Wall clock time and date at job start Tue Mar 31 2020 19:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00170 * 2 1 4 4 H 1.48492 * 109.47175 * 270.00095 * 3 2 1 5 5 H 1.48504 * 109.46897 * 29.99864 * 3 2 1 6 6 H 1.48499 * 109.47160 * 149.99877 * 3 2 1 7 7 C 1.38816 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99824 * 164.47858 * 7 2 1 9 9 N 1.36940 * 119.99712 * 344.47735 * 7 2 1 10 10 C 1.47132 * 121.53393 * 336.23276 * 9 7 2 11 11 C 1.50319 * 109.10018 * 223.15538 * 10 9 7 12 12 C 1.29451 * 123.65529 * 348.55136 * 11 10 9 13 13 C 1.50706 * 117.69288 * 181.13868 * 12 11 10 14 14 N 1.46494 * 109.47477 * 94.99671 * 13 12 11 15 15 C 1.34778 * 120.00050 * 179.97438 * 14 13 12 16 16 O 1.21279 * 119.99967 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99683 * 179.97438 * 15 14 13 18 18 C 1.53005 * 109.46645 * 179.97438 * 17 15 14 19 19 N 1.46501 * 109.46731 * 179.97438 * 18 17 15 20 20 C 1.33868 * 122.76747 * 269.71092 * 19 18 17 21 21 O 1.21228 * 125.39406 * 359.97438 * 20 19 18 22 22 C 1.51320 * 109.21047 * 179.84513 * 20 19 18 23 23 C 1.54223 * 103.55097 * 0.38711 * 22 20 19 24 24 C 1.33880 * 122.75708 * 90.00466 * 19 18 17 25 25 O 1.21231 * 125.39916 * 359.97438 * 24 19 18 26 26 C 1.49968 * 124.61276 * 1.10540 * 12 11 10 27 27 C 1.47337 * 121.37458 * 156.00669 * 9 7 2 28 28 H 0.97003 * 119.99843 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.71024 * 103.17463 * 10 9 7 30 30 H 1.08988 * 109.38976 * 342.94935 * 10 9 7 31 31 H 1.08004 * 118.17296 * 168.81984 * 11 10 9 32 32 H 1.09001 * 109.46678 * 214.99256 * 13 12 11 33 33 H 1.08996 * 109.46954 * 334.99032 * 13 12 11 34 34 H 0.97004 * 120.00178 * 359.97438 * 14 13 12 35 35 H 1.09001 * 109.47332 * 299.99789 * 17 15 14 36 36 H 1.09004 * 109.47085 * 60.00227 * 17 15 14 37 37 H 1.09001 * 109.47301 * 300.00075 * 18 17 15 38 38 H 1.09004 * 109.46976 * 60.00427 * 18 17 15 39 39 H 1.08999 * 110.79346 * 241.77810 * 22 20 19 40 40 H 1.08993 * 110.54888 * 118.87741 * 22 20 19 41 41 H 1.09002 * 110.60904 * 241.25848 * 23 22 20 42 42 H 1.09001 * 110.60907 * 118.29539 * 23 22 20 43 43 H 1.08996 * 109.31096 * 101.31763 * 26 12 11 44 44 H 1.08994 * 109.31663 * 220.74860 * 26 12 11 45 45 H 1.08998 * 109.78002 * 358.61379 * 27 9 7 46 46 H 1.09002 * 109.77673 * 237.81378 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0606 -1.2191 -0.2508 9 7 1.3630 -2.3666 0.3163 10 6 0.1406 -2.3692 1.1352 11 6 0.2245 -3.4835 2.1407 12 6 1.1204 -4.4171 2.1038 13 6 1.0638 -5.4845 3.1662 14 7 0.3203 -6.6401 2.6584 15 6 0.1418 -7.7232 3.4404 16 8 0.5970 -7.7412 4.5644 17 6 -0.6236 -8.9117 2.9182 18 6 -0.6798 -9.9959 3.9964 19 7 -1.4243 -11.1510 3.4889 20 6 -2.7481 -11.2823 3.6382 21 8 -3.4742 -10.4870 4.1949 22 6 -3.1951 -12.5790 2.9992 23 6 -1.8846 -13.1856 2.4576 24 6 -0.8358 -12.1651 2.8426 25 8 0.3495 -12.2519 2.6034 26 6 2.2102 -4.5120 1.0779 27 6 1.8589 -3.6722 -0.1531 28 1 -0.4850 0.8401 0.0004 29 1 -0.7296 -2.5199 0.4963 30 1 0.0512 -1.4154 1.6550 31 1 -0.5059 -3.5088 2.9359 32 1 2.0767 -5.7906 3.4279 33 1 0.5633 -5.0905 4.0507 34 1 -0.0434 -6.6259 1.7592 35 1 -1.6366 -8.6055 2.6572 36 1 -0.1236 -9.3055 2.0332 37 1 0.3334 -10.3020 4.2570 38 1 -1.1795 -9.6024 4.8816 39 1 -3.8947 -12.3884 2.1853 40 1 -3.6439 -13.2373 3.7429 41 1 -1.9322 -13.2968 1.3744 42 1 -1.6800 -14.1444 2.9340 43 1 3.1431 -4.1481 1.5083 44 1 2.3356 -5.5530 0.7802 45 1 2.7474 -3.5297 -0.7682 46 1 1.0845 -4.1740 -0.7333 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279600702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:07 Heat of formation + Delta-G solvation = -63.664595 kcal Electronic energy + Delta-G solvation = -28048.347756 eV Core-core repulsion = 23939.133318 eV Total energy + Delta-G solvation = -4109.214438 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.33606 -39.79486 -39.00831 -37.82233 -36.33861 -35.07895 -34.53746 -32.95235 -31.29903 -30.63244 -29.73269 -27.12665 -26.69276 -25.08588 -23.73095 -22.85741 -22.74466 -21.14170 -20.56245 -19.85706 -18.11585 -17.67831 -17.42707 -16.94596 -16.93615 -15.99873 -15.83177 -15.61062 -15.15005 -14.99488 -14.68566 -14.47240 -14.41486 -14.08836 -14.03296 -13.73999 -13.47483 -13.40483 -13.20331 -12.87096 -12.79613 -12.28368 -12.07003 -11.95423 -11.61683 -11.59644 -11.38212 -11.10725 -10.94458 -10.74897 -10.49753 -10.44713 -10.35847 -10.34715 -9.96486 -9.86084 -9.62751 -9.03044 -8.71373 -8.09963 -6.78635 -5.83143 -3.21741 1.02910 1.98113 2.20709 2.54647 2.57605 3.36077 3.43176 3.45627 3.48407 3.54813 3.69127 3.86788 4.25485 4.43276 4.46818 4.57537 4.66630 4.88382 5.00347 5.00872 5.06533 5.07991 5.17565 5.25838 5.32705 5.37103 5.54216 5.55665 5.79097 5.90894 6.03341 6.13204 6.29923 6.35651 6.39757 6.48959 6.69619 6.82871 6.83293 7.12285 7.21800 7.28011 7.28726 7.49703 7.69369 7.78681 8.14485 8.34348 9.15768 9.78557 10.36669 11.27428 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026080 B = 0.001872 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.371013 B =14952.892266 C =15132.632216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.002 4.002 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.246 4.246 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.193 3.807 11 C -0.123 4.123 12 C -0.167 4.167 13 C 0.157 3.843 14 N -0.718 5.718 15 C 0.518 3.482 16 O -0.546 6.546 17 C -0.157 4.157 18 C 0.115 3.885 19 N -0.576 5.576 20 C 0.524 3.476 21 O -0.476 6.476 22 C -0.157 4.157 23 C -0.157 4.157 24 C 0.524 3.476 25 O -0.477 6.477 26 C -0.090 4.090 27 C 0.143 3.857 28 H 0.254 0.746 29 H 0.042 0.958 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.402 0.598 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.057 0.943 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.829 -27.408 4.326 28.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.735 3.265 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.068 3.932 11 C -0.144 4.144 12 C -0.168 4.168 13 C 0.034 3.966 14 N -0.369 5.369 15 C 0.303 3.697 16 O -0.424 6.424 17 C -0.198 4.198 18 C -0.006 4.006 19 N -0.319 5.319 20 C 0.312 3.688 21 O -0.347 6.347 22 C -0.197 4.197 23 C -0.197 4.197 24 C 0.313 3.687 25 O -0.348 6.348 26 C -0.129 4.129 27 C 0.017 3.983 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.237 0.763 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -6.315 -26.829 5.323 28.072 hybrid contribution 0.190 0.990 -0.399 1.084 sum -6.125 -25.839 4.924 27.008 Atomic orbital electron populations 1.70003 1.05186 1.25563 1.54772 1.24995 0.95416 0.98340 1.01229 0.86250 0.79083 0.83510 0.77680 1.21424 1.21550 1.20518 1.19168 0.92244 0.84312 1.41772 0.91335 1.44165 1.28984 1.01199 1.57478 1.19788 0.88719 0.94910 0.89767 1.23296 0.95784 0.96647 0.98666 1.20491 1.00054 0.97224 0.99025 1.20479 0.96140 0.84359 0.95588 1.46184 1.56355 1.16203 1.18124 1.20233 0.80182 0.83694 0.85609 1.90715 1.50479 1.81892 1.19322 1.21936 1.02559 0.94691 1.00606 1.21501 0.98657 0.83608 0.96860 1.46844 1.10729 1.21933 1.52386 1.20895 0.81216 0.88348 0.78294 1.90821 1.57156 1.46880 1.39873 1.22483 0.98965 0.94852 1.03383 1.22488 0.92284 0.99576 1.05322 1.20901 0.89274 0.82627 0.75934 1.90817 1.15423 1.76866 1.51705 1.20752 0.96645 0.98995 0.96510 1.20955 0.97365 0.87227 0.92775 0.93579 0.94072 0.88803 0.88766 0.91497 0.91568 0.76320 0.88247 0.88265 0.87856 0.87848 0.85966 0.86100 0.85993 0.86080 0.91719 0.92900 0.92429 0.95970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.98 11.07 55.49 0.61 -25.37 16 2 C 0.00 -0.06 5.01 -17.43 -0.09 -0.14 16 3 Si 0.90 21.61 29.58 -169.99 -5.03 16.58 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.67 9.71 -15.06 -0.15 -6.82 16 8 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 9 N -0.60 -14.67 3.01 -173.58 -0.52 -15.19 16 10 C 0.19 4.50 5.25 -5.03 -0.03 4.47 16 11 C -0.12 -2.31 9.47 -35.78 -0.34 -2.65 16 12 C -0.17 -2.82 5.22 -100.99 -0.53 -3.35 16 13 C 0.16 2.33 5.66 -5.19 -0.03 2.30 16 14 N -0.72 -9.07 5.55 -61.47 -0.34 -9.42 16 15 C 0.52 6.68 7.83 -10.98 -0.09 6.59 16 16 O -0.55 -8.96 15.98 5.56 0.09 -8.87 16 17 C -0.16 -1.48 6.02 -27.88 -0.17 -1.65 16 18 C 0.11 1.12 4.85 -4.04 -0.02 1.10 16 19 N -0.58 -4.47 2.55 -115.33 -0.29 -4.76 16 20 C 0.52 3.78 8.08 -11.09 -0.09 3.69 16 21 O -0.48 -5.31 17.47 5.60 0.10 -5.21 16 22 C -0.16 -0.35 7.03 -26.94 -0.19 -0.54 16 23 C -0.16 -0.35 7.03 -26.94 -0.19 -0.54 16 24 C 0.52 3.73 8.08 -11.08 -0.09 3.64 16 25 O -0.48 -5.23 17.48 5.60 0.10 -5.13 16 26 C -0.09 -1.54 5.95 -28.18 -0.17 -1.71 16 27 C 0.14 2.90 6.57 -3.53 -0.02 2.88 16 28 H 0.25 7.03 8.31 -40.82 -0.34 6.70 16 29 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.09 2.45 6.39 -51.94 -0.33 2.12 16 31 H 0.09 1.60 7.73 -52.48 -0.41 1.19 16 32 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 33 H 0.07 1.02 7.78 -51.93 -0.40 0.62 16 34 H 0.40 4.40 8.46 -40.82 -0.35 4.05 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.10 7.79 -51.93 -0.40 0.69 16 38 H 0.10 1.11 7.78 -51.93 -0.40 0.70 16 39 H 0.12 0.08 8.14 -51.93 -0.42 -0.34 16 40 H 0.12 0.07 8.14 -51.93 -0.42 -0.35 16 41 H 0.12 0.08 8.14 -51.93 -0.42 -0.35 16 42 H 0.12 0.07 8.14 -51.93 -0.42 -0.36 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 385.39 15.07 5.81 5.81 Total: -1.00 -34.94 385.39 -8.56 -43.51 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.91 Total: 0.77 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -2.18 Total: 7.28 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.54 Total: -54.74 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.28 Total: -19.21 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.94 -8.56 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279600702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.156 kcal (2) G-P(sol) polarization free energy of solvation -34.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds