1.89701 1.18316 1.22077 0.82829 0.95537 1.01560 1.46007 1.16304 1.14205 1.61025 1.20218 0.88630 0.81840 0.78698 1.90729 1.55135 1.54409 1.41667 1.21955 0.96165 0.97886 1.03780 1.21717 0.80365 0.94391 1.05065 1.45632 1.11529 1.48173 1.15370 1.22027 0.99092 0.91483 0.86695 1.20674 0.91892 1.10430 1.02879 1.21460 0.99319 0.91064 0.92107 1.22169 0.96588 1.07637 1.00159 1.17236 0.85585 0.81644 0.84391 1.91005 1.83734 1.45305 1.22766 1.22130 0.94073 0.87495 0.97369 0.93676 0.93734 0.93099 0.90886 0.90905 0.79040 0.90297 0.90642 0.76453 0.88286 0.87744 0.87129 0.88079 0.82035 0.83754 0.84832 0.83475 0.94494 0.95528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.12 10.31 55.49 0.57 -26.55 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.42 10.28 -15.06 -0.15 -6.57 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -15.10 3.39 -170.08 -0.58 -15.68 16 10 C 0.18 4.42 5.37 -3.06 -0.02 4.40 16 11 C -0.13 -2.38 6.16 -24.89 -0.15 -2.53 16 12 C 0.10 1.67 0.95 -88.48 -0.08 1.59 16 13 O -0.54 -8.90 13.18 -35.23 -0.46 -9.36 16 14 C 0.10 1.42 4.97 -4.04 -0.02 1.40 16 15 N -0.72 -8.14 5.19 -60.29 -0.31 -8.45 16 16 C 0.52 6.01 7.83 -10.98 -0.09 5.92 16 17 O -0.54 -8.14 15.98 5.55 0.09 -8.05 16 18 C -0.16 -1.30 6.02 -27.88 -0.17 -1.47 16 19 C 0.11 0.92 4.62 -4.04 -0.02 0.90 16 20 N -0.50 -4.05 2.58 -119.77 -0.31 -4.36 16 21 C 0.13 0.65 10.28 -16.84 -0.17 0.48 16 22 C -0.24 -1.01 10.01 -39.88 -0.40 -1.41 16 23 C -0.02 -0.10 10.10 -39.51 -0.40 -0.50 16 24 C -0.24 -2.06 9.99 -39.38 -0.39 -2.45 16 25 C 0.51 5.70 7.41 -15.45 -0.11 5.59 16 26 O -0.55 -8.49 16.64 4.87 0.08 -8.41 16 27 C 0.12 2.26 5.74 -2.54 -0.01 2.25 16 28 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.04 1.19 7.51 -51.93 -0.39 0.80 16 30 H 0.05 1.40 7.38 -51.93 -0.38 1.02 16 31 H 0.07 1.23 7.94 -51.93 -0.41 0.81 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.36 4.46 8.57 45.56 0.39 4.85 16 34 H 0.08 1.15 8.00 -51.93 -0.42 0.74 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.40 3.76 7.31 -40.82 -0.30 3.46 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.11 1.27 7.34 -51.93 -0.38 0.89 16 40 H 0.10 0.69 7.97 -51.93 -0.41 0.27 16 41 H 0.16 0.25 8.03 -52.49 -0.42 -0.17 16 42 H 0.14 0.25 8.06 -52.48 -0.42 -0.17 16 43 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 44 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 45 H 0.04 0.67 7.80 -51.93 -0.41 0.26 16 46 H 0.03 0.53 8.04 -51.93 -0.42 0.11 16 LS Contribution 382.15 15.07 5.76 5.76 Total: -1.00 -37.42 382.15 -8.53 -45.95 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.05 Total: 4.73 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -2.29 Total: 7.32 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.63 Total: -55.04 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.29 Total: -25.82 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.42 -8.53 -45.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278781187.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.070 kcal (2) G-P(sol) polarization free energy of solvation -37.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds