Wall clock time and date at job start Tue Mar 31 2020 19:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 120.00019 * 2 1 4 4 H 1.48496 * 109.47172 * 240.00423 * 3 2 1 5 5 H 1.48502 * 109.47066 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46852 * 120.00158 * 3 2 1 7 7 C 1.38808 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99911 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99903 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00209 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47620 * 175.04270 * 10 9 7 12 12 N 1.46498 * 109.46764 * 305.42184 * 11 10 9 13 13 C 1.34778 * 120.00190 * 303.92373 * 12 11 10 14 14 O 1.21603 * 119.99673 * 354.66718 * 13 12 11 15 15 C 1.47487 * 120.00318 * 174.66569 * 13 12 11 16 16 C 1.37811 * 126.77218 * 0.03099 * 15 13 12 17 17 O 1.33492 * 108.34043 * 179.97438 * 16 15 13 18 18 C 1.34881 * 109.89054 * 359.97438 * 17 16 15 19 19 C 1.46774 * 125.65389 * 179.97438 * 18 17 16 20 20 N 1.34773 * 119.99935 * 0.03498 * 19 18 17 21 21 O 1.21685 * 119.99786 * 180.02562 * 19 18 17 22 22 C 1.36063 * 108.69121 * 0.02562 * 18 17 16 23 23 C 1.53008 * 109.46996 * 65.41944 * 11 10 9 24 24 C 1.52999 * 109.46958 * 180.02562 * 23 11 10 25 25 C 1.52996 * 109.46945 * 299.99983 * 24 23 11 26 26 C 1.52999 * 109.47701 * 60.00172 * 25 24 23 27 27 C 1.52997 * 109.47573 * 185.41942 * 11 10 9 28 28 H 0.96998 * 119.99622 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00100 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.46998 * 55.03836 * 10 9 7 31 31 H 1.09005 * 109.46860 * 295.04173 * 10 9 7 32 32 H 0.97001 * 120.00131 * 123.92713 * 12 11 10 33 33 H 1.08003 * 125.82998 * 0.02562 * 16 15 13 34 34 H 0.97000 * 120.00577 * 359.97438 * 20 19 18 35 35 H 0.97002 * 119.99808 * 179.97438 * 20 19 18 36 36 H 1.07996 * 126.68677 * 179.97438 * 22 18 17 37 37 H 1.08999 * 109.47036 * 300.00222 * 23 11 10 38 38 H 1.08994 * 109.47184 * 60.00503 * 23 11 10 39 39 H 1.08993 * 109.47281 * 179.97438 * 24 23 11 40 40 H 1.08998 * 109.47293 * 59.99604 * 24 23 11 41 41 H 1.09003 * 109.47520 * 299.99962 * 25 24 23 42 42 H 1.09004 * 109.47281 * 180.02562 * 25 24 23 43 43 H 1.08999 * 109.47459 * 179.97438 * 26 25 24 44 44 H 1.09003 * 109.46805 * 59.99352 * 26 25 24 45 45 H 1.09007 * 109.47014 * 300.00454 * 27 11 10 46 46 H 1.09001 * 109.46838 * 59.99261 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0685 -4.8170 0.1241 12 7 0.2293 -4.6179 1.3083 13 6 0.7993 -4.4602 2.5194 14 8 2.0029 -4.5796 2.6451 15 6 -0.0367 -4.1428 3.6923 16 6 -1.4048 -3.9779 3.7099 17 8 -1.7785 -3.7011 4.9612 18 6 -0.6982 -3.6793 5.7685 19 6 -0.7135 -3.4089 7.2111 20 7 -1.8798 -3.1546 7.8366 21 8 0.3269 -3.4147 7.8422 22 6 0.4083 -3.9483 5.0237 23 6 0.1850 -4.8701 -1.1240 24 6 -0.8049 -6.0300 -0.9991 25 6 -0.0351 -7.3451 -0.8628 26 6 0.8484 -7.2921 0.3852 27 6 1.8387 -6.1319 0.2600 28 1 -0.4849 0.8401 0.0004 29 1 0.3556 -2.3880 -0.0005 30 1 2.7496 -3.6770 0.8417 31 1 2.6164 -3.7539 -0.9317 32 1 -0.7366 -4.5996 1.2208 33 1 -2.0625 -4.0595 2.8571 34 1 -2.7092 -3.1497 7.3335 35 1 -1.8900 -2.9763 8.7900 36 1 1.4270 -4.0028 5.3781 37 1 -0.3638 -3.9333 -1.2208 38 1 0.8093 -5.0182 -2.0050 39 1 -1.4346 -6.0676 -1.8879 40 1 -1.4292 -5.8815 -0.1180 41 1 0.5893 -7.4936 -1.7439 42 1 -0.7403 -8.1715 -0.7743 43 1 1.3965 -8.2292 0.4825 44 1 0.2241 -7.1435 1.2663 45 1 2.4632 -6.2800 -0.6211 46 1 2.4682 -6.0940 1.1491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282616431.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:02 Heat of formation + Delta-G solvation = -85.898555 kcal Electronic energy + Delta-G solvation = -30055.171202 eV Core-core repulsion = 25944.992627 eV Total energy + Delta-G solvation = -4110.178575 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.89695 -41.50922 -40.35274 -38.83494 -36.38118 -35.04103 -34.70956 -34.19825 -33.08793 -31.71180 -31.33842 -30.36323 -27.01238 -25.10484 -24.84994 -24.66114 -23.41775 -22.11592 -21.85686 -21.08257 -20.02832 -19.85728 -19.21797 -18.17801 -17.59704 -17.43861 -17.26797 -16.84586 -16.51463 -16.14268 -15.83714 -15.54673 -15.52295 -15.17355 -14.91778 -14.89600 -14.68898 -14.43305 -14.32104 -13.83390 -13.73198 -13.42846 -13.13211 -13.01148 -12.84055 -12.74825 -12.55371 -12.13752 -11.97053 -11.87098 -11.76202 -11.42582 -11.22041 -11.19246 -11.10149 -10.96005 -10.90183 -10.52842 -9.96798 -9.78097 -8.92405 -7.94858 -5.19258 -0.14333 0.51205 1.43199 1.43395 1.45944 1.51465 1.92359 2.08784 2.44297 2.52314 2.56406 3.37569 3.43352 3.65270 3.71161 3.85286 3.90155 3.95540 4.13267 4.28545 4.30047 4.37486 4.50437 4.57512 4.64273 4.66017 4.71604 4.83192 4.89337 4.91575 4.94868 5.15081 5.19681 5.24818 5.29527 5.35125 5.42046 5.44183 5.47460 5.53951 5.57126 5.72306 5.74619 6.23455 6.28856 6.68634 7.06586 7.35775 7.37192 8.10514 8.41279 9.27679 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007303 B = 0.004935 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3833.022269 B = 5672.571680 C = 8429.025752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.063 4.063 3 Si 0.961 3.039 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.244 4.244 8 H 0.057 0.943 9 N -0.725 5.725 10 C 0.138 3.862 11 C 0.187 3.813 12 N -0.691 5.691 13 C 0.590 3.410 14 O -0.572 6.572 15 C -0.262 4.262 16 C 0.086 3.914 17 O -0.137 6.137 18 C -0.095 4.095 19 C 0.612 3.388 20 N -0.815 5.815 21 O -0.566 6.566 22 C -0.086 4.086 23 C -0.113 4.113 24 C -0.112 4.112 25 C -0.113 4.113 26 C -0.107 4.107 27 C -0.124 4.124 28 H 0.251 0.749 29 H 0.380 0.620 30 H 0.016 0.984 31 H 0.017 0.983 32 H 0.407 0.593 33 H 0.267 0.733 34 H 0.422 0.578 35 H 0.421 0.579 36 H 0.147 0.853 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.593 -15.784 5.460 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.256 4.256 3 Si 0.791 3.209 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.376 4.376 8 H 0.075 0.925 9 N -0.368 5.368 10 C 0.011 3.989 11 C 0.101 3.899 12 N -0.342 5.342 13 C 0.379 3.621 14 O -0.452 6.452 15 C -0.267 4.267 16 C 0.012 3.988 17 O -0.030 6.030 18 C -0.147 4.147 19 C 0.397 3.603 20 N -0.379 5.379 21 O -0.446 6.446 22 C -0.107 4.107 23 C -0.151 4.151 24 C -0.150 4.150 25 C -0.150 4.150 26 C -0.144 4.144 27 C -0.163 4.163 28 H 0.060 0.940 29 H 0.213 0.787 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.244 0.756 33 H 0.283 0.717 34 H 0.254 0.746 35 H 0.255 0.745 36 H 0.164 0.836 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.184 -15.724 5.912 20.181 hybrid contribution 0.253 1.527 0.081 1.550 sum -10.931 -14.197 5.994 18.894 Atomic orbital electron populations 1.69731 1.05820 1.25876 1.59434 1.25294 0.96435 1.00054 1.03804 0.85406 0.77509 0.80268 0.77742 1.20495 1.21390 1.21745 1.19446 0.90953 0.85901 1.41293 0.92455 1.42201 1.05460 1.00078 1.89079 1.21169 0.94611 0.85867 0.97287 1.20427 0.90807 0.93600 0.85061 1.45556 1.10228 1.72947 1.05484 1.17347 0.86596 0.75534 0.82663 1.90705 1.16283 1.52431 1.85791 1.20774 0.95286 1.15762 0.94834 1.25845 0.94244 0.92839 0.85843 1.83899 1.33890 1.67341 1.17828 1.21645 0.85219 1.15521 0.92292 1.16473 0.84725 0.76111 0.83020 1.43433 1.08297 1.71830 1.14355 1.90926 1.33903 1.54448 1.65373 1.21862 0.99876 0.97098 0.91874 1.21723 0.98119 0.99760 0.95505 1.21545 0.97134 0.93346 1.02955 1.21529 0.98579 0.97488 0.97430 1.21425 0.97324 0.96852 0.98839 1.21851 0.98532 0.93640 1.02251 0.93969 0.78669 0.96549 0.96538 0.75563 0.71723 0.74619 0.74508 0.83559 0.92285 0.90562 0.90162 0.91005 0.91756 0.90197 0.91497 0.92376 0.90927 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.80 13.06 21.65 0.28 -56.51 16 2 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 3 Si 0.96 47.56 29.55 68.60 2.03 49.59 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 6 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 7 C -0.24 -14.19 9.99 84.03 0.84 -13.35 16 8 H 0.06 3.38 7.83 -2.91 -0.02 3.35 16 9 N -0.72 -36.93 5.18 -343.45 -1.78 -38.71 16 10 C 0.14 6.02 4.79 86.38 0.41 6.44 16 11 C 0.19 5.87 0.32 3.60 0.00 5.87 16 12 N -0.69 -20.16 3.56 -426.08 -1.52 -21.68 16 13 C 0.59 21.08 7.22 86.68 0.63 21.70 16 14 O -0.57 -25.47 13.23 -4.04 -0.05 -25.53 16 15 C -0.26 -7.97 6.16 -20.08 -0.12 -8.09 16 16 C 0.09 1.73 11.64 67.72 0.79 2.52 16 17 O -0.14 -2.78 10.32 -0.69 -0.01 -2.79 16 18 C -0.10 -2.52 7.09 24.00 0.17 -2.35 16 19 C 0.61 15.35 8.06 86.48 0.70 16.04 16 20 N -0.81 -11.23 8.87 -176.33 -1.56 -12.80 16 21 O -0.57 -19.01 17.68 -4.30 -0.08 -19.09 16 22 C -0.09 -2.79 10.41 22.63 0.24 -2.56 16 23 C -0.11 -2.94 4.67 30.60 0.14 -2.80 16 24 C -0.11 -1.96 5.75 30.59 0.18 -1.78 16 25 C -0.11 -1.84 5.92 30.59 0.18 -1.65 16 26 C -0.11 -2.22 5.77 30.61 0.18 -2.04 16 27 C -0.12 -3.50 4.58 30.61 0.14 -3.36 16 28 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.38 19.29 6.46 -92.71 -0.60 18.69 16 30 H 0.02 0.83 6.25 -2.39 -0.01 0.82 16 31 H 0.02 0.73 8.14 -2.38 -0.02 0.72 16 32 H 0.41 8.88 6.16 -92.71 -0.57 8.31 16 33 H 0.27 2.57 7.47 -2.91 -0.02 2.55 16 34 H 0.42 3.49 8.57 -92.71 -0.79 2.69 16 35 H 0.42 4.16 8.93 -92.71 -0.83 3.34 16 36 H 0.15 5.30 8.06 -2.91 -0.02 5.28 16 37 H 0.06 1.81 7.11 -2.39 -0.02 1.79 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.06 6.78 -2.39 -0.02 1.04 16 41 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.06 1.23 7.60 -2.39 -0.02 1.21 16 45 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 46 H 0.05 1.88 6.28 -2.39 -0.01 1.86 16 Total: -1.00 -82.58 373.48 0.51 -82.06 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: -1.73 Total: 34.06 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 4.93 Total: 11.40 kcal Atomic # 7 Polarization: -125.12 SS G_CDS: -4.58 Total: -129.70 kcal Atomic # 8 Polarization: -47.27 SS G_CDS: -0.14 Total: -47.40 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -82.58 0.51 -82.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282616431.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.838 kcal (2) G-P(sol) polarization free energy of solvation -82.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds