Wall clock time and date at job start Tue Mar 31 2020 18:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00081 * 2 1 4 4 H 1.48502 * 109.47348 * 269.99770 * 3 2 1 5 5 H 1.48497 * 109.47487 * 29.99883 * 3 2 1 6 6 H 1.48505 * 109.46970 * 150.00214 * 3 2 1 7 7 C 1.38813 * 119.99425 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99498 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00563 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64362 * 0.02562 * 9 7 2 11 11 C 1.54330 * 107.26840 * 178.90400 * 10 9 7 12 12 C 1.55155 * 102.94292 * 337.81024 * 11 10 9 13 13 O 1.42906 * 111.03447 * 277.41115 * 12 11 10 14 14 C 1.52998 * 111.00688 * 153.57723 * 12 11 10 15 15 N 1.46499 * 109.47155 * 191.34773 * 14 12 11 16 16 C 1.34774 * 119.99880 * 179.97438 * 15 14 12 17 17 O 1.21284 * 119.99989 * 359.97438 * 16 15 14 18 18 C 1.50705 * 119.99988 * 179.97438 * 16 15 14 19 19 C 1.53001 * 109.46785 * 180.02562 * 18 16 15 20 20 N 1.46499 * 109.46677 * 180.02562 * 19 18 16 21 21 C 1.35769 * 119.62752 * 269.72266 * 20 19 18 22 22 C 1.35345 * 120.70350 * 179.76228 * 21 20 19 23 23 C 1.40196 * 119.95089 * 0.51345 * 22 21 20 24 24 C 1.36405 * 119.26104 * 359.74725 * 23 22 21 25 25 C 1.34659 * 119.62562 * 90.00133 * 20 19 18 26 26 O 1.22057 * 119.98581 * 359.97438 * 25 20 19 27 27 C 1.47420 * 125.65209 * 179.97438 * 9 7 2 28 28 H 0.97001 * 119.99700 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.88351 * 298.31999 * 10 9 7 30 30 H 1.08998 * 109.88379 * 59.48789 * 10 9 7 31 31 H 1.08998 * 110.71700 * 96.16950 * 11 10 9 32 32 H 1.08991 * 110.72004 * 219.44241 * 11 10 9 33 33 H 0.96700 * 113.99958 * 173.66878 * 13 12 11 34 34 H 1.09000 * 109.46974 * 311.34938 * 14 12 11 35 35 H 1.08999 * 109.47378 * 71.34625 * 14 12 11 36 36 H 0.96999 * 120.00324 * 359.97438 * 15 14 12 37 37 H 1.08999 * 109.46911 * 300.00236 * 18 16 15 38 38 H 1.08999 * 109.46927 * 60.00139 * 18 16 15 39 39 H 1.08999 * 109.47413 * 299.99714 * 19 18 16 40 40 H 1.08999 * 109.47450 * 60.00245 * 19 18 16 41 41 H 1.07998 * 119.64252 * 0.02562 * 21 20 19 42 42 H 1.08004 * 120.02646 * 180.23925 * 22 21 20 43 43 H 1.07998 * 120.36659 * 179.77042 * 23 22 21 44 44 H 1.07999 * 120.33961 * 180.02562 * 24 23 22 45 45 H 1.08997 * 110.36858 * 323.00452 * 27 9 7 46 46 H 1.08997 * 110.36396 * 85.21439 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1377 -2.5327 -0.0005 11 6 -0.4487 -4.0441 -0.0283 12 6 0.8521 -4.6559 -0.6123 13 8 0.8602 -4.5774 -2.0392 14 6 1.0368 -6.1008 -0.1444 15 7 2.3877 -6.5550 -0.4835 16 6 2.7781 -7.8050 -0.1649 17 8 2.0113 -8.5537 0.4029 18 6 4.1676 -8.2725 -0.5142 19 6 4.3522 -9.7174 -0.0462 20 7 5.7031 -10.1716 -0.3852 21 6 5.9287 -10.7728 -1.5815 22 6 7.1690 -11.1965 -1.9190 23 6 8.2347 -11.0255 -1.0243 24 6 8.0051 -10.4260 0.1793 25 6 6.7060 -9.9931 0.4955 26 8 6.4867 -9.4551 1.5689 27 6 1.9332 -3.7312 0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5551 -2.0849 0.9013 30 1 -0.5571 -2.0517 -0.8841 31 1 -0.6325 -4.4185 0.9787 32 1 -1.2982 -4.2511 -0.6789 33 1 1.6924 -4.8581 -2.4438 34 1 0.8958 -6.1540 0.9351 35 1 0.3042 -6.7391 -0.6384 36 1 3.0011 -5.9561 -0.9373 37 1 4.3079 -8.2198 -1.5939 38 1 4.9005 -7.6339 -0.0210 39 1 4.2117 -9.7704 1.0334 40 1 3.6194 -10.3557 -0.5398 41 1 5.1104 -10.9105 -2.2727 42 1 7.3368 -11.6699 -2.8752 43 1 9.2263 -11.3644 -1.2852 44 1 8.8134 -10.2851 0.8815 45 1 2.8332 -3.7404 -0.6143 46 1 2.1673 -4.0416 1.0188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278781187.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:18 Heat of formation + Delta-G solvation = -84.589966 kcal Electronic energy + Delta-G solvation = -28484.360758 eV Core-core repulsion = 24374.238928 eV Total energy + Delta-G solvation = -4110.121830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.34855 -41.08191 -39.88900 -37.95926 -36.78409 -36.03306 -35.36378 -34.01687 -32.39416 -31.34901 -30.72329 -29.70062 -27.60534 -26.37562 -25.05999 -24.52053 -23.16628 -22.30080 -21.44113 -21.26905 -19.09532 -18.77527 -18.34065 -18.24500 -17.50458 -17.10449 -17.00393 -16.75171 -16.73421 -16.38303 -15.93823 -15.69559 -15.39294 -15.25682 -15.04126 -14.73884 -14.43866 -14.24196 -13.91357 -13.79580 -13.55052 -13.25924 -13.21633 -12.94939 -12.82130 -12.76942 -12.69136 -12.36402 -12.26085 -12.12148 -12.02238 -11.82091 -11.75156 -11.23061 -11.00155 -10.99401 -10.83633 -10.70534 -10.19940 -8.94542 -8.90974 -7.86496 -5.22161 -0.04371 0.95732 1.44707 1.46824 1.51517 1.55308 1.55782 2.16599 2.47653 2.72255 3.17471 3.32286 3.45172 3.56771 3.62976 3.67663 3.79211 3.90778 3.95514 3.96022 4.03201 4.21428 4.33061 4.38874 4.47840 4.51373 4.57883 4.64652 4.71589 4.78998 4.79864 4.92449 4.95708 5.06876 5.11870 5.23835 5.28917 5.42402 5.44677 5.62258 5.70550 5.74754 6.13166 6.17344 6.39559 6.83393 7.01129 7.07700 7.11853 7.74916 8.38744 9.24163 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016406 B = 0.002209 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.258298 B =12674.320273 C =13662.499852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.980 3.020 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.242 4.242 8 H 0.085 0.915 9 N -0.621 5.621 10 C 0.189 3.811 11 C -0.122 4.122 12 C 0.124 3.876 13 O -0.551 6.551 14 C 0.119 3.881 15 N -0.716 5.716 16 C 0.523 3.477 17 O -0.578 6.578 18 C -0.144 4.144 19 C 0.108 3.892 20 N -0.492 5.492 21 C 0.131 3.869 22 C -0.229 4.229 23 C 0.007 3.993 24 C -0.285 4.285 25 C 0.491 3.509 26 O -0.615 6.615 27 C 0.111 3.889 28 H 0.246 0.754 29 H 0.007 0.993 30 H 0.009 0.991 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.385 0.615 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.412 0.588 37 H 0.140 0.860 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.125 0.875 41 H 0.204 0.796 42 H 0.183 0.817 43 H 0.165 0.835 44 H 0.140 0.860 45 H 0.056 0.944 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.659 -26.523 -9.916 31.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.262 4.262 3 Si 0.808 3.192 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.371 4.371 8 H 0.103 0.897 9 N -0.347 5.347 10 C 0.064 3.936 11 C -0.160 4.160 12 C 0.081 3.919 13 O -0.358 6.358 14 C -0.005 4.005 15 N -0.369 5.369 16 C 0.310 3.690 17 O -0.458 6.458 18 C -0.184 4.184 19 C -0.014 4.014 20 N -0.201 5.201 21 C 0.005 3.995 22 C -0.251 4.251 23 C -0.015 4.015 24 C -0.307 4.307 25 C 0.296 3.704 26 O -0.503 6.503 27 C -0.015 4.015 28 H 0.056 0.944 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.234 0.766 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.249 0.751 37 H 0.157 0.843 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.143 0.857 41 H 0.221 0.779 42 H 0.200 0.800 43 H 0.182 0.818 44 H 0.157 0.843 45 H 0.075 0.925 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 12.291 -26.265 -8.724 30.283 hybrid contribution 0.932 1.608 0.311 1.884 sum 13.223 -24.658 -8.413 29.217 Atomic orbital electron populations 1.70197 1.06394 1.25264 1.58218 1.25692 0.96627 1.01198 1.02651 0.85058 0.77614 0.79025 0.77502 1.21152 1.22257 1.19287 1.19456 0.91015 0.83636 1.42982 0.89738 1.44639 1.02233 1.00974 1.86900 1.20843 0.84004 0.91203 0.97553 1.22799 0.96506 0.95586 1.01117 1.22350 0.96527 0.91660 0.81320 1.86602 1.41182 1.90023 1.18022 1.21742 0.84405 0.93370 1.01024 1.45884 1.15568 1.14476 1.60967 1.20692 0.89401 0.81286 0.77653 1.90721 1.56459 1.55393 1.43200 1.21888 0.93374 0.97130 1.06050 1.21642 0.81207 0.95354 1.03186 1.45574 1.10592 1.47849 1.16115 1.22816 1.00979 0.90086 0.85573 1.21209 0.91028 1.09097 1.03779 1.21888 1.01278 0.87898 0.90409 1.22106 0.95440 1.10966 1.02166 1.17693 0.86987 0.81602 0.84131 1.90952 1.84771 1.49002 1.25535 1.22360 0.95570 0.85459 0.98081 0.94444 0.97435 0.97257 0.88961 0.89742 0.76645 0.91048 0.89917 0.75111 0.84252 0.88785 0.90956 0.85664 0.77888 0.79978 0.81763 0.84261 0.92548 0.95277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.30 10.31 21.65 0.22 -58.07 16 2 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 3 Si 0.98 46.11 29.55 68.60 2.03 48.13 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.24 -13.54 10.28 84.03 0.86 -12.67 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 9 N -0.62 -31.66 3.39 -692.01 -2.35 -34.01 16 10 C 0.19 9.53 5.37 86.73 0.47 9.99 16 11 C -0.12 -4.45 6.16 31.78 0.20 -4.25 16 12 C 0.12 3.86 0.95 -9.41 -0.01 3.85 16 13 O -0.55 -16.98 13.18 -148.98 -1.96 -18.94 16 14 C 0.12 3.00 4.97 86.38 0.43 3.43 16 15 N -0.72 -14.29 5.19 -463.06 -2.40 -16.69 16 16 C 0.52 11.02 7.83 87.66 0.69 11.71 16 17 O -0.58 -16.68 15.98 -3.04 -0.05 -16.73 16 18 C -0.14 -2.07 6.02 29.85 0.18 -1.89 16 19 C 0.11 1.74 4.62 86.38 0.40 2.14 16 20 N -0.49 -7.28 2.58 -650.98 -1.68 -8.96 16 21 C 0.13 0.72 10.28 83.42 0.86 1.58 16 22 C -0.23 -0.87 10.01 22.08 0.22 -0.65 16 23 C 0.01 0.05 10.10 22.32 0.23 0.28 16 24 C -0.29 -4.79 9.99 22.40 0.22 -4.57 16 25 C 0.49 11.34 7.41 84.82 0.63 11.97 16 26 O -0.61 -20.82 16.64 -5.50 -0.09 -20.91 16 27 C 0.11 4.17 5.74 86.85 0.50 4.67 16 28 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 29 H 0.01 0.42 7.51 -2.39 -0.02 0.40 16 30 H 0.01 0.53 7.38 -2.39 -0.02 0.51 16 31 H 0.09 3.01 7.94 -2.39 -0.02 3.00 16 32 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.38 8.17 8.57 -74.06 -0.63 7.54 16 34 H 0.07 1.96 8.00 -2.39 -0.02 1.94 16 35 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 36 H 0.41 6.43 7.31 -92.71 -0.68 5.75 16 37 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 1.76 7.34 -2.39 -0.02 1.74 16 40 H 0.13 1.37 7.97 -2.39 -0.02 1.35 16 41 H 0.20 -0.62 8.03 -2.91 -0.02 -0.64 16 42 H 0.18 -0.59 8.06 -2.91 -0.02 -0.61 16 43 H 0.16 0.23 8.06 -2.91 -0.02 0.21 16 44 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 45 H 0.06 1.90 7.80 -2.39 -0.02 1.88 16 46 H 0.03 1.11 8.04 -2.39 -0.02 1.09 16 Total: -1.00 -88.54 382.15 -0.26 -88.80 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -0.30 Total: 15.29 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: 6.33 Total: 22.09 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -6.21 Total: -117.73 kcal Atomic # 8 Polarization: -54.49 SS G_CDS: -2.10 Total: -56.59 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -88.54 -0.26 -88.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278781187.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.215 kcal (2) G-P(sol) polarization free energy of solvation -88.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds