Wall clock time and date at job start Tue Mar 31 2020 19:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00170 * 2 1 4 4 H 1.48492 * 109.47175 * 270.00095 * 3 2 1 5 5 H 1.48504 * 109.46897 * 29.99864 * 3 2 1 6 6 H 1.48499 * 109.47160 * 149.99877 * 3 2 1 7 7 C 1.38816 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99824 * 164.47858 * 7 2 1 9 9 N 1.36940 * 119.99712 * 344.47735 * 7 2 1 10 10 C 1.47132 * 121.53393 * 336.23276 * 9 7 2 11 11 C 1.50319 * 109.10018 * 223.15538 * 10 9 7 12 12 C 1.29451 * 123.65529 * 348.55136 * 11 10 9 13 13 C 1.50706 * 117.69288 * 181.13868 * 12 11 10 14 14 N 1.46494 * 109.47477 * 94.99671 * 13 12 11 15 15 C 1.34778 * 120.00050 * 179.97438 * 14 13 12 16 16 O 1.21279 * 119.99967 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99683 * 179.97438 * 15 14 13 18 18 C 1.53005 * 109.46645 * 179.97438 * 17 15 14 19 19 N 1.46501 * 109.46731 * 179.97438 * 18 17 15 20 20 C 1.33868 * 122.76747 * 269.71092 * 19 18 17 21 21 O 1.21228 * 125.39406 * 359.97438 * 20 19 18 22 22 C 1.51320 * 109.21047 * 179.84513 * 20 19 18 23 23 C 1.54223 * 103.55097 * 0.38711 * 22 20 19 24 24 C 1.33880 * 122.75708 * 90.00466 * 19 18 17 25 25 O 1.21231 * 125.39916 * 359.97438 * 24 19 18 26 26 C 1.49968 * 124.61276 * 1.10540 * 12 11 10 27 27 C 1.47337 * 121.37458 * 156.00669 * 9 7 2 28 28 H 0.97003 * 119.99843 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.71024 * 103.17463 * 10 9 7 30 30 H 1.08988 * 109.38976 * 342.94935 * 10 9 7 31 31 H 1.08004 * 118.17296 * 168.81984 * 11 10 9 32 32 H 1.09001 * 109.46678 * 214.99256 * 13 12 11 33 33 H 1.08996 * 109.46954 * 334.99032 * 13 12 11 34 34 H 0.97004 * 120.00178 * 359.97438 * 14 13 12 35 35 H 1.09001 * 109.47332 * 299.99789 * 17 15 14 36 36 H 1.09004 * 109.47085 * 60.00227 * 17 15 14 37 37 H 1.09001 * 109.47301 * 300.00075 * 18 17 15 38 38 H 1.09004 * 109.46976 * 60.00427 * 18 17 15 39 39 H 1.08999 * 110.79346 * 241.77810 * 22 20 19 40 40 H 1.08993 * 110.54888 * 118.87741 * 22 20 19 41 41 H 1.09002 * 110.60904 * 241.25848 * 23 22 20 42 42 H 1.09001 * 110.60907 * 118.29539 * 23 22 20 43 43 H 1.08996 * 109.31096 * 101.31763 * 26 12 11 44 44 H 1.08994 * 109.31663 * 220.74860 * 26 12 11 45 45 H 1.08998 * 109.78002 * 358.61379 * 27 9 7 46 46 H 1.09002 * 109.77673 * 237.81378 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0606 -1.2191 -0.2508 9 7 1.3630 -2.3666 0.3163 10 6 0.1406 -2.3692 1.1352 11 6 0.2245 -3.4835 2.1407 12 6 1.1204 -4.4171 2.1038 13 6 1.0638 -5.4845 3.1662 14 7 0.3203 -6.6401 2.6584 15 6 0.1418 -7.7232 3.4404 16 8 0.5970 -7.7412 4.5644 17 6 -0.6236 -8.9117 2.9182 18 6 -0.6798 -9.9959 3.9964 19 7 -1.4243 -11.1510 3.4889 20 6 -2.7481 -11.2823 3.6382 21 8 -3.4742 -10.4870 4.1949 22 6 -3.1951 -12.5790 2.9992 23 6 -1.8846 -13.1856 2.4576 24 6 -0.8358 -12.1651 2.8426 25 8 0.3495 -12.2519 2.6034 26 6 2.2102 -4.5120 1.0779 27 6 1.8589 -3.6722 -0.1531 28 1 -0.4850 0.8401 0.0004 29 1 -0.7296 -2.5199 0.4963 30 1 0.0512 -1.4154 1.6550 31 1 -0.5059 -3.5088 2.9359 32 1 2.0767 -5.7906 3.4279 33 1 0.5633 -5.0905 4.0507 34 1 -0.0434 -6.6259 1.7592 35 1 -1.6366 -8.6055 2.6572 36 1 -0.1236 -9.3055 2.0332 37 1 0.3334 -10.3020 4.2570 38 1 -1.1795 -9.6024 4.8816 39 1 -3.8947 -12.3884 2.1853 40 1 -3.6439 -13.2373 3.7429 41 1 -1.9322 -13.2968 1.3744 42 1 -1.6800 -14.1444 2.9340 43 1 3.1431 -4.1481 1.5083 44 1 2.3356 -5.5530 0.7802 45 1 2.7474 -3.5297 -0.7682 46 1 1.0845 -4.1740 -0.7333 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279600702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:07 Heat of formation + Delta-G solvation = -88.037421 kcal Electronic energy + Delta-G solvation = -28049.404641 eV Core-core repulsion = 23939.133318 eV Total energy + Delta-G solvation = -4110.271323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.88408 -40.90979 -39.65297 -39.38155 -37.01605 -36.48601 -35.13313 -34.57735 -32.75092 -31.65658 -31.34864 -28.64006 -27.08196 -26.40576 -25.04567 -24.33049 -23.28677 -22.82795 -21.60806 -20.43990 -19.53464 -18.87166 -18.07038 -17.83910 -17.53964 -17.26116 -17.10913 -16.88874 -16.67889 -15.86921 -15.62723 -15.48027 -15.29161 -15.24678 -14.99373 -14.87942 -14.79929 -14.51272 -14.23595 -13.95654 -13.65856 -13.56277 -13.41413 -13.28894 -12.93741 -12.80790 -12.59799 -12.43114 -12.26163 -12.12831 -12.06673 -11.72824 -11.69259 -11.33154 -11.20622 -11.08047 -10.89576 -10.69960 -10.17283 -9.68263 -8.77233 -7.90267 -5.31147 0.49838 1.11456 1.45417 1.46487 1.47500 1.50568 1.56683 1.69611 2.41047 2.49819 3.23147 3.27109 3.30023 3.56344 3.59830 3.66448 3.77672 3.81943 3.88591 3.94237 4.22530 4.29741 4.35893 4.40478 4.50120 4.52202 4.63184 4.72002 4.76547 4.81482 4.82403 4.89513 4.94407 4.98259 5.08048 5.18915 5.30718 5.38387 5.45789 5.59725 5.73973 5.81821 6.13531 6.32109 6.32565 6.45135 6.72842 7.11286 7.11754 7.81408 8.35450 9.18406 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026080 B = 0.001872 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.371013 B =14952.892266 C =15132.632216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.056 4.056 3 Si 0.968 3.032 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.272 1.272 7 C -0.256 4.256 8 H 0.071 0.929 9 N -0.615 5.615 10 C 0.204 3.796 11 C -0.141 4.141 12 C -0.139 4.139 13 C 0.166 3.834 14 N -0.710 5.710 15 C 0.518 3.482 16 O -0.583 6.583 17 C -0.143 4.143 18 C 0.114 3.886 19 N -0.579 5.579 20 C 0.518 3.482 21 O -0.524 6.524 22 C -0.141 4.141 23 C -0.140 4.140 24 C 0.519 3.481 25 O -0.522 6.522 26 C -0.084 4.084 27 C 0.138 3.862 28 H 0.250 0.750 29 H 0.016 0.984 30 H 0.057 0.943 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.414 0.586 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.059 0.941 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.966 -30.332 3.674 31.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.250 4.250 3 Si 0.796 3.204 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.197 1.197 7 C -0.386 4.386 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.079 3.921 11 C -0.162 4.162 12 C -0.140 4.140 13 C 0.043 3.957 14 N -0.362 5.362 15 C 0.305 3.695 16 O -0.464 6.464 17 C -0.183 4.183 18 C -0.008 4.008 19 N -0.322 5.322 20 C 0.310 3.690 21 O -0.398 6.398 22 C -0.180 4.180 23 C -0.179 4.179 24 C 0.311 3.689 25 O -0.396 6.396 26 C -0.123 4.123 27 C 0.013 3.987 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.130 0.870 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.250 0.750 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.166 0.834 42 H 0.164 0.836 43 H 0.081 0.919 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.456 -29.805 4.638 30.847 hybrid contribution 0.277 1.817 -0.205 1.849 sum -6.179 -27.988 4.433 29.003 Atomic orbital electron populations 1.70161 1.06477 1.25804 1.56155 1.25749 0.96205 1.01367 1.01723 0.85262 0.77951 0.79592 0.77573 1.21039 1.21985 1.19741 1.19500 0.92569 0.85592 1.40962 0.91175 1.44449 1.29184 1.02168 1.58153 1.19432 0.87684 0.94999 0.89978 1.22958 0.98113 0.96190 0.98928 1.20598 0.98336 0.96549 0.98507 1.20242 0.96588 0.84334 0.94527 1.46030 1.56005 1.15490 1.18657 1.20751 0.79604 0.84222 0.84957 1.90703 1.52039 1.82588 1.21024 1.21850 1.02766 0.93008 1.00718 1.21281 0.98059 0.84772 0.96683 1.47032 1.11224 1.21548 1.52365 1.21837 0.80420 0.89459 0.77264 1.90801 1.57971 1.48911 1.42077 1.22605 0.99353 0.91789 1.04212 1.22610 0.89698 0.98583 1.07013 1.21827 0.89535 0.82936 0.74618 1.90797 1.17601 1.77753 1.53471 1.20692 0.96281 1.00330 0.94964 1.21146 0.97434 0.85800 0.94333 0.94108 0.96651 0.92474 0.87048 0.91279 0.92044 0.74986 0.86912 0.86600 0.89320 0.89531 0.83475 0.83687 0.83450 0.83631 0.91896 0.89354 0.92221 0.95338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.37 11.07 21.65 0.24 -55.13 16 2 C -0.06 -3.12 5.01 84.86 0.43 -2.69 16 3 Si 0.97 45.13 29.58 68.60 2.03 47.15 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.26 -14.08 9.71 84.03 0.82 -13.27 16 8 H 0.07 3.74 7.88 -2.92 -0.02 3.71 16 9 N -0.62 -30.69 3.01 -703.09 -2.12 -32.81 16 10 C 0.20 9.82 5.25 85.39 0.45 10.27 16 11 C -0.14 -5.27 9.47 27.11 0.26 -5.02 16 12 C -0.14 -4.48 5.22 -15.13 -0.08 -4.56 16 13 C 0.17 4.65 5.66 85.64 0.48 5.13 16 14 N -0.71 -16.62 5.55 -466.79 -2.59 -19.21 16 15 C 0.52 12.85 7.83 87.66 0.69 13.53 16 16 O -0.58 -19.08 15.98 -3.03 -0.05 -19.13 16 17 C -0.14 -2.54 6.02 29.85 0.18 -2.36 16 18 C 0.11 2.24 4.85 86.38 0.42 2.66 16 19 N -0.58 -8.36 2.55 -756.63 -1.93 -10.29 16 20 C 0.52 6.63 8.08 88.00 0.71 7.34 16 21 O -0.52 -11.42 17.47 -2.87 -0.05 -11.47 16 22 C -0.14 -0.07 7.03 30.46 0.21 0.14 16 23 C -0.14 -0.04 7.03 30.46 0.21 0.17 16 24 C 0.52 6.44 8.08 87.99 0.71 7.15 16 25 O -0.52 -10.99 17.48 -2.88 -0.05 -11.04 16 26 C -0.08 -2.69 5.95 29.65 0.18 -2.51 16 27 C 0.14 5.45 6.57 86.25 0.57 6.02 16 28 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.06 3.13 6.39 -2.39 -0.02 3.12 16 31 H 0.11 3.74 7.73 -2.91 -0.02 3.72 16 32 H 0.07 1.96 8.11 -2.39 -0.02 1.94 16 33 H 0.06 1.82 7.78 -2.39 -0.02 1.80 16 34 H 0.41 7.99 8.46 -92.71 -0.78 7.21 16 35 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.09 1.97 7.79 -2.39 -0.02 1.95 16 38 H 0.09 1.96 7.78 -2.38 -0.02 1.94 16 39 H 0.15 -0.52 8.14 -2.39 -0.02 -0.54 16 40 H 0.15 -0.50 8.14 -2.39 -0.02 -0.52 16 41 H 0.15 -0.57 8.14 -2.39 -0.02 -0.59 16 42 H 0.15 -0.54 8.14 -2.39 -0.02 -0.56 16 43 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.06 2.30 7.96 -2.39 -0.02 2.28 16 46 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -80.08 385.39 1.93 -78.15 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.22 Total: 11.77 kcal Atomic # 6 Polarization: 15.78 SS G_CDS: 6.23 Total: 22.01 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -6.40 Total: -117.45 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -0.15 Total: -41.64 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -80.08 1.93 -78.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279600702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.885 kcal (2) G-P(sol) polarization free energy of solvation -80.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds