Wall clock time and date at job start Tue Mar 31 2020 19:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 120.00019 * 2 1 4 4 H 1.48496 * 109.47172 * 240.00423 * 3 2 1 5 5 H 1.48502 * 109.47066 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46852 * 120.00158 * 3 2 1 7 7 C 1.38808 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99911 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99903 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00209 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47620 * 175.04270 * 10 9 7 12 12 N 1.46498 * 109.46764 * 305.42184 * 11 10 9 13 13 C 1.34778 * 120.00190 * 303.92373 * 12 11 10 14 14 O 1.21603 * 119.99673 * 354.66718 * 13 12 11 15 15 C 1.47487 * 120.00318 * 174.66569 * 13 12 11 16 16 C 1.37811 * 126.77218 * 0.03099 * 15 13 12 17 17 O 1.33492 * 108.34043 * 179.97438 * 16 15 13 18 18 C 1.34881 * 109.89054 * 359.97438 * 17 16 15 19 19 C 1.46774 * 125.65389 * 179.97438 * 18 17 16 20 20 N 1.34773 * 119.99935 * 0.03498 * 19 18 17 21 21 O 1.21685 * 119.99786 * 180.02562 * 19 18 17 22 22 C 1.36063 * 108.69121 * 0.02562 * 18 17 16 23 23 C 1.53008 * 109.46996 * 65.41944 * 11 10 9 24 24 C 1.52999 * 109.46958 * 180.02562 * 23 11 10 25 25 C 1.52996 * 109.46945 * 299.99983 * 24 23 11 26 26 C 1.52999 * 109.47701 * 60.00172 * 25 24 23 27 27 C 1.52997 * 109.47573 * 185.41942 * 11 10 9 28 28 H 0.96998 * 119.99622 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00100 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.46998 * 55.03836 * 10 9 7 31 31 H 1.09005 * 109.46860 * 295.04173 * 10 9 7 32 32 H 0.97001 * 120.00131 * 123.92713 * 12 11 10 33 33 H 1.08003 * 125.82998 * 0.02562 * 16 15 13 34 34 H 0.97000 * 120.00577 * 359.97438 * 20 19 18 35 35 H 0.97002 * 119.99808 * 179.97438 * 20 19 18 36 36 H 1.07996 * 126.68677 * 179.97438 * 22 18 17 37 37 H 1.08999 * 109.47036 * 300.00222 * 23 11 10 38 38 H 1.08994 * 109.47184 * 60.00503 * 23 11 10 39 39 H 1.08993 * 109.47281 * 179.97438 * 24 23 11 40 40 H 1.08998 * 109.47293 * 59.99604 * 24 23 11 41 41 H 1.09003 * 109.47520 * 299.99962 * 25 24 23 42 42 H 1.09004 * 109.47281 * 180.02562 * 25 24 23 43 43 H 1.08999 * 109.47459 * 179.97438 * 26 25 24 44 44 H 1.09003 * 109.46805 * 59.99352 * 26 25 24 45 45 H 1.09007 * 109.47014 * 300.00454 * 27 11 10 46 46 H 1.09001 * 109.46838 * 59.99261 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0685 -4.8170 0.1241 12 7 0.2293 -4.6179 1.3083 13 6 0.7993 -4.4602 2.5194 14 8 2.0029 -4.5796 2.6451 15 6 -0.0367 -4.1428 3.6923 16 6 -1.4048 -3.9779 3.7099 17 8 -1.7785 -3.7011 4.9612 18 6 -0.6982 -3.6793 5.7685 19 6 -0.7135 -3.4089 7.2111 20 7 -1.8798 -3.1546 7.8366 21 8 0.3269 -3.4147 7.8422 22 6 0.4083 -3.9483 5.0237 23 6 0.1850 -4.8701 -1.1240 24 6 -0.8049 -6.0300 -0.9991 25 6 -0.0351 -7.3451 -0.8628 26 6 0.8484 -7.2921 0.3852 27 6 1.8387 -6.1319 0.2600 28 1 -0.4849 0.8401 0.0004 29 1 0.3556 -2.3880 -0.0005 30 1 2.7496 -3.6770 0.8417 31 1 2.6164 -3.7539 -0.9317 32 1 -0.7366 -4.5996 1.2208 33 1 -2.0625 -4.0595 2.8571 34 1 -2.7092 -3.1497 7.3335 35 1 -1.8900 -2.9763 8.7900 36 1 1.4270 -4.0028 5.3781 37 1 -0.3638 -3.9333 -1.2208 38 1 0.8093 -5.0182 -2.0050 39 1 -1.4346 -6.0676 -1.8879 40 1 -1.4292 -5.8815 -0.1180 41 1 0.5893 -7.4936 -1.7439 42 1 -0.7403 -8.1715 -0.7743 43 1 1.3965 -8.2292 0.4825 44 1 0.2241 -7.1435 1.2663 45 1 2.4632 -6.2800 -0.6211 46 1 2.4682 -6.0940 1.1491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282616431.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:03 Heat of formation + Delta-G solvation = -57.637517 kcal Electronic energy + Delta-G solvation = -30053.945711 eV Core-core repulsion = 25944.992627 eV Total energy + Delta-G solvation = -4108.953084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.84242 -40.23443 -39.31734 -37.58454 -34.64077 -34.07579 -33.35401 -32.98513 -31.35490 -30.67453 -30.01796 -29.03922 -25.26155 -23.89883 -23.84079 -22.99373 -22.24422 -20.98758 -20.62296 -20.03131 -18.85327 -18.74591 -17.30034 -17.14515 -16.56006 -16.43684 -16.12847 -15.42885 -15.05886 -14.66235 -14.48913 -14.46505 -14.33167 -13.87643 -13.61998 -13.48229 -13.21141 -13.18150 -12.92801 -12.63247 -12.27284 -12.13696 -12.01549 -11.71236 -11.27433 -10.98169 -10.85347 -10.75467 -10.66618 -10.52756 -10.20211 -10.09331 -10.05528 -9.98385 -9.94768 -9.62099 -9.32121 -8.84277 -8.75290 -8.51671 -6.82269 -5.72194 -2.97515 0.88272 1.68911 2.45853 2.97926 3.20054 3.48098 3.50164 3.51915 3.54333 3.75698 4.48878 4.59880 4.64382 4.82857 4.88277 4.92306 4.95731 5.30161 5.34275 5.43275 5.46361 5.61655 5.63707 5.64757 5.70193 5.71211 5.79105 5.85730 6.10319 6.13070 6.13944 6.22687 6.30508 6.33070 6.36537 6.40771 6.51730 6.57192 6.60499 6.68263 6.94367 7.04952 7.13286 7.77064 7.89310 7.90536 8.47994 8.64014 9.59654 10.17168 10.53146 11.51144 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007303 B = 0.004935 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3833.022269 B = 5672.571680 C = 8429.025752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.015 4.015 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.228 4.228 8 H 0.067 0.933 9 N -0.724 5.724 10 C 0.138 3.862 11 C 0.180 3.820 12 N -0.704 5.704 13 C 0.596 3.404 14 O -0.524 6.524 15 C -0.224 4.224 16 C 0.048 3.952 17 O -0.156 6.156 18 C -0.101 4.101 19 C 0.614 3.386 20 N -0.845 5.845 21 O -0.521 6.521 22 C -0.055 4.055 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.113 4.113 27 C -0.128 4.128 28 H 0.253 0.747 29 H 0.381 0.619 30 H 0.049 0.951 31 H 0.020 0.980 32 H 0.391 0.609 33 H 0.219 0.781 34 H 0.407 0.593 35 H 0.408 0.592 36 H 0.169 0.831 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.524 -14.903 6.102 18.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.210 4.210 3 Si 0.735 3.265 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.359 4.359 8 H 0.085 0.915 9 N -0.368 5.368 10 C 0.010 3.990 11 C 0.094 3.906 12 N -0.355 5.355 13 C 0.383 3.617 14 O -0.401 6.401 15 C -0.229 4.229 16 C -0.025 4.025 17 O -0.050 6.050 18 C -0.152 4.152 19 C 0.399 3.601 20 N -0.409 5.409 21 O -0.398 6.398 22 C -0.076 4.076 23 C -0.158 4.158 24 C -0.156 4.156 25 C -0.156 4.156 26 C -0.151 4.151 27 C -0.167 4.167 28 H 0.062 0.938 29 H 0.215 0.785 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.225 0.775 33 H 0.236 0.764 34 H 0.236 0.764 35 H 0.240 0.760 36 H 0.187 0.813 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.035 -14.828 6.556 18.095 hybrid contribution -0.714 1.253 -0.127 1.448 sum -8.749 -13.575 6.428 17.383 Atomic orbital electron populations 1.69626 1.04990 1.25442 1.58713 1.24640 0.95499 0.97408 1.03478 0.86302 0.78562 0.83735 0.77862 1.21366 1.21815 1.21387 1.19191 0.91013 0.84211 1.41530 0.91451 1.42191 1.05527 0.99709 1.89385 1.21122 0.93730 0.85130 0.99021 1.20563 0.91122 0.95237 0.83658 1.45702 1.09466 1.73877 1.06460 1.16953 0.86867 0.76280 0.81603 1.90727 1.14152 1.50248 1.84996 1.20869 0.93585 1.12593 0.95825 1.25070 0.95333 0.96925 0.85181 1.83856 1.35097 1.68092 1.17971 1.21691 0.85491 1.16204 0.91826 1.16480 0.84160 0.76071 0.83368 1.43658 1.09228 1.74332 1.13648 1.90944 1.32077 1.52144 1.64684 1.21894 0.99876 0.95140 0.90715 1.21795 0.97971 0.99015 0.97014 1.21553 0.97841 0.94868 1.01371 1.21550 0.98506 0.97089 0.98450 1.21462 0.97777 0.98027 0.97815 1.21924 0.98140 0.93203 1.03452 0.93755 0.78516 0.93290 0.96246 0.77486 0.76428 0.76411 0.76023 0.81313 0.90181 0.90481 0.91948 0.92441 0.92079 0.92595 0.92534 0.92264 0.91432 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.88 13.06 55.49 0.72 -27.15 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.90 23.00 29.55 -169.99 -5.02 17.98 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.23 -6.49 9.99 -15.06 -0.15 -6.64 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.72 -18.01 5.18 -59.91 -0.31 -18.32 16 10 C 0.14 2.89 4.79 -4.04 -0.02 2.87 16 11 C 0.18 2.81 0.32 -131.82 -0.04 2.77 16 12 N -0.70 -10.43 3.56 -48.65 -0.17 -10.60 16 13 C 0.60 10.33 7.22 -12.49 -0.09 10.24 16 14 O -0.52 -10.89 13.23 5.28 0.07 -10.82 16 15 C -0.22 -3.40 6.16 -104.95 -0.65 -4.04 16 16 C 0.05 0.55 11.64 30.58 0.36 0.90 16 17 O -0.16 -1.79 10.32 6.21 0.06 -1.73 16 18 C -0.10 -1.36 7.09 -36.91 -0.26 -1.62 16 19 C 0.61 7.85 8.06 -12.81 -0.10 7.75 16 20 N -0.85 -6.70 8.87 30.28 0.27 -6.43 16 21 O -0.52 -8.53 17.68 5.20 0.09 -8.44 16 22 C -0.06 -0.86 10.41 -39.03 -0.41 -1.26 16 23 C -0.12 -1.65 4.67 -26.73 -0.12 -1.77 16 24 C -0.12 -1.24 5.75 -26.73 -0.15 -1.40 16 25 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 26 C -0.11 -1.29 5.77 -26.71 -0.15 -1.44 16 27 C -0.13 -1.81 4.58 -26.71 -0.12 -1.93 16 28 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.38 9.58 6.46 -40.82 -0.26 9.32 16 30 H 0.05 1.16 6.25 -51.93 -0.32 0.83 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.39 4.70 6.16 -40.82 -0.25 4.44 16 33 H 0.22 1.59 7.47 -52.48 -0.39 1.20 16 34 H 0.41 2.31 8.57 -40.82 -0.35 1.96 16 35 H 0.41 2.46 8.93 -40.82 -0.36 2.09 16 36 H 0.17 2.73 8.06 -52.49 -0.42 2.31 16 37 H 0.08 1.27 7.11 -51.93 -0.37 0.90 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.55 6.78 -51.93 -0.35 0.19 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.69 7.60 -51.93 -0.39 0.30 16 45 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 46 H 0.08 1.38 6.28 -51.93 -0.33 1.06 16 LS Contribution 373.48 15.07 5.63 5.63 Total: -1.00 -36.11 373.48 -7.15 -43.26 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -6.32 Total: 14.08 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -2.17 Total: 2.54 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: 0.51 Total: -62.51 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: 0.23 Total: -20.98 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.11 -7.15 -43.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282616431.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.376 kcal (2) G-P(sol) polarization free energy of solvation -36.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds